mRNA_S-dermatodea_contig12720.1667.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12720.1667.1
Unique NamemRNA_S-dermatodea_contig12720.1667.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig12720.1667.1 vs. uniprot
Match: A0A6H5L1Z6_9PHAE (Ccc protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Z6_9PHAE)

HSP 1 Score: 441 bits (1135), Expect = 2.520e-146
Identity = 218/227 (96.04%), Postives = 224/227 (98.68%), Query Frame = 1 
Query:   25 GIVFSSLGAAMQCLVGASRLVAAIANDHTIPLLRPFAPKPDEEPSKALYLVWVLGSLPCLAGNLDYITPVMTMFFLLMYACVNLSCFVLSILQSPGFRPRWKHYNWFTALAGFALCLAIMLVVSWRVAVSSIFLACALLFYIKYQNATRDWGDTLVGFRFQLARDMLLSLSYKDVHPKNWRPQLLVFCKIDAYGNPTVPGLLSLAGQMKMGRGLLMAVGLLEGDMVE 705
            GIVFSSLGAAMQCLVGASRLVAAIANDHTIPLLRPFAPKPDEEP+KA++LVWVL SLPCLAGNLDYITPVMTMFFLLMYACVNLSCFVLSILQSPGFRP+WKHYNW TAL+GF LCLAIMLVVSWRVAVSSIFLACALLFYIKYQNATRDWGDTLVGFRFQLARDMLLSLSYKDVHPKNWRPQLLVFCKIDAYGNPTVPGLLSLAGQMKMGRGLLM+VGLLEGDMVE
Sbjct:  396 GIVFSSLGAAMQCLVGASRLVAAIANDHTIPLLRPFAPKPDEEPNKAVFLVWVLASLPCLAGNLDYITPVMTMFFLLMYACVNLSCFVLSILQSPGFRPKWKHYNWLTALSGFILCLAIMLVVSWRVAVSSIFLACALLFYIKYQNATRDWGDTLVGFRFQLARDMLLSLSYKDVHPKNWRPQLLVFCKIDAYGNPTVPGLLSLAGQMKMGRGLLMSVGLLEGDMVE 622
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BLAST of mRNA_S-dermatodea_contig12720.1667.1 vs. uniprot
Match: D7FM44_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM44_ECTSI)

HSP 1 Score: 420 bits (1080), Expect = 3.150e-140
Identity = 218/272 (80.15%), Postives = 224/272 (82.35%), Query Frame = 1 
Query:   25 GIVFSSLGAAMQCLVGASRLVAAIANDHTIPLLRPFAPKPDEEPSKALYLVWVLGSLPCLAGNLDYITPVMTMFFLLMYACVNLSCFVLSILQSPGFRPRWKHYNWFTALAGFALCLAIMLVVSWR---------------------------------------------VAVSSIFLACALLFYIKYQNATRDWGDTLVGFRFQLARDMLLSLSYKDVHPKNWRPQLLVFCKIDAYGNPTVPGLLSLAGQMKMGRGLLMAVGLLEGDMVE 705
            GIVFSSLGAAMQCLVG+SRLVAAIANDHTIPLLRPFAPKPDEEP+KA+YLVWVL SLPCLAGNLDYITPVMTMFFLLMYACVNLSCFVLSILQSPGFRP+WKHYNW TAL+GF LCLAIMLVVSWR                                             VAVSSIFLACALLFYIKYQNATRDWGDTLVGFRFQLARDMLLSLSYKDVHPKNWRPQLLVFCKIDAYGNPTVPGLLSLAGQMKMGRGLLM+VGLLEGDMVE
Sbjct:  157 GIVFSSLGAAMQCLVGSSRLVAAIANDHTIPLLRPFAPKPDEEPNKAVYLVWVLASLPCLAGNLDYITPVMTMFFLLMYACVNLSCFVLSILQSPGFRPKWKHYNWLTALSGFILCLAIMLVVSWRRPGLHDGFRLAILGLGVVACDTGGWHLCRREEGGDRQKAKSLQMKVAVSSIFLACALLFYIKYQNATRDWGDTLVGFRFQLARDMLLSLSYKDVHPKNWRPQLLVFCKIDAYGNPTVPGLLSLAGQMKMGRGLLMSVGLLEGDMVE 428
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BLAST of mRNA_S-dermatodea_contig12720.1667.1 vs. uniprot
Match: A0A835Z2U9_9STRA (Amino acid permease-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2U9_9STRA)

HSP 1 Score: 283 bits (724), Expect = 9.400e-86
Identity = 148/236 (62.71%), Postives = 179/236 (75.85%), Query Frame = 1 
Query:   25 GIVFSSLGAAMQCLVGASRLVAAIANDHTIPLLRPFAPKPD-----------EEPSKALYLVWVLGSLPCLAGNLDYITPVMTMFFLLMYACVNLSCFVLSILQSPGFRPRWKHYNWFTALAGFALCLAIMLVVSWRVAVSSIFLACALLFYIKYQNATRDWGDTLVGFRFQLARDMLLSLSYKD-VHPKNWRPQLLVFCKIDAYGNPTVPGLLSLAGQMKMGRGLLMAVGLLEGD 696
            GIV +SLGAAMQC+ GAS L+AAIA+D  +P+L  FA                 P++A+    ++ +LPCLAGNLDYIT  +TM FLLMYA VNLSC+VL +LQSPGFRP+W++Y W+TAL G A+C+A+ML++SW  AV  I  A ALLFYIKYQNATRDWGDTL GFR+Q+ARD+LLSLS K  +H KNWRPQ+LV C ID  GNP VP LLSLAGQMK GRGLLMAV L++GD
Sbjct:  361 GIVAASLGAAMQCVTGASSLLAAIADDGALPVLSAFASPAAXXXXXXXXXXARAPARAVVATGLIAALPCLAGNLDYITAPITMAFLLMYASVNLSCYVLCVLQSPGFRPQWRYYAWWTALGGVAMCVALMLMISWEAAVVLITAAFALLFYIKYQNATRDWGDTLTGFRYQVARDVLLSLSEKQTMHAKNWRPQVLVLCAIDEGGNPLVPELLSLAGQMKKGRGLLMAVALIKGD 596
[Close]
BLAST of mRNA_S-dermatodea_contig12720.1667.1 vs. uniprot
Match: A0A835Z753_9STRA (Amino acid permease-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z753_9STRA)

HSP 1 Score: 271 bits (694), Expect = 1.130e-81
Identity = 138/237 (58.23%), Postives = 176/237 (74.26%), Query Frame = 1 
Query:   25 GIVFSSLGAAMQCLVGASRLVAAIANDHTIP------------LLRPFAPKPDEEPSKALYLVWVLGSLPCLAGNLDYITPVMTMFFLLMYACVNLSCFVLSILQSPGFRPRWKHYNWFTALAGFALCLAIMLVVSWRVAVSSIFLACALLFYIKYQNATRDWGDTLVGFRFQLARDMLLSLS-YKDVHPKNWRPQLLVFCKIDAYGNPTVPGLLSLAGQMKMGRGLLMAVGLLEGD 696
            GIV +SLGAA+QC++GAS L+ AIAND TIP             L   A  P    ++A+ L   + ++PCLAGNLDYI   ++M +LLMY  VNLSC+VL +L+SPGFRP+W++Y+W TALAG  +C+ +ML++SW+ AV S  +A ALLFYIKYQNATRDWGD+L GFR+Q+ARDMLLSL  ++ +H KNWRPQ+LV C ID  GNPTVP LL+LA QMK GRGLLMA  L++GD
Sbjct:  257 GIVAASLGAAIQCIIGASNLLTAIANDGTIPASGSGARTMSTAFLARVADGPGGSAARAIALTGFIATVPCLAGNLDYIAAPISMAYLLMYGSVNLSCYVLCVLKSPGFRPQWRYYSWGTALAGVVMCMLLMLIISWQAAVLSSIMAFALLFYIKYQNATRDWGDSLTGFRYQVARDMLLSLKGHQTMHAKNWRPQILVLCNIDDGGNPTVPELLALAAQMKKGRGLLMAAALIKGD 493
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BLAST of mRNA_S-dermatodea_contig12720.1667.1 vs. uniprot
Match: A0A7S2K263_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K263_9STRA)

HSP 1 Score: 236 bits (601), Expect = 2.660e-68
Identity = 123/237 (51.90%), Postives = 160/237 (67.51%), Query Frame = 1 
Query:    1 PFSLIFLPGIVFSSLGAAMQCLVGASRLVAAIANDHTIPLLRPFAP-KPDEEPSKALYLVWVLGSLPCLAGNLDYITPVMTMFFLLMYACVNLSCFVLSILQSPGFRPRWKHYNWFTALAGFALCLAIMLVVSWRVAVSSIFLACALLFYIKYQNATRDWGDTLVGFRFQLARDMLLSLSYKD-VHPKNWRPQLLVFCKIDAYGNPTVPGLLSLAGQMKMGRGLLMAVGLLEGDMVE 705
            P  LI   GI+ SS+GAA+QC+ GA RL+AAIA D TIP LRPF P  P  EP +A++L W + SLP LAGNLD+ITP++TMFFLLMYA  N+SCF LSI+++P FRP +K+++W T+L GF  C+ + LV+SW  A+ +I L   L  YIK Q A RDWGD   GF + +A   L +L   D  H KNWRPQ+L    ID  G P    LLSLA Q+K G GL M + ++EG +++
Sbjct:  423 PHELIVKIGIIMSSIGAALQCVAGAPRLLAAIAMDETIPFLRPFMPASPTAEPKRAVWLTWFIASLPTLAGNLDFITPIITMFFLLMYAGCNISCFFLSIVKTPNFRPTFKYFHWSTSLFGFIWCIGLALVISWYTAIVAISLCVILYGYIKSQGAVRDWGDVTQGFLYNVASHALTALEDSDDFHAKNWRPQILTILDIDEDGYPCEKHLLSLAAQLKKGNGLNMLLSIVEGSILD 659
[Close]
BLAST of mRNA_S-dermatodea_contig12720.1667.1 vs. uniprot
Match: A0A7R9YE43_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YE43_9STRA)

HSP 1 Score: 232 bits (592), Expect = 3.890e-67
Identity = 115/229 (50.22%), Postives = 163/229 (71.18%), Query Frame = 1 
Query:   25 GIVFSSLGAAMQCLVGASRLVAAIANDHTIPLLRPFAPKPDEE----PSKALYLVWVLGSLPCLAGNLDYITPVMTMFFLLMYACVNLSCFVLSILQSPGFRPRWKHYNWFTALAGFALCLAIMLVVSWRVAVSSIFLACALLFYIKYQNATRDWGDTLVGFRFQLARDMLLSL-SYKDVHPKNWRPQLLVFCKIDAYGNPTVPGLLSLAGQMKMGRGLLMAVGLLEGD 696
            GIV S++GA +Q L GA RL+ AIAND  +P L+ FA +PDE       +A+ L +V+ SLPCLAGNLD+ITP +TM FL+MYA VN SCFVLSIL++PG+RP +++Y+W TALAG   C+ +ML++SW VA+  + +   LL YI+ Q+A R+WGD   GFR  + RD +L+L S  ++H KNWRPQ+++   ++ YG+P+ P ++  AGQ+K GRGL++    L GD
Sbjct:  373 GIVLSTVGAGLQSLTGAPRLLVAIANDGFVPFLQYFAQRPDEPLETTVKRAVILTYVIASLPCLAGNLDFITPFITMLFLIMYAAVNFSCFVLSILKAPGWRPTFRYYHWGTALAGTIWCVVLMLIISWWVAIIVMAVGAMLLLYIRTQDAKRNWGDAARGFRLSIVRDQMLALDSRSEMHAKNWRPQIMLVADVNEYGHPSRPEIIRFAGQLKKGRGLILVNAFLAGD 601
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BLAST of mRNA_S-dermatodea_contig12720.1667.1 vs. uniprot
Match: A0A8J2SMD4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SMD4_9STRA)

HSP 1 Score: 212 bits (540), Expect = 1.210e-59
Identity = 121/308 (39.29%), Postives = 163/308 (52.92%), Query Frame = 1 
Query:    1 PFSLIFLPGIVFSSLGAAMQCLVGASRLVAAIANDHTIPLLRPFAPK----------------------------------------PDEEPSK----------------------------------ALYLVWVLGSLPCLAGNLDYITPVMTMFFLLMYACVNLSCFVLSILQSPGFRPRWKHYNWFTALAGFALCLAIMLVVSWRVAVSSIFLACALLFYIKYQNATRDWGDTLVGFRFQLARDMLLSLSYKDV--HPKNWRPQLLVFCKIDAYGNPTVPGLLSLAGQMKMGRGLLMAVGLLEGD 696
            P  ++   GI+ SSLGAA+Q L GA RL++AIA D+ +P L PFAP                                         PDE PS                                   AL L W + S+PCLAGNLD ITP++TMFFLLMYA +N+SCF ++ L +PGFRP W+ ++W +AL G  LCL +M  +SW  ++ ++     + FY++ +  + DWGD   GFRFQ+ARD LL+L+ +    H KNWRPQ+LV C+ D   NP  P LL+LAG +K GRGLLMA  L++  
Sbjct:  431 PHPVVVKVGIIMSSLGAALQSLTGAPRLLSAIAGDNLVPFLEPFAPHKEEXXXXXXXXVADSPRRVQSRNRLSTPADLETAGGAPSAPDETPSPVSSPSRKSFFELSNASVQVGRSSAPKNSAELRPTALLLTWFVASVPCLAGNLDAITPIITMFFLLMYATINVSCFAVAFLGTPGFRPTWRCFHWSSALLGCLLCLGLMFAISWLYSLVALAFGAGVGFYVRSRRVSTDWGDAGAGFRFQVARDQLLALTERSTFHHAKNWRPQILVLCRCDGRFNPVKPELLALAGLLKKGRGLLMAHALIDAQ 738
[Close]
BLAST of mRNA_S-dermatodea_contig12720.1667.1 vs. uniprot
Match: A0A7S4MWD7_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MWD7_9STRA)

HSP 1 Score: 207 bits (526), Expect = 9.050e-58
Identity = 105/223 (47.09%), Postives = 149/223 (66.82%), Query Frame = 1 
Query:   25 GIVFSSLGAAMQCLVGASRLVAAIANDHTIPLLRPFAPKPDEE----PSKALYLVWVLGSLPCLAGNLDYITPVMTMFFLLMYACVNLSCFVLSILQSPGFRPRWKHYNWFTALAGFALCLAIMLVVSWRVAVSSIFLACALLFYIKYQNATRDWGDTLVGFRFQLARDMLLSLS---YKDVHPKNWRPQLLVFCKIDAYGNPTVPGLLSLAGQMKMGRGLLM 672
            G+V S +GAA+QCL GA RL+ AIA D T+P+L+   PK  E+    P KA+++ W + S+P LAGNLD+ITP++TMF+LLMY+ +NLS F L +++SPGFRP +++++W  +L GF  CL + LV+SW  A+ ++ L   L  Y + Q + +DWGD   G R+ +   +L  L+    + VH KNWRPQLL     D  GNPT   +LSLAGQ+K GRG+ M
Sbjct:  369 GVVLSCVGAALQCLAGAPRLLQAIAMDGTMPMLKSLQPKHGEDITSTPKKAVWITWFIASVPTLAGNLDHITPIVTMFYLLMYSGINLSTFFLGVIKSPGFRPTFRYFHWSVSLLGFVWCLTLALVISWYTALCALSLFSLLYVYNRRQKSNKDWGDVGDGLRYNVVTSLLRDLTGTTAEHVHAKNWRPQLLTVVDTDDLGNPTDLWVLSLAGQLKKGRGINM 591
[Close]
BLAST of mRNA_S-dermatodea_contig12720.1667.1 vs. uniprot
Match: A0A6G0WHY2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WHY2_9STRA)

HSP 1 Score: 204 bits (518), Expect = 5.610e-57
Identity = 99/225 (44.00%), Postives = 148/225 (65.78%), Query Frame = 1 
Query:   25 GIVFSSLGAAMQCLVGASRLVAAIANDHTIPLLRPFAPKPDEEPSKALYLVWVLGSLPCLAGNLDYITPVMTMFFLLMYACVNLSCFVLSILQSPGFRPRWKHYNWFTALAGFALCLAIMLVVSWRVAVSSIFLACALLFYIKYQNATRDWGDTLVGFRFQLARDML--LSLSYKDVHPKNWRPQLLVFCKIDAYGNPTVPGLLSLAGQMKMGRGLLMAVGLLEG 693
            GI F+++G A+Q L    R++AA+AND+ IP LRPFA +  +EP +A+ L  +L  +PC+AGNLDY++P +TM  L++   +N++CF  +   +PGFRP W++++W TAL G   C  +M+  SW   + +IF+  AL  Y+KY    +DWGD++ G + +L   +L  L+ + ++ H KNWRPQ+LVFCK D  G P  P +L  A Q+K G GL+  VGLLEG
Sbjct:  348 GIFFAAIGGALQNLTSQPRMLAAMANDNVIPFLRPFAIEEGQEPHRAIVLSMLLTCIPCVAGNLDYLSPFLTMVNLMLCLTLNVACFAAACAHTPGFRPHWQYFHWSTALLGALWCFGLMMFFSWFKGLIAIFICLALRVYVKYLGFEKDWGDSIRGMQLELVCSLLKMLNRTSEEEHTKNWRPQVLVFCKTDVKGIPVSPEMLHFASQLKEGHGLVEVVGLLEG 572
[Close]
BLAST of mRNA_S-dermatodea_contig12720.1667.1 vs. uniprot
Match: A0A024TUN0_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TUN0_9STRA)

HSP 1 Score: 204 bits (518), Expect = 6.140e-57
Identity = 101/222 (45.50%), Postives = 145/222 (65.32%), Query Frame = 1 
Query:   25 GIVFSSLGAAMQCLVGASRLVAAIANDHTIPLLRPFAPKPDEEPSKALYLVWVLGSLPCLAGNLDYITPVMTMFFLLMYACVNLSCFVLSILQSPGFRPRWKHYNWFTALAGFALCLAIMLVVSWRVAVSSIFLACALLFYIKYQNATRDWGDTLVGFRFQLARDML--LSLSYKDVHPKNWRPQLLVFCKIDAYGNPTVPGLLSLAGQMKMGRGLLMAVGL 684
            GI+FS++G A+Q L    R++AA+AND+ IP LRPFA K  +EP  A+ L   L  +PC AGNLDY++P +TM  L+    +NL+CF  S   +PGFRP+W++++W TAL G   C  +M+  SW  AV +I +  AL  Y+KY    +DWG+++ G + +LA  +L  L  + ++ H KNWRPQ+LVFCK+D+ G P  P +L  A Q+K G GL+  VGL
Sbjct:  341 GILFSAIGGALQSLANQPRMLAAMANDNIIPFLRPFAVKEGQEPRLAIVLCMCLTCIPCFAGNLDYLSPFLTMVSLMQCLTLNLACFAASAAHTPGFRPQWRYFHWTTALVGAMWCFGLMMFFSWLRAVGAIAICIALRIYVKYLGVEQDWGNSVRGMQLELACTLLKMLHTTTEEEHTKNWRPQVLVFCKMDSTGLPLSPQILHFASQLKEGHGLVEVVGL 562
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12720.1667.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L1Z6_9PHAE2.520e-14696.04Ccc protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7FM44_ECTSI3.150e-14080.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z2U9_9STRA9.400e-8662.71Amino acid permease-domain-containing protein n=1 ... [more]
A0A835Z753_9STRA1.130e-8158.23Amino acid permease-domain-containing protein n=1 ... [more]
A0A7S2K263_9STRA2.660e-6851.90Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]
A0A7R9YE43_9STRA3.890e-6750.22Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A8J2SMD4_9STRA1.210e-5939.29Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S4MWD7_9STRA9.050e-5847.09Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A6G0WHY2_9STRA5.610e-5744.00Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A024TUN0_9STRA6.140e-5745.50Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12720contigS-dermatodea_contig12720:1093..6894 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score426.0
Seed ortholog evalue1.1e-116
Seed eggNOG ortholog2880.D7FM44
KEGG koko:K14427
KEGG TC2.A.30.5
EggNOG free text desc.potassium:chloride symporter activity
EggNOG OGsCOG0531@1,KOG2082@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categorysignal peptide
Exons5
Model size705
Cds size705
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12720.1667.1prot_S-dermatodea_contig12720.1667.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12720 1093..6894 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924259.316184-CDS-S-dermatodea_contig12720:1092..12241622924259.316184-CDS-S-dermatodea_contig12720:1092..1224Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12720 1093..1224 -
1694079131.6847024-CDS-S-dermatodea_contig12720:1092..12241694079131.6847024-CDS-S-dermatodea_contig12720:1092..1224Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12720 1093..1224 -
1622924259.3274395-CDS-S-dermatodea_contig12720:3111..31841622924259.3274395-CDS-S-dermatodea_contig12720:3111..3184Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12720 3112..3184 -
1694079131.6977992-CDS-S-dermatodea_contig12720:3111..31841694079131.6977992-CDS-S-dermatodea_contig12720:3111..3184Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12720 3112..3184 -
1622924259.3400512-CDS-S-dermatodea_contig12720:4440..45381622924259.3400512-CDS-S-dermatodea_contig12720:4440..4538Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12720 4441..4538 -
1694079131.7057073-CDS-S-dermatodea_contig12720:4440..45381694079131.7057073-CDS-S-dermatodea_contig12720:4440..4538Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12720 4441..4538 -
1622924259.3528798-CDS-S-dermatodea_contig12720:6245..63901622924259.3528798-CDS-S-dermatodea_contig12720:6245..6390Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12720 6246..6390 -
1694079131.7163208-CDS-S-dermatodea_contig12720:6245..63901694079131.7163208-CDS-S-dermatodea_contig12720:6245..6390Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12720 6246..6390 -
1622924259.3634393-CDS-S-dermatodea_contig12720:6637..68941622924259.3634393-CDS-S-dermatodea_contig12720:6637..6894Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12720 6638..6894 -
1694079131.7260542-CDS-S-dermatodea_contig12720:6637..68941694079131.7260542-CDS-S-dermatodea_contig12720:6637..6894Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12720 6638..6894 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12720.1667.1

>prot_S-dermatodea_contig12720.1667.1 ID=prot_S-dermatodea_contig12720.1667.1|Name=mRNA_S-dermatodea_contig12720.1667.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=235bp
PFSLIFLPGIVFSSLGAAMQCLVGASRLVAAIANDHTIPLLRPFAPKPDE
EPSKALYLVWVLGSLPCLAGNLDYITPVMTMFFLLMYACVNLSCFVLSIL
QSPGFRPRWKHYNWFTALAGFALCLAIMLVVSWRVAVSSIFLACALLFYI
KYQNATRDWGDTLVGFRFQLARDMLLSLSYKDVHPKNWRPQLLVFCKIDA
YGNPTVPGLLSLAGQMKMGRGLLMAVGLLEGDMVE
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mRNA from alignment at S-dermatodea_contig12720:1093..6894-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12720.1667.1 ID=mRNA_S-dermatodea_contig12720.1667.1|Name=mRNA_S-dermatodea_contig12720.1667.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5802bp|location=Sequence derived from alignment at S-dermatodea_contig12720:1093..6894- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCCTTCTCGCTTATCTTCCTTCCAGGAATCGTCTTCTCTTCCCTTGGCGC
GGCGATGCAGTGCCTGGTCGGTGCGTCGCGGCTGGTCGCTGCGATCGCTA
ACGACCACACCATCCCGTTGCTGCGGCCGTTCGCGCCGAAGCCCGACGAG
GAGCCGTCGAAGGCCCTGTACTTGGTGTGGGTGCTGGGGTCTCTCCCGTG
TCTCGCGGGAAACCTGGACTATATCACTCCGGTCATGACCATGTTCTTCC
TGCTCATGTGAGTTTTTTGTTTTCAATGTGATTTTTTTCTTTAACTCCAG
TTGAAACTGGGACTCTACAACCCCCCACGCCCCTCCTTCCCCCTTTTGAG
GTTCGAGGTGGGGTTGGTTGGTGGAGGCAGGGTTTGGCTCTTGTGGCGTG
TACATATTAATAGCTGTATAACTGCCATGTTGTAGGGCATGGGGGACGGA
CATTCATGTGAGCTAATAATAATATCATTATTAATAATAACATTATTACC
GCAGGTACGCGTGCGTGAACCTGAGCTGCTTCGTCCTGAGCATCCTGCAG
AGCCCCGGCTTCCGCCCGCGCTGGAAGCACTACAACTGGTTCACTGCGCT
CGCCGGGTTCGCCCTGTGCCTGGCCATCATGCTCGTCGTTAGCTGGAGGG
TGAGTCAGCTCGCTCGCTCGCTTGTGAATTTTTGTGTTACCGGAAGCAAC
ATAACACAGAACGTGTACTGTAGTTGTACAAGTACTGTACAATTCAAAGC
TCATGGGGACAGACAGGACCCGGGAGTTATACTTGTAGCATGCGCGCGCT
GTGGCGGCTTGGTGTGGACTCCGGTAAGAGACTTATCTATTAATACCTCG
CCCCCCACGCCTTGCCTTTAGCAGGGAAAGGGTGGTTGGGATTGTGTGTG
TGTATGTGTGTGTTTGTGTATGTGTATGTATATGTGTGTGTGTGGGTGTG
TGTTGGTGTGGGTGTTTTTTTTTTTCTTTTTTTTCTTGTGGATTTTTGGA
TGTGTTTCGCAACGATAAAAAAATAGCCGCTTGTTTTGTTAAGTGTATTT
TTACAGATGCTGTAGGTGTGTGTGTATGTGTATGTATGTGTGTATGTGTT
GTGTTGTGTGTGTGTGTGTGTTTTTTTTTTTTCTTGTAGATTTTTTTATG
TGTTTTGCAACGATAAAAAAAATAAAAAAACGCTTGTTTTGTTAATTGTT
TTTACAGATGCTGCTGTGCAAGGTATTTTATTTACTCTTTGGCTGTGAGA
ATATGTGACGTAGCCCTCACTGTGTGTATCGTATTTTGTCATGTTAATAG
TGTTTTTTCTTGTTTTTTTTTCTGCTGTTGTTGTTTCACACGACCACGTC
GTCTCATGTCGCGCGTGTCTAACGTGCACCAGTATATCACGGTGCTGGGC
ATCAGTAGGTAGGTACTGGATGCCGTCCAGCAACGAGCAGGACCCGCCCG
CCGGCGTGTGCTTGACGTGCAGACTTTCGCAACACAGTACGGTATATCCA
CAAATAAAAATCGAGATTCTTCCGAATCTGCGGTATCAGTGGCATACAAA
CTGAACTGACAACCAACTTCGACTATATACTTGTATATATTTTTAAAGCC
CTTGAACAAGAAAACGTTTTTTTTTTTTTGCGCATGTTGCATGTTGGTTG
TTTTTTTTATAGTCGGTTGGCTTTTTGTGCGCGGTGAGTGCCAACTGGAA
TGAGACCTGGCGAGTGCGCTCTGTGTCTACGAACGGGATGTGCGACCATT
TTTTTATTTTGGCGTTTGGTAGGCTGATCGGTCATATGTGTCGAAAAAAT
TGATCGATATATACACACAGGTATCGATCAATCGTTCAATCAATCAAGCG
ATCGATCATGCAAATATTCAATCAATCAATCAATCAATCAGTATCAGTTA
AATCAATTCGCTTCTATTCAATTCAATCAATCAATCGATCCACTCAAGGA
ATCAATCAATACATTAATCAACTAATCAATAAAATCAAATAAAACCAAAC
ACTCAACCAATCAATCAATTAATAAAATCAAATCAAATCAAATAAATCAC
TCAACCAATCAACCAATCATCAATCACTCAATCAATTAATCAATCAAATC
ACTCAAGTAATCAATCAATCATTTAATCAATAAAATAAAATATAACAAAA
TATAATCAATCACTCAACCAATCAACCAATCATAATCATCTATCACTCAA
TCAATCAAATCACTCAATCACATCAAATCCATATCAATTAACCAATCTAA
CGAATACAATCAATCAATTAAGCAACCGCCGCCGCCTCCCATCTCGTTGA
ACACCCGCTGCTCATTTGTCTTTTGCGGCCGCGTCCGCGCCTCCTCCCTG
TCCCAGGTGGCCGTCAGCTCGATATTCCTGGCGTGCGCGCTGCTGTTCTA
CATCAAGTATCAAAACGCCACGCGAGACTGGGGAGACACCCTTGTAGGCT
TCAGGTAAAAAAGCCTTTGATATTTTATATTGATATTTTAGATTAATACT
TAATAATGCTTATTAAATTATATAGCATATCGCACTTGTATTATATCGTA
TATTGTTTGCTTGTATTGCAGCAGTACAGAGTAGATCGTATAAATATTTA
TTCTGTATGATCTTGTGTATTATACGCACATGTTATATCGTGCATTTATA
CTTGTAGTATGGTATCGTATATTATGCTTGTATTTTATCTTTATAAGTGC
TCTGTAAGCCACTAGTATCTCTCTATGTACTGTAGTAGCTACTCTAAAAT
CCTTATCATCAAAAGCGTATAGGAATAATTCGCTCTAGATTCCCCATGTT
TTGCACCAATTTTTTGCATCAAGAGTATACAACAGGAACACAGTTATCTT
AAGTCGCAATTAAAGATGTGTGGGCAAAGCGCACAACTGACTACTCTGTA
GATGTACCACTCTATAATTCCTGTGACTTTGGGCATCAATGATTGTATAG
GAAATTCGGCATCAACGGTCAACTCTAAATCGCCATTAAAAAACGTGCAA
AGAAGTATCAATTAAGAAATACTACTTGGTATATTATTATTAATAGGTTG
CACTTGTTATTGTAGTGTACTATCAATATTATAGTAGGTAGCCACAGTAA
GGCTACTACGCCCGTGAGGTGAAAAATCCTACCAGTACTATTTTCAACGC
TTGGCGCTCAACCCAAACATCAAGTGTTTTTGCATCACTTTTTACTATAG
GATTCCGGCCTCTCACAATATCATAGCGTTATCTGAAAAATCGCTGTTTT
ACAGAGGTAGGAGAGTAATCGGGTAGCAAATTTGCCATAGAGTATGCCCA
ACCTATTAACAGTAGATCAGACATCCGTGTGGTTCTTGCATTCGCACGGC
GATCAAAGTCCCGTTGCGGTACTTGGAGTGTAGTCACGCCTACTGAATGT
GTAACATTTGGTTACCCGGCATAATATGTCCAATCAACCCATGGCATAGC
GTTTGGCGTCGCAAACGCAAGGGTGATGACCAGCAGCTGGTACAAGTGTC
ATCCTTGTGAAACGCAGCCTGGCCGGCGAACCGAAAACCCGGCATATCGC
TCCGTCCCGGCATTGGTGGGACTTGTGGTCCATGTCCGTATGGATACGAC
ATGCGTTTAACATAAGTACAACCCCACCCCTCCCCCACCCCCCCACCCCC
ACCTCCCCCCCTCCCCGCGCCTATCCCCTATTCGTGCTACAAACCCCCCC
GCCCGGGCAGGTTCCAGCTCGCCCGCGACATGCTGCTCTCGCTTTCCTAC
AAAGACGTTCACCCCAAGAACTGGCGACCTCAGGTGAATGGGTCCCCTTA
AATATAAACTAGTAGGTATTAATGTATTAATAGCCACTACAGGTAGTAGG
CGACGCCCGTGGGGTGTGCTTTGGCAGGACGACGGTCGGCTTCAAAGGCT
AAAAAAAATGGTTGTCCGGCGTCGATAATATGTTTCACCACCTTAACGCT
AAATCGCAGTTATTTTCTGCAGAATAATTGGCTCTAAATCGCTAATACAT
TAAAGAACGTGGATTGTTCCTTTAATTTGTAGGGATGTATGTGTGTGTTA
GGGAGGTACAGTACTGTATACAGTAATCAGGACCTTGAGCGTGTCAACCA
GTTTTGTATCCAGTACGTATGGTATGCCAGAATCAATATGGTATGGTCTG
GTCTGGCCTTGCCTTGCCTTGCCTTGCCTAGGCTTTTTTTTTATCATACA
AGTACATCATGTGCGCAATCGAAAAAAATATCTGGCCTGAAATGAGAAAA
ATGTCGAAAAATCGTTTTTTGTTTTTTTCCTTACAAAAGGTGTTCGGGCC
GAAGTGTAAAAAAAAGAAGACACAATACCTGAATGCATACTAGTACGAGA
TAAAAATACAGCTATCATATTTAGAGTAGAAATTTTTCTCCTGATTGGTG
TGTACCTTTGTAGCAAGTGCTTTTACTAGGTTGGTTATTTATCGTATGAT
GTATCCCCGCTGATATTCCAAGCGCGGCGTTTCATTATATTCATTTTGTA
TTGTAGTTACTATACGTACCGGTTAGGTGGCGACGGCTACGCCCCGTGAG
AGGTGAAAATTCCTACTCTTTTCAAACACTTGGCGCCCAACACACACACC
AAGTTGTTTGGCATCACTTTTTCATGTAGGATTCGGGCCCCACAATCGTC
CTCTAACAGCAGTGTTAATACTAAAAATCGGTCTTTAAGCGCTACTAATT
AACAAAGATTGTAGAGAACCCCCTTTGTTTTCACCGAAAGTCGTGACTAC
AAGTACGGGTATCGCAGCACCAGTTACAGGGTGCCGGCGTTCCGCCGTCT
CTTGAGCGAAGGACAGCCACCGTTCGGGTACTGTACCTGTTACCTGTTCG
GATACTGTACCTGTTCGGGTACTGTACCTATTCGGGTACTGTACATGTTA
CCTGTTCGAGTGCTGTACCTGTTCGGGTGCTGTACCTATTCGGGTACTGT
ACATGTTACCTGTTCGAGTGCTGTACCTGTTCGGGTACTGTACCTGTTCG
AGTGATGTACCTGTTCGGGTGCTGCACCTATTCGGGTACTGTACATGTTG
CCTGTTCGGGTACTGTACCTGTTCGAGTGATGTACCTGTTCGGGTGCTGT
ACCTATTCGGGTACTGTACATGTTACCTGTTCGAGTGCTGTACCTGTTCG
GGTACTGTGCCTGTTCGGGGTTTTTCTTTCTCACGCTCTCGCGCTTTCCG
TGGCGGAGGTAAGACGCAATAAAACAATAAATGTCGACCCTGCCCGGATT
TTTTAAAATATTTCTCACGCTCTCGCGCTTTCCGTGGCGGAGGTAAGAAG
CAATGTGACACGGGGTCCTACTCCGCCTTGCTGGACGTTGTTGCTCATGC
GGGCGAAAAACTAGGCCAGATCACACTTATGTCTAATACTGTAGAGTGTA
AAGTACCTACCCTGTGCCTCTCTCTTAGTCTGCTTATTACGTGAACGGGC
AAAACTGTTATCACGCCGTTTTGATTTCATCCTCACCTCCACACCTCTTT
TCCCCGCGCCCTGGATTTAACCCCACAGCCCTCGCCGGTGCGGTAGTAGT
GCTCCCACGTGTTTCTCGCGTCCCCATACTATAGTAGCAAGCACGGCGGC
GCAATTCCTTGCTTACCATGACCTCCATGCGTCCCCTTTTTCTTGTTTTT
TTTTTGCCGCTTTATCTCAGCTGCTGGTGTTCTGCAAGATCGACGCGTAC
GGCAACCCGACGGTGCCTGGCCTCCTGTCCCTGGCTGGTCAGATGAAGAT
GGGGAGGGGCTTGCTCATGGCGGTCGGTCTCCTGGAGGGTGACATGGTCG
AG
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Coding sequence (CDS) from alignment at S-dermatodea_contig12720:1093..6894-

>mRNA_S-dermatodea_contig12720.1667.1 ID=mRNA_S-dermatodea_contig12720.1667.1|Name=mRNA_S-dermatodea_contig12720.1667.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1410bp|location=Sequence derived from alignment at S-dermatodea_contig12720:1093..6894- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCCTTCTCGCTTATCTTCCTTCCAGGAATCGTCTTCTCTTCCCTTGGCGC
GGCGATGCAGTGCCTGGTCGGTGCGTCGCGGCTGGTCGCTGCGATCGCTA
ACGACCACACCATCCCGTTGCTGCGGCCGTTCGCGCCGAAGCCCGACGAG
GAGCCGTCGAAGGCCCTGTACTTGGTGTGGGTGCTGGGGTCTCTCCCGTG
TCTCGCGGGAAACCTGGACTATATCACTCCGGTCATGACCATGTTCTTCC
TGCTCATCCCTTCTCGCTTATCTTCCTTCCAGGAATCGTCTTCTCTTCCC
TTGGCGCGGCGATGCAGTGCCTGGTCGGTGCGTCGCGGCTGGTCGCTGCG
ATCGCTAACGACCACACCATCCCGTTGCTGCGGCCGTTCGCGCCGAAGCC
CGACGAGGAGCCGTCGAAGGCCCTGTACTTGGTGTGGGTGCTGGGGTCTC
TCCCGTGTCTCGCGGGAAACCTGGACTATATCACTCCGGTCATGACCATG
TTCTTCCTGCTCATGTACGCGTGCGTGAACCTGAGCTGCTTCGTCCTGAG
CATCCTGCAGAGCCCCGGCTTCCGCCCGCGCTGGAAGCACTACAACTGGT
TCACTGCGCTCGCCGGGTTCGCCCTGTGCCTGGCCATCATGCTCGTCGTT
AGCTGGAGGGTACGCGTGCGTGAACCTGAGCTGCTTCGTCCTGAGCATCC
TGCAGAGCCCCGGCTTCCGCCCGCGCTGGAAGCACTACAACTGGTTCACT
GCGCTCGCCGGGTTCGCCCTGTGCCTGGCCATCATGCTCGTCGTTAGCTG
GAGGGTGGCCGTCAGCTCGATATTCCTGGCGTGCGCGCTGCTGTTCTACA
TCAAGTATCAAAACGCCACGCGAGACTGGGGAGACACCCTTGTAGGCTTC
AGGTGGCCGTCAGCTCGATATTCCTGGCGTGCGCGCTGCTGTTCTACATC
AAGTATCAAAACGCCACGCGAGACTGGGGAGACACCCTTGTAGGCTTCAG
GTTCCAGCTCGCCCGCGACATGCTGCTCTCGCTTTCCTACAAAGACGTTC
ACCCCAAGAACTGGCGACCTCAGGTTCCAGCTCGCCCGCGACATGCTGCT
CTCGCTTTCCTACAAAGACGTTCACCCCAAGAACTGGCGACCTCAGCTGC
TGGTGTTCTGCAAGATCGACGCGTACGGCAACCCGACGGTGCCTGGCCTC
CTGTCCCTGGCTGGTCAGATGAAGATGGGGAGGGGCTTGCTCATGGCGGT
CGGTCTCCTGGAGGGTGACATGGTCGAGCTGCTGGTGTTCTGCAAGATCG
ACGCGTACGGCAACCCGACGGTGCCTGGCCTCCTGTCCCTGGCTGGTCAG
ATGAAGATGGGGAGGGGCTTGCTCATGGCGGTCGGTCTCCTGGAGGGTGA
CATGGTCGAG
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