mRNA_S-dermatodea_contig1273.1670.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig1273.1670.1 vs. uniprot
Match: A0A6H5J8H1_9PHAE (Structure-specific endonuclease subunit SLX4 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8H1_9PHAE) HSP 1 Score: 213 bits (543), Expect = 1.000e-52 Identity = 389/1251 (31.10%), Postives = 489/1251 (39.09%), Query Frame = 1
Query: 1 STGVARIPKTEFQEHIQMAKALSRSLVVAAPAAADTPEDSEE-----LARDPAAFHAKEKRLLGTLKELDLKLERLNKERDLALKKLAAHRALGARVSAGTAA----ARGDNFEGATKTAEEVGLAVPEKCVKYGTTYAGWLSSVAHGSPLSTPGARSGAQRGAVPLPPLPVVDSLFPEE-RDKPEAHVSTTSGDDGVTDRARRRKGRNRKASPLPGISASSDNATERNPAL-----ETDRGAGSPAPAVPGRDQEGES-------------------------------GDRGSSDGXXXXXESVHATEGPKLTRXXXXXXXXXXXXXXXXXXG-----GRTLWGIAQEAEELSQSKFVTGVFADVRAEAEAATARG-----HGRRRSRAATVTAAAYGEVSRYNRRCTRSAAADGS-LSMSLTNPAAIESYPGSPPEIRDAEKRMSGSASAAVGSGACKRRRGNDKLGVEEDSLFGNVD--TATDEAISLLSQTLSDQRVRAPLIQAASTAEAARPGMASRSE-----VERVAARHIALAPLAAVSRLFPEWEENVRFVFGQSAAELRDALESIDAALSGEEAAATAAAEAGEGRSRGRGERWDNDMGEEGLEDAAARRSGKAEALLFFEGVILEALELK------------------TSDESPTTPTESEGCGHGDVDGVLASRNGG------SDS---GGGASKQCGGDVGDAPQDPNSMPDAGDPGEDGETNKGVDG--GDRASLGRSDGPGANVSASGATTEAALDSAINAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVEGEDAAVAD-------QDSCETIVLSGDSCCDAIVTFDLTSSELSKYPGAPG------------------ATPPALEPPGSPVGSRHTD----ADTMDATEV----------------------------------------------------------------------ADGSATSSREAESVGGEEEGGGVT--YLDEEDFAVGVDDDFAW---NDLSAMPSSDCGTAEDPCAPPSPFPSPXXXXXXXXXXXXXXXXGDDEQLSPPGVAQRWRRCQPPIADLSQREGEETPLSDVSEDFFLHPPP-RASHVALPGPEPRALLG-GVSSEAGISLTQNAPSRG-CREAGSAAPPRSLSQPVRVRQAAAGTGGVGRGAASGDGRGGEAQHEVMPAFQKMTPQELAGMMAVYGLKKKSKREMAERLEHIWKALHPAAA 3153
ST VA+ PKTE+QEH+QMA+ALS+SLV A A A E SEE LAR+PAAF AKE+RL+G LK+LD+KLERL K+RD AL+KLAAHR LGAR+SAG + G GA KTAEEV + + HG+ + G SGA+ PL V S EE R + +S + + KG + SD A+ P +R G+PAP +P +++G S GD+G XXXX G + R G GRTLW IAQ A+ELSQS FVTGVFAD+RA + G H + R A VTAAAYG+ YNRR SAAA S LS +L + + D ++ M G G +R + +L +++ D A D+ I LLSQTLS V ER AARHIA AP++++S LFP W+ENV FVF Q AAEL++AL+ I ALS EE +AEAL+FFEGVILEALE + SP S +GV RNGG SDS GG S Q G + P++ S G E+GE VDG GD S+ + E +A N G G + DA S E IVLSGDS A+VTFDLTSSE SK + G A A P G+ G R++ A + E A+G ++ E+ G ++ V Y E+++ D AW NDLS +PS D D P XXXXXXXXXXXX D + G E L D+++ L P R +L + +G G S G+ A R C + S PV + A+ VG + R EVMP+F +MT QELAGMMAVYGLKKKSKREM ERLEHIWK LHPAAA
