mRNA_S-dermatodea_contig12721.1668.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12721.1668.1
Unique NamemRNA_S-dermatodea_contig12721.1668.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12721.1668.1 vs. uniprot
Match: D7G263_ECTSI (Chaperone protein dnaJ-related n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G263_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 1.760e-21
Identity = 49/79 (62.03%), Postives = 58/79 (73.42%), Query Frame = 1 
Query:   10 AAAALERQFKGAAAPVHE-VSEGLGKGTPSPRQRLRLQQENLDLRWKMAKKRDASVCCRQCTGQGVCECRFCAGTGMFK 243
            A +ALERQF   AA   E +SEGLGKG PSPR+RLRLQQENLD+RW M++K + +VCCRQC G+GV E       GMFK
Sbjct:  164 AKSALERQFSQPAAARRERISEGLGKGVPSPRERLRLQQENLDMRWNMSRKANQTVCCRQCAGEGVVEXXXXXXXGMFK 242
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BLAST of mRNA_S-dermatodea_contig12721.1668.1 vs. uniprot
Match: A0A6H5L0Z5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Z5_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 3.590e-11
Identity = 24/36 (66.67%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:  136 LRWKMAKKRDASVCCRQCTGQGVCECRFCAGTGMFK 243
            +RW M++K + +VCCRQC G+G+ ECRFCAGTGMFK
Sbjct:    1 MRWNMSRKANQTVCCRQCAGEGIEECRFCAGTGMFK 36
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12721.1668.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G263_ECTSI1.760e-2162.03Chaperone protein dnaJ-related n=1 Tax=Ectocarpus ... [more]
A0A6H5L0Z5_9PHAE3.590e-1166.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12721contigS-dermatodea_contig12721:1355..2467 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHeat shock protein DnaJ, cysteine-rich domain
Ec32 orthologEc-08_004890.1
Exons2
Model size243
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924259.3957245-CDS-S-dermatodea_contig12721:1354..14571622924259.3957245-CDS-S-dermatodea_contig12721:1354..1457Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12721 1355..1457 -
1694079131.740036-CDS-S-dermatodea_contig12721:1354..14571694079131.740036-CDS-S-dermatodea_contig12721:1354..1457Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12721 1355..1457 -
1622924259.40841-CDS-S-dermatodea_contig12721:2327..24671622924259.40841-CDS-S-dermatodea_contig12721:2327..2467Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12721 2328..2467 -
1694079131.7592242-CDS-S-dermatodea_contig12721:2327..24671694079131.7592242-CDS-S-dermatodea_contig12721:2327..2467Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12721 2328..2467 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12721.1668.1prot_S-dermatodea_contig12721.1668.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12721 1355..2467 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12721.1668.1

>prot_S-dermatodea_contig12721.1668.1 ID=prot_S-dermatodea_contig12721.1668.1|Name=mRNA_S-dermatodea_contig12721.1668.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=81bp
SAAAAAALERQFKGAAAPVHEVSEGLGKGTPSPRQRLRLQQENLDLRWKM
AKKRDASVCCRQCTGQGVCECRFCAGTGMFK
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mRNA from alignment at S-dermatodea_contig12721:1355..2467-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12721.1668.1 ID=mRNA_S-dermatodea_contig12721.1668.1|Name=mRNA_S-dermatodea_contig12721.1668.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1113bp|location=Sequence derived from alignment at S-dermatodea_contig12721:1355..2467- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGCGCGGCGGCGGCGGCAGCCTTGGAGAGGCAGTTCAAGGGGGCGGCAGC
GCCCGTCCACGAGGTCAGCGAGGGTTTGGGAAAAGGCACGCCGTCTCCCA
GGCAGCGGCTTCGGTTACAGCAGGAGAACCTCGATCTCAGGTGGGCGTGG
GTGGGTAGATGGGTGGGTGGGTTTGCTTGGCGCGCGGCAGCAGCGGCGGG
GGAGCGAGAACGGCTTCTTCTGTGTTTTTTGTTTTTTGCCGATTAGACGA
GTTTTTCATATATTTTTTTCGTGTGCGTTTTGTGCATGCATGTATGTATT
TATTTTTATGCATGCATGCGAGGGAGCATTGTTTGAGTCCGAGTTCTTCT
TCTAGAGTTTTTTCCCCACATCTGGGATACTTTTTCTTATTTCTTGTACC
ATGAGTAAGTACCAGGGACGGTACGATGTAAAGTTGAAGTAGAGTTCTGA
TTACTTATTTTTCTCCTTGACTCTTTGCGTGTCTGACCACAAGTCGAGTC
GGACTAAGCCGATCGGCTATACGTGTGCAAATCAAATCAAATCAATCAAA
TGCATACTTGTACACACTTATTATTCCACTTCGCCTTCGTTCGGCAGGTT
TTATTCAGAAAGAGATAAACAAAGCGGATATGTGTATCAACACAGTAGTA
CAGCATTATGTGGTGCACTTGTCGAGAAGAAAAGTTTTTATATGTATAAT
AGTATAGCTTGTATGTATGTGTGTATGTGTGTATGTATCCGATTCCGAGT
CCTCTTCTAGCGTTTTTTTTTCTATATCTGGGGTGCTATTTTTCTTTCTA
TTACCATAGTAAGTACCAGGGACGGTTCGGTGTATCGCAGAAGTAGGGTG
TCTGATTAGTTATTTTTCTCCTTGACTCTTTGCGTATCTGACCACAAGTC
GGATAGGTCGGATTTAGCTGATCGGCTACGTGTGCAAGTCAAATCAAATC
AATAAAATAAAATAATATATGTACACACTACATCGGCGCTATGGCGGTGA
CTGACTCCAGGTGGAAGATGGCCAAGAAAAGGGACGCCTCGGTGTGCTGC
AGGCAGTGCACCGGGCAGGGCGTGTGCGAGTGCAGGTTCTGCGCCGGGAC
GGGGATGTTCAAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig12721:1355..2467-

>mRNA_S-dermatodea_contig12721.1668.1 ID=mRNA_S-dermatodea_contig12721.1668.1|Name=mRNA_S-dermatodea_contig12721.1668.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=486bp|location=Sequence derived from alignment at S-dermatodea_contig12721:1355..2467- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGCGCGGCGGCGGCGGCAGCCTTGGAGAGGCAGTTCAAGGGGGCGGCAGC
GCCCGTCCACGAGGTCAGCGAGGGTTTGGGAAAAGGCACGCCGTCTCCCA
GGCAGCGGCTTCGGTTACAGCAGGAGAACCTCGATCTCAGAGCGCGGCGG
CGGCGGCAGCCTTGGAGAGGCAGTTCAAGGGGGCGGCAGCGCCCGTCCAC
GAGGTCAGCGAGGGTTTGGGAAAAGGCACGCCGTCTCCCAGGCAGCGGCT
TCGGTTACAGCAGGAGAACCTCGATCTCAGGTGGAAGATGGCCAAGAAAA
GGGACGCCTCGGTGTGCTGCAGGCAGTGCACCGGGCAGGGCGTGTGCGAG
TGCAGGTTCTGCGCCGGGACGGGGATGTTCAAGGTGGAAGATGGCCAAGA
AAAGGGACGCCTCGGTGTGCTGCAGGCAGTGCACCGGGCAGGGCGTGTGC
GAGTGCAGGTTCTGCGCCGGGACGGGGATGTTCAAG
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