mRNA_S-dermatodea_contig1272.1666.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig1272.1666.1 vs. uniprot
Match: D7G873_ECTSI (Chromodomain-helicase-DNA-binding protein 8 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G873_ECTSI) HSP 1 Score: 563 bits (1450), Expect = 2.780e-174 Identity = 388/698 (55.59%), Postives = 445/698 (63.75%), Query Frame = 3
Query: 3 CLECGEKGPEMDSHNRAIKVPGGVSRCQLSSCGRFYHKECLNKMSPNRTAYSKEGNFKCPQHFCNDCGKTSTNLGPRTLSKCLRCAKARCPECLTKARYVKKGKWMVCSDHEWKPQDVALFEEQQLQKKYGAEKGKRKPKSPPQPSVQFTKEQEVALLDARAPVCYFCKGDVDDASTAQGAFIRPPFVQKTIKHGELPIWLHANCMLYTPECFVEYPVA-----------AAPAASGKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAESPAKTRSAGAADADGAAIGGDGDCKPVYYGVDEARKRVALKCTSCRLQGALIGCHSSSCQTSTHYACAMREGWEFGEPDADGKLFLCIMHRKQGQVRFERKPPAKKASKKXXXXXXXXXXXXXXAKGKSKARDRSFSIQEXXXXXXXXTSPVRGVSSGEDAKPGDARAATPDEIKTPRSKKSRRAASXXXXXXXAVKXXXXXXXXXXGSRNRPGDGPRVGGGGMGVGPPPRVGKDGELVVQCACGKVEREGQGYIQCQECQSWQHFQCAGTSA-DAANATDYFTCRDCLASSSRRRPSGGSGPKRXXXLGSGAQSAAGEDGGSGTPGAKRSKSTXXXXAKARSPGSSAGVXXXXXXXXXXXXXXXXXXXXXXXXWA----SLEDGWEELDSLQKKAVVMNTLAYLAKEDPLGYFAEPVDASL 2048
CLECG+KG EMDSHNRA+K+PGGVSRCQLSSCGR+YHKECL+K++PNRT+YSKEGNFKCPQHFC DCGKTSTNLGPRTL KCLRCAKARCP+CL ARYVKKGKWMVCSDHEW PQD+A+FEEQQ KK GA+KGKRKPK+PPQP++QFT E+E A LD RAPVCYFCK D DD ++ +GAFIRPPFVQ+TIKHG+ PIWLH NCMLYTPEC VEYP +APA P XXXXXXXXX XXXXXXXXXXX G KPVYYGVDEARKR+ LKCTSC QGALI CH SC +THY CA REGW+FG D+DGK+FLC+MHR +GQVRFERK PAK+ +K +KGK XXXXXXXX+ P A GD ++K+P++KK+RR+ SXXXXXXX XX X R PP R+G+DG+ VVQC CG E E QGY+QC CQ W H +CAGT+A D +A F+C DC+ ++ + P+ G P + A+ G GG XXXX XXXXXXXXXXXXXXXXXXXXXX A SL +GW+ LD QK VM L LAKEDPL YFAEPV L
Sbjct: 2788 CLECGKKGSEMDSHNRAVKIPGGVSRCQLSSCGRYYHKECLDKITPNRTSYSKEGNFKCPQHFCIDCGKTSTNLGPRTLVKCLRCAKARCPDCLKTARYVKKGKWMVCSDHEWTPQDLAMFEEQQRIKKSGADKGKRKPKAPPQPTIQFTPEEEEAQLDVRAPVCYFCKRDRDDPNSIEGAFIRPPFVQRTIKHGDFPIWLHKNCMLYTPECSVEYPGGGGKGSSEGGKKSAPAKDELPSTTXXXXXXXXXDATSSAKIKAETXXXXXXXXXXXXXXXXXXXXXXKKPPSG---------KPVYYGVDEARKRIGLKCTSCGKQGALIPCHVQSCSVTTHYGCARREGWKFGGHDSDGKIFLCVMHRNEGQVRFERKAPAKRGPRKSVSKTP--------SKGKGGTPXXXXXXXXXXXXXXXXSEP---------ALDGDG------DLKSPKAKKARRSPSXXXXXXXXXXXXESGDSKRXXXXXXXXXXARR--------PPVRLGEDGKPVVQCPCGVAELEPQGYVQCDNCQVWLHLECAGTTAEDVEDAGGSFSCLDCVEDANSKSPNNGGKPPQ-------AKQRKGSLGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRGAPRRTSLGEGWDRLDDQQKSRCVMKALELLAKEDPLNYFAEPVSNPL 3438