Sbjct: 298 STEVAKTPKTEYQEHMQMARALSKSLV-APKATAVQDEASEEVCTKELARNPAAFRAKERRLVGVLKDLDVKLERLKKDRDSALRKLAAHRTLGARLSAGAGGVPSESSGXXXXGAPKTAEEV---------------VDIIFADEHGAAAAAAGIGSGART------PLRVSTSRLSEEGRAQQRGATLLSSSPSSSSPVSLLSKG----TAVADAAGGGSDAASGERPTTVPRRSRRERAKGTPAP-LPAPEEDGASXXXXXXXXXXXXXFVAGARGTPPSGDNPRYDGDKGCWGDDXXXXXXXXXGVGRLIRRRSGGGANGNGQRSTPGGDGSRARRGRTLWAIAQGADELSQSDFVTGVFADIRANSTGGVGGGAGGKPHAAKPGRRAAVTAAAYGDARLYNRRVVSSAAASPSALSSTLCS------------DQGDTDEGMGGGR-----PGKSEREQSASQLNPSDENGGSGXDGDDAVDDVIQLLSQTLSQASVSGXXXXXXXXXXXXXXXXXXXXXXXXXXAERFAARHIARAPVSSLSGLFPNWKENVGFVFRQGAAELQEALQGIVTALSEEE-------------------------------------EKEAEALVFFEGVILEALEARGPACSRQLAFLGEERRRDDGSHSPGFEVGSPQTWRRGSEGVGIGRNGGGAVTPGSDSPPRGGANSVQDSGFALEGPEERGSERYDGGGSENGEGQARVDGESGDHLSV---------ADEATGLEETHATTAENNGHDAEPAAV------------------------GTDDGDAGTQSVGHPHHGDSSVEAIVLSGDSTASAVVTFDLTSSESSKRCSSAGDIXXXXXXXXXXXXXXXXAAGLAEFPVGADGGGRNSGRGVTARARNGQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRRKSHRGVTASVRNCQRKXXXXXXVXXXXXXXXXXXXXXGANGPDSTDERGEASGDSDD---VVDEYALEDEYGFDDHDYCAWGDENDLSFVPSPDIDGVADERQP-----------XXXXXXXXXXXXXXXXXXXXXXXXXXXAAADKVSHDSTSAMGAE--LLDLTQVAPLPSPSLRRCRESLDAAAATSPIGRGRSQHRGLESPATARRRHHCTPS---------SPPVEGEEGASSPTAVGGNEDIAELR------EVMPSFGQMTLQELAGMMAVYGLKKKSKREMTERLEHIWKTLHPAAA 1403
BLAST of mRNA_S-dermatodea_contig1273.1670.1 vs. uniprot
Match: D8LCH0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCH0_ECTSI) HSP 1 Score: 159 bits (402), Expect = 6.430e-36 Identity = 245/798 (30.70%), Postives = 309/798 (38.72%), Query Frame = 1
Query: 1 STGVARIPKTEFQEHIQMAKALSRSLVVAAPAAADTPEDSEELARDPAAFHAKEKRLLGTLKELDLKLERLNKERDLALKKLAAHRALGARVSAGTAAARGDNFEGATKTAEEVGLAVPEKCVKYGTTYAGWLSSVAHGSPLSTPGARSGAQRGAVPLPPLPVVDSLFPEERDKPEAHVSTTSGDDGVTDRARRRKGRNRKASPLPGISASSDNATERNPALETDRGAGSPAPAVPGRDQEGESGDRGSSDGXXXXXESVHATEGPKLTRXXXXXXXXXXXXXXXXXXGGRTLWGIAQEAEELSQSKFVTGVFADVRAEAEAATARGHG-----RRRSRAATVTAAAYGEVSRYNRRCTRSAAADGS-LSMSL-TNPAAIESYPGSPPEIRDAEKRMSGSASAAVGSGACKRRRGNDKLGVEEDSLFGNVD--TATDEAISLLSQTLSDQRVRAPLIQAASTAEAA-----RPGMASRSEVERVAARHIALAPLAAVSRLFPEWEENVRFVFGQSAAELRDALESIDAALSGEEAAATAAAEAGEGRSRGRGERWDNDMGEEGLEDAAARRSGKAEALLFFEGVILEALELKTSDESPTTPTESEGCGHGDVDGVLASRNGGSDSGGGASKQCGGD-VGDAPQDPNSMPDAGDPGEDGETNKG----------VDGGDRASLGRSDGPGANVSASGATTEAALDSAINAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVEGEDAAVAD-------QDSCETIVLSGDSCCDAIVTFDLTSSELSKYPGAPGAT 2298
ST VA+ PKTE+QEH+QMA+ALS+SLV A EELAR+PAAF AKE+RL+G LK+LD+KLERL K+RD AL+K GT R G G + G+ S +G ++ R GRTLW IAQ A+ELSQS FVTGVFAD++A + + G G + R A VTAAAYG+ YNRR SAAA S LS +L +N I++ S + D +K M G G +R + +L +++ G D A D+AI LLSQTLS V TA A G E ER AARHIA AP++A+S LFP W+ENV FVF Q AAELR AL+ I AALS G EG RRS KAEAL+FFEGV+LEALEL+ S + + E G D SR+ G ++G + G + VGD + DA PG D G ++ + ++ R DG GA+ G +A D G G + DA + S E IVLSGDS A+VTFDLTSSE SK + G T
Sbjct: 35 STEVAKTPKTEYQEHMQMARALSKSLVAPKATAVQDEASEEELARNPAAFRAKERRLVGVLKDLDVKLERLKKDRDSALRKR------------GTQRERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------XXXXXXXXXXXXXXXXXXXXXXXGRLXXXXXXGGANDNGQ--------------RSTPGGDGSRVRR-------------------GRTLWAIAQGADELSQSNFVTGVFADIKANSIGSVGGGAGGKPQAAKPGRRAAVTAAAYGDARLYNRRVGSSAAASASALSSTLCSNRGGIDAATRSA-DAADTDKGMGGGR-----PGKSEREQSVSQLNPSDENGGGGGDGNDAVDDAIQLLSQTLSQASVSGR----GGTASAQDGGQENSGKKQEEEAERSAARHIARAPVSALSGLFPNWKENVIFVFRQGAAELRLALQGIVAALS------EXXXXXXXXXXXXXXXXXXXXAGPEGRPSGVRRRSRKAEALVFFEGVVLEALELRGPACSRRSASLGEESGRED-----GSRSPGFEAGSRQTLHRGSEGVGDGI----TSGDAATPGSDSPPRGGASSVQDNVFALEEQEESARKRDDGAGASE---GGVGQAGGDG--EDGDHLSVADEAMGFEETHAATAENDGHDAEPAAVGADDGDAGMRSVGHPHHGDSSVEAIVLSGDSTASAVVTFDLTSSEASKRCSSAGDT 743 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1273.1670.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig1273.1670.1 >prot_S-dermatodea_contig1273.1670.1 ID=prot_S-dermatodea_contig1273.1670.1|Name=mRNA_S-dermatodea_contig1273.1670.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=1057bp STGVARIPKTEFQEHIQMAKALSRSLVVAAPAAADTPEDSEELARDPAAFback to top mRNA from alignment at S-dermatodea_contig1273:2043..7614+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig1273.1670.1 ID=mRNA_S-dermatodea_contig1273.1670.1|Name=mRNA_S-dermatodea_contig1273.1670.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5572bp|location=Sequence derived from alignment at S-dermatodea_contig1273:2043..7614+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig1273:2043..7614+ >mRNA_S-dermatodea_contig1273.1670.1 ID=mRNA_S-dermatodea_contig1273.1670.1|Name=mRNA_S-dermatodea_contig1273.1670.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=6342bp|location=Sequence derived from alignment at S-dermatodea_contig1273:2043..7614+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |