mRNA_S-dermatodea_contig12718.1664.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12718.1664.1
Unique NamemRNA_S-dermatodea_contig12718.1664.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12718.1664.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12718contigS-dermatodea_contig12718:4677..6715 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size626
Cds size510
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12718.1664.1prot_S-dermatodea_contig12718.1664.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12718 4677..6601 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924258.8421164-CDS-S-dermatodea_contig12718:4676..51831622924258.8421164-CDS-S-dermatodea_contig12718:4676..5183Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12718 4677..5183 -
1694079131.3127816-CDS-S-dermatodea_contig12718:4676..51831694079131.3127816-CDS-S-dermatodea_contig12718:4676..5183Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12718 4677..5183 -
1622924258.8600643-CDS-S-dermatodea_contig12718:6598..66011622924258.8600643-CDS-S-dermatodea_contig12718:6598..6601Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12718 6599..6601 -
1694079131.3228164-CDS-S-dermatodea_contig12718:6598..66011694079131.3228164-CDS-S-dermatodea_contig12718:6598..6601Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12718 6599..6601 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924258.869064-UTR-S-dermatodea_contig12718:6601..67151622924258.869064-UTR-S-dermatodea_contig12718:6601..6715Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12718 6602..6715 -
1694079131.33275-UTR-S-dermatodea_contig12718:6601..67151694079131.33275-UTR-S-dermatodea_contig12718:6601..6715Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12718 6602..6715 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12718.1664.1

>prot_S-dermatodea_contig12718.1664.1 ID=prot_S-dermatodea_contig12718.1664.1|Name=mRNA_S-dermatodea_contig12718.1664.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=170bp
MALTLNPASVRVSFSPESLEIRTHRAVSLDATWPTSTPAGTQQQQQQQQQ
QRPVGSSKGEPPFKGAPAASLPKTASAIGGGSHRSAESWDKRRSAAAAAA
AAQLERHRQAVAMLVTRQRDAGDPAYAPAAAAAAAARPADLDADDNTAPR
KAQKKLHETSTTPAAAAAGT
back to top

mRNA from alignment at S-dermatodea_contig12718:4677..6715-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12718.1664.1 ID=mRNA_S-dermatodea_contig12718.1664.1|Name=mRNA_S-dermatodea_contig12718.1664.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2039bp|location=Sequence derived from alignment at S-dermatodea_contig12718:4677..6715- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGGCGAGGCCCACCACCACGACTACCTCGCACACACGTCACACCACGCG
AACGCAGAGCACCTCCGGCGCCGTGGTATAGAGACTTTCCAGCAACAGCC
CCACACAACGCAAAATGGTGAGAGAAGAGTATATATTATAGCTATTATAT
AATAAATATATACGCTCCGCAGCACGAGGGGTTCATATAAGTCTTGCTGT
CTCCATGAGTGCTGCGCAGGCCGGGCGCGCTGCGTGACCATATTATACAT
TATACTACATATCATTAAATACTGGTACAGTACTTGTTTATGACGTACGT
ACATGTATAGCTCTATGATAGATACTTGTAGTATGCACCACGTCAGTCGG
AGATATAGAGTTCGATGAATTCAGTCCTACTACTGCTGTATATTAGGAAT
CCATCCGTCATCGATGGCGGTTTGTTACCGCCAAGTATATTAGGCATCAT
CACTGAAAAGAGAGCTTCTACCGCGCCCGAAGAGAGCTGCTGGGTGTTGT
AGTTAGACCTCTTCAATTTTGCATGTGGCTGTACTGAGCCTCCGCCCAGC
AACAATTAATCAACACCCCGCGCATACCATATAATATACCAGGTACATAC
CTTTCCCGTGTTCTTGAAACATCTTTATATCTTTAAATACTACTCTGTTG
TAGTTGTTGATAATTGTATAGAAAATAGAGTTCGACAAGCAGGAATCCGT
AATATTCAACATTCAATTATGGCAACACTCAATATTCGGCCTGTTGCAGT
TGGTGAAAACTAAAAATGGTGGAAATTGCTCCCTGTAAACTGATTAGTAA
TTTTTCTCCTTGACTCTTTGCGTGTCTGACCACAAGTCGGGTCGGACTAT
GCCGATCGGCTATACGTGTGCAAATCGATCGATCAATCAATCAATCAATC
AAACACTAATAATCTGTAATAATATCATATCATCTCCAGACATAACTCTA
GCTGCAAGTAATAGAGGTTCTCTTCTCTAGTACGAGTATGCATGTAGGGT
GGAAAGCATGTATGATACAACCAAGGTTTACAGATGCCCCCGCAGCTAAG
CAGTCCGCACGAGCTCCAGCGAACTACAGTATTAGGCGAAGGTCGATCAT
CGGTCGATGGCATCCATGTCGCCTGCGAGAGAGTAAAGAAGAAGCAATAT
GCAGTCGAGGATCTTTCGGCCCATCTCTCATCTCTCTTGTGCGCCGGGCC
CACCCTTGAGAATCTCACATGACTTTTTTTTTCTGTAATCTATGACAGTG
ACAATCTGATTTGAGTGGACCCTGGACAACTTATTTTCTACGGAGTATAT
TTTTCGTTTTTTTAATTTAAAGGAACAAGGTCCGCCGGCTGTGGCGATAA
AGATGTATGTACCCTTCTGTCGCAGCTGCTACTACTCTTCTGCTCTTCCT
CTGCTGGTGCTGCGCTGCGCAAAGGCGCAAACTCCACAGCACCCGCGAGA
ATAACACAGGCGTCCGTCGTCCGACACTCTGCATGTGCCGTCCCTCCCCC
GCCCACTCCCATGTGCCCCCGTCCTCCCACAGGCCTTGACCCTGAACCCA
GCGAGTGTGCGCGTGAGCTTCTCGCCTGAAAGCCTCGAAATTCGAACCCA
CCGTGCGGTCTCCCTCGATGCGACCTGGCCAACTTCCACACCAGCAGGGA
CACAGCAACAGCAGCAGCAGCAGCAGCAGCAGCGCCCAGTAGGCTCCTCG
AAAGGAGAGCCCCCCTTCAAGGGTGCGCCAGCCGCCTCCCTTCCCAAGAC
TGCTTCCGCTATCGGTGGTGGCAGCCACCGCAGCGCCGAGAGCTGGGACA
AGCGCAGGAGTGCTGCCGCTGCCGCTGCTGCCGCTCAGCTAGAGCGGCAC
AGGCAGGCTGTCGCGATGCTTGTAACTCGACAACGTGATGCTGGAGACCC
TGCCTACGCCCCCGCAGCAGCAGCAGCAGCAGCAGCACGTCCGGCCGACC
TCGATGCTGATGATAATACTGCCCCGAGAAAGGCCCAGAAAAAGCTGCAC
GAGACGAGCACAACGCCCGCAGCGGCCGCCGCAGGCACC
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig12718:4677..6715-

>mRNA_S-dermatodea_contig12718.1664.1 ID=mRNA_S-dermatodea_contig12718.1664.1|Name=mRNA_S-dermatodea_contig12718.1664.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1020bp|location=Sequence derived from alignment at S-dermatodea_contig12718:4677..6715- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATGGCCTTGACCCTGAACCCAGCGAGTGTGCGCGTGAGCTTCTCGCC
TGAAAGCCTCGAAATTCGAACCCACCGTGCGGTCTCCCTCGATGCGACCT
GGCCAACTTCCACACCAGCAGGGACACAGCAACAGCAGCAGCAGCAGCAG
CAGCAGCGCCCAGTAGGCTCCTCGAAAGGAGAGCCCCCCTTCAAGGGTGC
GCCAGCCGCCTCCCTTCCCAAGACTGCTTCCGCTATCGGTGGTGGCAGCC
ACCGCAGCGCCGAGAGCTGGGACAAGCGCAGGAGTGCTGCCGCTGCCGCT
GCTGCCGCTCAGCTAGAGCGGCACAGGCAGGCTGTCGCGATGCTTGTAAC
TCGACAACGTGATGCTGGAGACCCTGCCTACGCCCCCGCAGCAGCAGCAG
CAGCAGCAGCACGTCCGGCCGACCTCGATGCTGATGATAATACTGCCCCG
AGAAAGGCCCAGAAAAAGCTGCACGAGACGAGCACAACGCCCGCAGCGGC
CGCCGCAGGCACCGCCTTGACCCTGAACCCAGCGAGTGTGCGCGTGAGCT
TCTCGCCTGAAAGCCTCGAAATTCGAACCCACCGTGCGGTCTCCCTCGAT
GCGACCTGGCCAACTTCCACACCAGCAGGGACACAGCAACAGCAGCAGCA
GCAGCAGCAGCAGCGCCCAGTAGGCTCCTCGAAAGGAGAGCCCCCCTTCA
AGGGTGCGCCAGCCGCCTCCCTTCCCAAGACTGCTTCCGCTATCGGTGGT
GGCAGCCACCGCAGCGCCGAGAGCTGGGACAAGCGCAGGAGTGCTGCCGC
TGCCGCTGCTGCCGCTCAGCTAGAGCGGCACAGGCAGGCTGTCGCGATGC
TTGTAACTCGACAACGTGATGCTGGAGACCCTGCCTACGCCCCCGCAGCA
GCAGCAGCAGCAGCAGCACGTCCGGCCGACCTCGATGCTGATGATAATAC
TGCCCCGAGAAAGGCCCAGAAAAAGCTGCACGAGACGAGCACAACGCCCG
CAGCGGCCGCCGCAGGCACC
back to top