BLAST of mRNA_S-dermatodea_contig1272.1666.1 vs. uniprot
Match: A0A662YAQ6_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YAQ6_9STRA) HSP 1 Score: 66.2 bits (160), Expect = 1.730e-7 Identity = 45/127 (35.43%), Postives = 65/127 (51.18%), Query Frame = 3
Query: 3 CLECGEKGPEMDSHNRAIKVPGGVSRCQLSSCGRFYHKECLN--KMS----PNRTAYSKEG-------NFKCPQHFCNDCG--KTSTNLGPRTLSKCLRCAKARCPECLT-KARYVKKGKWMVCSDH 335
C CG G I GGV RC ++SCG+F+H+ C+N KMS +TA + EG +F+CP+H C+ C K S++L CL+C +A P+C+ ARY G ++C H
Sbjct: 362 CFACGRNG--------TINEKGGVFRCNVTSCGKFFHQSCINANKMSRRAGKTKTAVAGEGELLDFDASFRCPRHICSVCKGEKKSSDL-----MCCLKCPEAYHPQCVPPSARYNTIG--LLCWRH 473
BLAST of mRNA_S-dermatodea_contig1272.1666.1 vs. uniprot
Match: UPI0018973AEC (histone-lysine N-methyltransferase NSD3 n=1 Tax=Nematolebias whitei TaxID=451745 RepID=UPI0018973AEC) HSP 1 Score: 64.7 bits (156), Expect = 6.060e-7 Identity = 34/92 (36.96%), Postives = 46/92 (50.00%), Query Frame = 3
Query: 72 VSRCQLSSCGRFYHKECLNKMSPNRTAYSKEGNFKCPQHFCNDC--GKTSTNLGPRTLSKCLRCAKARCP--ECLTKARYVKKGKWMVCSDH 335
V+RC +S CG +YHKEC+ K+ T S G F CPQH C+ C + L +C+RC A P CL + M+CS+H
Sbjct: 915 VTRCSVSGCGCYYHKECVRKLPG--TTISSSGGFCCPQHSCSTCCLERDVQRASKGRLIRCIRCPLAYHPGDSCLAAGSVILTHHIMICSNH 1004
BLAST of mRNA_S-dermatodea_contig1272.1666.1 vs. uniprot
Match: A0A6A4FFA2_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A4FFA2_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 2.800e-6 Identity = 43/127 (33.86%), Postives = 60/127 (47.24%), Query Frame = 3
Query: 3 CLECGEKGPEMDSHNRAIKVPGGVSRCQLSSCGRFYHKECL--NKMSPNRTAYSKEGN------------FKCPQHFCNDC-GKTSTNLGPRTLSKCLRCAKARCPECLT-KARYVKKGKWMVCSDH 335
C CG G I GGV RC ++SCG+F+H+ C+ NKMS K G+ F+CP+H C C GK ++ L CL+C +A P+C+ ARY G ++C H
Sbjct: 448 CFGCGRNG--------TISEKGGVFRCSVASCGKFFHQTCVDANKMSRRSGGKVKPGSATAEELLETDASFRCPRHICFVCEGKKKSS----DLMCCLKCPEAYHPQCVPPSARYNTVG--LLCWRH 560
BLAST of mRNA_S-dermatodea_contig1272.1666.1 vs. uniprot
Match: A0A7S0CYL2_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CYL2_9EUKA) HSP 1 Score: 62.0 bits (149), Expect = 3.880e-6 Identity = 35/96 (36.46%), Postives = 50/96 (52.08%), Query Frame = 3
Query: 60 VPGGVSRCQLSSCGRFYHKECLNKMSPNR------TAYSKEGNFKCPQHFCNDCGKTSTNLGPRTLSKCLRCAKARCPECLTKARYVK-KGKWMVC 326
+P V RC +S+CGR+YH EC+ S R YS F+CP H+C C K+ + + L C+RC A CL K +Y + K+M+C
Sbjct: 992 LPDPVRRCSVSTCGRYYHLECIAAHSSARWIGDVSLGYSS---FRCPLHYCAVCEKSGNS---KHLLNCVRCPNALHVSCLEKNQYTRLTKKFMLC 1081
BLAST of mRNA_S-dermatodea_contig1272.1666.1 vs. uniprot
Match: UPI0013AF6571 (histone-lysine N-methyltransferase NSD3 isoform X1 n=3 Tax=Etheostoma spectabile TaxID=54343 RepID=UPI0013AF6571) HSP 1 Score: 61.6 bits (148), Expect = 5.370e-6 Identity = 38/115 (33.04%), Postives = 53/115 (46.09%), Query Frame = 3
Query: 3 CLECGEKGPEMDSHNRAIKVPGGVSRCQLSSCGRFYHKECLNKMSPNRTAYSKEGNFKCPQHFCNDC--GKTSTNLGPRTLSKCLRCAKA--RCPECLTKARYVKKGKWMVCSDH 335
CLEC S A + V+RC +S CG +YHK+C+ K+ P T+ S +G F CPQH C+ C + L +C+RC A C+ M+CS H
Sbjct: 893 CLECRNGNHSCFSCKTAGRQ---VTRCSVSGCGCYYHKDCVRKL-PGTTS-SSDGGFCCPQHSCSTCCLERDLQRASKGRLMRCIRCPVAYHTGDSCVAAGSVALTHHIMICSSH 1002
BLAST of mRNA_S-dermatodea_contig1272.1666.1 vs. uniprot
Match: A0A6A5FHC8_PERFL (Uncharacterized protein n=7 Tax=Percidae TaxID=8165 RepID=A0A6A5FHC8_PERFL) HSP 1 Score: 61.6 bits (148), Expect = 5.370e-6 Identity = 38/117 (32.48%), Postives = 53/117 (45.30%), Query Frame = 3
Query: 3 CLECGEKGPEMDSHNRAIKVPGG--VSRCQLSSCGRFYHKECLNKMSPNRTAYSKEGNFKCPQHFCNDC--GKTSTNLGPRTLSKCLRCAKA--RCPECLTKARYVKKGKWMVCSDH 335
CLEC +H G V+RC +S CG +YHK+C+ K+ P T+ S +G F CPQH C+ C + L +C+RC A C+ M+CS H
Sbjct: 892 CLEC-----RNGNHXXXXXXXXGREVTRCSVSGCGCYYHKDCVRKL-PGTTS-SSDGGFCCPQHSCSTCCLERDLQRASKGRLMRCIRCPVAYHTGDSCVAAGSVALTHHIMICSSH 1001
BLAST of mRNA_S-dermatodea_contig1272.1666.1 vs. uniprot
Match: A0A484E7L2_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E7L2_BRELC) HSP 1 Score: 61.2 bits (147), Expect = 6.020e-6 Identity = 40/126 (31.75%), Postives = 59/126 (46.83%), Query Frame = 3
Query: 3 CLECGEKGPEMDSHNRAIKVPGGVSRCQLSSCGRFYHKECL--NKMSPNRTAYSK------------EGNFKCPQHFCNDCGKTSTNLGPRTLSKCLRCAKARCPECLT-KARYVKKGKWMVCSDH 335
C CG G +I GGV RC ++SCG+F+H+ C+ N++S SK E F+CP+H C C + + L CL+C +A P+C+ ARY G ++C H
Sbjct: 340 CFACGRNG--------SINEKGGVFRCGVASCGKFFHQTCIDANRLSRRAGGKSKPSLSTLEGLLESEAFFRCPRHICFVCEQKRKSSD---LMYCLKCPEAYHPQCVPPSARYNSVG--LLCWKH 452
BLAST of mRNA_S-dermatodea_contig1272.1666.1 vs. uniprot
Match: A0A0P1ATF0_PLAHL (Set domain protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ATF0_PLAHL) HSP 1 Score: 61.2 bits (147), Expect = 6.120e-6 Identity = 39/125 (31.20%), Postives = 57/125 (45.60%), Query Frame = 3
Query: 3 CLECGEKGPEMDSHNRAIKVPGGVSRCQLSSCGRFYHKECLNKMSPNRTAYSK-------------EGNFKCPQHFCNDCGKTSTNLGPRTLSKCLRCAKARCPECLT-KARYVKKGKWMVCSDH 335
C CG G I GGV RC ++SCG+FYH+ C++ +R A K + F+CP+H C C + + L CL+C +A P+C+ ARY G ++C H
Sbjct: 385 CFACGRNG--------TINEKGGVFRCSVASCGKFYHQVCIDANKMSRRAGGKFKPSSMVLEVFEWDAFFRCPRHVCIVCEERRKSSD---LMCCLKCPEAYHPQCVPPSARYNTVG--LLCWRH 496
BLAST of mRNA_S-dermatodea_contig1272.1666.1 vs. uniprot
Match: A0A8C9YYD4_SANLU (Nuclear receptor binding SET domain protein 3 n=1 Tax=Sander lucioperca TaxID=283035 RepID=A0A8C9YYD4_SANLU) HSP 1 Score: 61.2 bits (147), Expect = 6.620e-6 Identity = 37/117 (31.62%), Postives = 51/117 (43.59%), Query Frame = 3
Query: 3 CLECGEKGPEMDSHNRAIKVPGG--VSRCQLSSCGRFYHKECLNKMSPNRTAYSKEGNFKCPQHFCNDC--GKTSTNLGPRTLSKCLRCAKA--RCPECLTKARYVKKGKWMVCSDH 335
CLEC +H G V+RC +S CG +YHK+C+ K+ T S +G F CPQH C+ C + L +C+RC A C+ M+CS H
Sbjct: 524 CLEC-----RNGNHXXXXXXXXGREVTRCSVSGCGCYYHKDCVRKLPG--TTNSSDGGFCCPQHSCSTCCLERDLQRASKGRLMRCIRCPVAYHTGDSCVAAGSVALTHHIMICSSH 633 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1272.1666.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig1272.1666.1 >prot_S-dermatodea_contig1272.1666.1 ID=prot_S-dermatodea_contig1272.1666.1|Name=mRNA_S-dermatodea_contig1272.1666.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=681bp MDSHNRAIKVPGGVSRCQLSSCGRFYHKECLNKMSPNRTAYSKEGNFKCPback to top mRNA from alignment at S-dermatodea_contig1272:14396..20615+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig1272.1666.1 ID=mRNA_S-dermatodea_contig1272.1666.1|Name=mRNA_S-dermatodea_contig1272.1666.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=6220bp|location=Sequence derived from alignment at S-dermatodea_contig1272:14396..20615+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig1272:14396..20615+ >mRNA_S-dermatodea_contig1272.1666.1 ID=mRNA_S-dermatodea_contig1272.1666.1|Name=mRNA_S-dermatodea_contig1272.1666.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=4086bp|location=Sequence derived from alignment at S-dermatodea_contig1272:14396..20615+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |