mRNA_S-dermatodea_contig12712.1660.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12712.1660.1
Unique NamemRNA_S-dermatodea_contig12712.1660.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig12712.1660.1 vs. uniprot
Match: D8LJD5_ECTSI (Calcium-dependent protein kinase, isoform 2 (CDPK 2) Protein kinase domain containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJD5_ECTSI)

HSP 1 Score: 314 bits (805), Expect = 9.310e-104
Identity = 159/188 (84.57%), Postives = 167/188 (88.83%), Query Frame = 1
Query:    1 ASGEAFAIKTIKKSK--------------VPRLVLLKREIDILRTVDHPTLIRLEDVYEDEVNLHLVTELCTGGELFDRILAKTESEEGHYSERDAAIIVHKILGAIEYIHNEHNICHRDLKPENFLFKTEDDQADLKIIDFGLSRFEDGSEAMTTRVGTPYYIAPEVLQKKYDKACDLWSIGVIMYI 522
            A+GE FAIKTIKKSK              VPRLVLLKREI+ILR VDHPTLIRLEDVYED+VNLHLVTELCTGGELFDRI+ KTES+EGHYSERDAA IV KI+GAIEY HNEHNICHRDLKPENFLFKT+DDQADLKIIDFGLSRFEDGSEAMTTRVGTPYYIAPEVL KKYDKACDLWSIGVIM+I
Sbjct:   37 ATGEEFAIKTIKKSKCQVACRIDWYPFRQVPRLVLLKREIEILRAVDHPTLIRLEDVYEDDVNLHLVTELCTGGELFDRIILKTESQEGHYSERDAANIVIKIIGAIEYCHNEHNICHRDLKPENFLFKTKDDQADLKIIDFGLSRFEDGSEAMTTRVGTPYYIAPEVLSKKYDKACDLWSIGVIMFI 224          
BLAST of mRNA_S-dermatodea_contig12712.1660.1 vs. uniprot
Match: A0A835ZG53_9STRA (Calcium-dependent protein kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG53_9STRA)

HSP 1 Score: 284 bits (727), Expect = 9.700e-92
Identity = 140/169 (82.84%), Postives = 152/169 (89.94%), Query Frame = 1
Query:   16 FAIKTIKKSKVPRLVLLKREIDILRTVDHPTLIRLEDVYEDEVNLHLVTELCTGGELFDRILAKTESEEGHYSERDAAIIVHKILGAIEYIHNEHNICHRDLKPENFLFKTEDDQADLKIIDFGLSRFEDGSEAMTTRVGTPYYIAPEVLQKKYDKACDLWSIGVIMYI 522
            +AIKTIKK KV RL LLKREI+ILRTVDHP++I+L DVYED  +LHLVTELCTGGELFDRI+AKTES+EGHY ERDAA IVHKIL AIEYIHNEHNICHRDLKPENFLFK+  D +DLKIIDFGLSRFED +  MTTRVGTPYYIAPEVL+KKYD ACDLWSIGVI YI
Sbjct:   70 YAIKTIKKGKVGRLELLKREIEILRTVDHPSIIKLVDVYEDANHLHLVTELCTGGELFDRIIAKTESDEGHYCERDAAGIVHKILSAIEYIHNEHNICHRDLKPENFLFKSAADDSDLKIIDFGLSRFEDQATHMTTRVGTPYYIAPEVLEKKYDSACDLWSIGVITYI 238          
BLAST of mRNA_S-dermatodea_contig12712.1660.1 vs. uniprot
Match: W7T8G8_9STRA (Calcium-dependent protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7T8G8_9STRA)

HSP 1 Score: 274 bits (701), Expect = 5.970e-87
Identity = 132/173 (76.30%), Postives = 152/173 (87.86%), Query Frame = 1
Query:    4 SGEAFAIKTIKKSKVPRLVLLKREIDILRTVDHPTLIRLEDVYEDEVNLHLVTELCTGGELFDRILAKTESEEGHYSERDAAIIVHKILGAIEYIHNEHNICHRDLKPENFLFKTEDDQADLKIIDFGLSRFEDGSEAMTTRVGTPYYIAPEVLQKKYDKACDLWSIGVIMYI 522
            +GEAFAIK+I+K+KV RL  L+REIDIL+ VDHP +I+L DVYED+  LHLVTELCTGGE+FDRI+AKT+S EGHYSE+DAA+I+ KIL AI+Y H  HNICHRDLKPENFLFKTED  A+LKIIDFGLSRFED  + MTTRVGTPYYIAPEVL + YDK+CDLWSIGVIMYI
Sbjct:  136 TGEAFAIKSIRKAKVSRLDSLRREIDILQAVDHPQIIKLVDVYEDDKFLHLVTELCTGGEMFDRIIAKTKSAEGHYSEKDAAVIMRKILDAIDYCHTVHNICHRDLKPENFLFKTEDPSAELKIIDFGLSRFEDDQKYMTTRVGTPYYIAPEVLNRMYDKSCDLWSIGVIMYI 308          
BLAST of mRNA_S-dermatodea_contig12712.1660.1 vs. uniprot
Match: A0A6H5L236_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L236_9PHAE)

HSP 1 Score: 261 bits (667), Expect = 3.110e-82
Identity = 127/173 (73.41%), Postives = 146/173 (84.39%), Query Frame = 1
Query:    4 SGEAFAIKTIKKSKVPRLVLLKREIDILRTVDHPTLIRLEDVYEDEVNLHLVTELCTGGELFDRILAKTESEEGHYSERDAAIIVHKILGAIEYIHNEHNICHRDLKPENFLFKTEDDQADLKIIDFGLSRFEDGSEAMTTRVGTPYYIAPEVLQKKYDKACDLWSIGVIMYI 522
            +G+ FAIKTI+K++V R+  L RE+ ILR V HP +I L DVYEDE+NLHLVTELCTGGELFDRIL KTESEEG YSERDA  +V KIL AI Y H+EHNICHRDLKPENFLFK + D ++LKIIDFGLSRFE+ ++ MTTRVGTPYYIAPEVL + Y+KACDLWSIGVI YI
Sbjct:   58 TGQQFAIKTIRKARVSRVESLLREVQILRKVSHPNIIELVDVYEDEMNLHLVTELCTGGELFDRILEKTESEEGRYSERDAMTLVTKILSAIAYCHDEHNICHRDLKPENFLFKDKADDSELKIIDFGLSRFEETNQIMTTRVGTPYYIAPEVLGRSYNKACDLWSIGVIAYI 230          
BLAST of mRNA_S-dermatodea_contig12712.1660.1 vs. uniprot
Match: A0A836CG63_9STRA (Calcium-dependent protein kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG63_9STRA)

HSP 1 Score: 257 bits (657), Expect = 4.000e-81
Identity = 126/173 (72.83%), Postives = 141/173 (81.50%), Query Frame = 1
Query:    4 SGEAFAIKTIKKSKVPRLVLLKREIDILRTVDHPTLIRLEDVYEDEVNLHLVTELCTGGELFDRILAKTESEEGHYSERDAAIIVHKILGAIEYIHNEHNICHRDLKPENFLFKTEDDQADLKIIDFGLSRFEDGSEAMTTRVGTPYYIAPEVLQKKYDKACDLWSIGVIMYI 522
            +GEA+A+KTIKKS+V R+  LKREI+ILR V HP +I L  VYED+  +HLVTELCTGGELFDRI+ KTES EG YSERDAA IV  IL  I Y H +HNICHRDLKPENFLFK  DD   +KIIDFGLSRFE+ + AMTTRVGTPYYIAPEVL + YDKACDLWSIGVI YI
Sbjct:   61 TGEAYAVKTIKKSRVSRIESLKREIEILRRVRHPNIIALVAVYEDDRYIHLVTELCTGGELFDRIIKKTESAEGRYSERDAARIVRNILSGIAYCHTQHNICHRDLKPENFLFKRADDDTQIKIIDFGLSRFEEANSAMTTRVGTPYYIAPEVLLRSYDKACDLWSIGVITYI 233          
BLAST of mRNA_S-dermatodea_contig12712.1660.1 vs. uniprot
Match: A0A6V1S6L4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1S6L4_HETAK)

HSP 1 Score: 246 bits (629), Expect = 7.140e-77
Identity = 124/175 (70.86%), Postives = 147/175 (84.00%), Query Frame = 1
Query:    4 SGEAFAIKTIKKSKVPRLVLLKREIDILRTVDHPTLIRLEDVYEDEVNLHLVTELCTGGELFDRILAKTESEEGHYSERDAAIIVHKILGAIEYIHNEHNICHRDLKPENFLFKTEDDQADLKIIDFGLSRFEDGSE--AMTTRVGTPYYIAPEVLQKKYDKACDLWSIGVIMYI 522
            +GE FAIKTI+K+KV R+  L+REI+I++++DHP++I+L DV+EDE  LHL+T+LCTGGELFDRI+ KT+SEEGHYSERDAA +V  IL AI Y HN H ICHRDLKPENFLF++ DD A LKIIDFGLSR ED  +   MTTRVGTPYYIAPEVL + Y KACDLWSIGVIMYI
Sbjct:   80 TGEWFAIKTIRKAKVNRIESLRREIEIMQSIDHPSIIKLYDVFEDEKYLHLITQLCTGGELFDRIIEKTKSEEGHYSERDAANLVKAILDAIAYCHNLH-ICHRDLKPENFLFESPDDNAALKIIDFGLSRVEDMGKQGVMTTRVGTPYYIAPEVLGRHYTKACDLWSIGVIMYI 253          
BLAST of mRNA_S-dermatodea_contig12712.1660.1 vs. uniprot
Match: A0A7S2VWQ7_9STRA (Hypothetical protein n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2VWQ7_9STRA)

HSP 1 Score: 238 bits (608), Expect = 1.290e-73
Identity = 116/175 (66.29%), Postives = 144/175 (82.29%), Query Frame = 1
Query:    4 SGEAFAIKTIKKSKVPRLVLLKREIDILRTVDHPTLIRLEDVYEDEVNLHLVTELCTGGELFDRILAKTESEEGHYSERDAAIIVHKILGAIEYIHNEHNICHRDLKPENFLFKTEDDQADLKIIDFGLSRFEDGSEA--MTTRVGTPYYIAPEVLQKKYDKACDLWSIGVIMYI 522
            SG+ FAIK+I+K KV ++ +LKREI+IL+ V HP +I L +VYEDE  LHLVTELCTGGELFDRI+AKT+S+EGH+SE DAA I+ +I+ AI Y H+  +ICHRDLKPENFLF+T D+ + +KIIDFGLSR ED S    M T+VGTPYY+APEVL K+YDK+CD+WSIGVI YI
Sbjct:   87 SGQWFAIKSIRKKKVGKIDVLKREIEILKEVTHPNIINLHEVYEDEKYLHLVTELCTGGELFDRIIAKTQSKEGHFSEHDAAEIIKEIIEAIAYCHDIKHICHRDLKPENFLFETPDEHSKIKIIDFGLSRHEDTSPTHMMKTKVGTPYYVAPEVLNKEYDKSCDMWSIGVITYI 261          
BLAST of mRNA_S-dermatodea_contig12712.1660.1 vs. uniprot
Match: A0A7S4MR99_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MR99_9STRA)

HSP 1 Score: 225 bits (574), Expect = 1.110e-72
Identity = 109/168 (64.88%), Postives = 138/168 (82.14%), Query Frame = 1
Query:    4 SGEAFAIKTIKKSKVPRLVLLKREIDILRTVDHPTLIRLEDVYEDEVNLHLVTELCTGGELFDRILAKTESEEGHYSERDAAIIVHKILGAIEYIHNEHNICHRDLKPENFLFKTEDDQADLKIIDFGLSRFEDGSEA-MTTRVGTPYYIAPEVLQKKYDKACDLWSI 504
            S E +AIK+I+KSKV ++ +L+RE+ +LR V HP +I+L DVYED   LHL+TELCTGGELFDRI+AKT+S+EGH+SERDAA+IV  IL AI Y H++  I HRDLKPENFLFKTE+D AD+KIIDFGLSR +  +   M T+VGTPYY+APEVL ++Y K+CD+WSI
Sbjct:   13 SKEWYAIKSIRKSKVGKIEVLRREVGLLREVSHPNIIKLVDVYEDVKYLHLITELCTGGELFDRIIAKTQSDEGHFSERDAAVIVRCILDAIAYCHDKKQIVHRDLKPENFLFKTEEDDADIKIIDFGLSRHDTQNYGVMKTKVGTPYYVAPEVLNREYTKSCDIWSI 180          
BLAST of mRNA_S-dermatodea_contig12712.1660.1 vs. uniprot
Match: A0A7S1B6U7_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B6U7_9STRA)

HSP 1 Score: 238 bits (606), Expect = 3.860e-72
Identity = 117/172 (68.02%), Postives = 144/172 (83.72%), Query Frame = 1
Query:   10 EAFAIKTIKKSKVPRLVLLKREIDILRTVDHPTLIRLEDVYEDEVNLHLVTELCTGGELFDRILAKTESEEGHYSERDAAIIVHKILGAIEYIHNEHNICHRDLKPENFLFKTEDDQADLKIIDFGLSRFE-DGSEAMTTRVGTPYYIAPEVLQKKYDKACDLWSIGVIMYI 522
            E FAIK+I+KSKV ++ LLKREI IL+ ++HP +I+L +V+ED   LHL+TELCTGGELFDRI+AKTE+EEGH+SERDAA IVH IL AIEY H+E NICHRDLKPENFLF T ++ + +KIIDFGLSR E   S  M T+VGTPYY+APEVL+++Y K+CD+WSIGVI YI
Sbjct:  210 EWFAIKSIRKSKVGKIELLKREIAILKEMNHPNIIKLHEVHEDTKYLHLITELCTGGELFDRIIAKTETEEGHFSERDAAKIVHSILKAIEYCHDEKNICHRDLKPENFLFYTAEENSHIKIIDFGLSRNELPESGIMQTKVGTPYYVAPEVLRREYTKSCDIWSIGVITYI 381          
BLAST of mRNA_S-dermatodea_contig12712.1660.1 vs. uniprot
Match: A0A812RCN9_SYMMI (Calmodulin (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812RCN9_SYMMI)

HSP 1 Score: 229 bits (585), Expect = 4.890e-71
Identity = 113/171 (66.08%), Postives = 137/171 (80.12%), Query Frame = 1
Query:   10 EAFAIKTIKKSKVPRLVLLKREIDILRTVDHPTLIRLEDVYEDEVNLHLVTELCTGGELFDRILAKTESEEGHYSERDAAIIVHKILGAIEYIHNEHNICHRDLKPENFLFKTEDDQADLKIIDFGLSRFEDGSEAMTTRVGTPYYIAPEVLQKKYDKACDLWSIGVIMYI 522
            E FA+KTIKKSKV RL  LKREI+IL+T+DHP +I+L DV+ED+  LHLVTELCTGGELFDRI+ KT+     +  +DA+ I+  +L AIEY H+ HNICHRDLKPENFLF T    + LKIIDFGLSR++D  E M+T+VGTPYYIAPEVL +KYDK CDLWSIGV+ Y+
Sbjct:   33 EYFAVKTIKKSKVGRLETLKREIEILKTMDHPNIIKLYDVFEDDKYLHLVTELCTGGELFDRIIEKTKM----HVLKDASQIIKSVLNAIEYCHHVHNICHRDLKPENFLFATPAADSQLKIIDFGLSRYDDEIEHMSTKVGTPYYIAPEVLTRKYDKECDLWSIGVVTYV 199          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12712.1660.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJD5_ECTSI9.310e-10484.57Calcium-dependent protein kinase, isoform 2 (CDPK ... [more]
A0A835ZG53_9STRA9.700e-9282.84Calcium-dependent protein kinase n=1 Tax=Tribonema... [more]
W7T8G8_9STRA5.970e-8776.30Calcium-dependent protein n=3 Tax=Monodopsidaceae ... [more]
A0A6H5L236_9PHAE3.110e-8273.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CG63_9STRA4.000e-8172.83Calcium-dependent protein kinase n=1 Tax=Tribonema... [more]
A0A6V1S6L4_HETAK7.140e-7770.86Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2VWQ7_9STRA1.290e-7366.29Hypothetical protein n=1 Tax=Triparma pacifica Tax... [more]
A0A7S4MR99_9STRA1.110e-7264.88Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A7S1B6U7_9STRA3.860e-7268.02Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A812RCN9_SYMMI4.890e-7166.08Calmodulin (Fragment) n=1 Tax=Symbiodinium microad... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12712contigS-dermatodea_contig12712:1560..4470 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score231.5
Seed ortholog evalue3e-58
Seed eggNOG ortholog2850.Phatr25067
KEGG koko:K13412
KEGG Pathwayko04626,ko05145,map04626,map05145
GOsGO:0000165,GO:0000187,GO:0001817,GO:0001932,GO:0001934,GO:0002218,GO:0002221,GO:0002224,GO:0002237,GO:0002253,GO:0002376,GO:0002682,GO:0002684,GO:0002757,GO:0002758,GO:0002764,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004683,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006082,GO:0006464,GO:0006468,GO:0006690,GO:0006691,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006897,GO:0006907,GO:0006950,GO:0006952,GO:0006954,GO:0006974,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008150,GO:0008152,GO:0009605,GO:0009607,GO:0009617,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009931,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010468,GO:0010562,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010646,GO:0010647,GO:0010857,GO:0015630,GO:0016192,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018105,GO:0018193,GO:0018209,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019752,GO:0019899,GO:0019900,GO:0019901,GO:0023014,GO:0023051,GO:0023052,GO:0023056,GO:0031323,GO:0031324,GO:0031325,GO:0031329,GO:0031330,GO:0031347,GO:0031349,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032147,GO:0032268,GO:0032270,GO:0032496,GO:0032675,GO:0032680,GO:0033554,GO:0033674,GO:0033993,GO:0034097,GO:0035556,GO:0035924,GO:0036211,GO:0042221,GO:0042325,GO:0042327,GO:0043085,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043405,GO:0043406,GO:0043408,GO:0043410,GO:0043412,GO:0043436,GO:0043487,GO:0043488,GO:0043489,GO:0043549,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044351,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0045088,GO:0045089,GO:0045859,GO:0045860,GO:0045934,GO:0045937,GO:0046777,GO:0048010,GO:0048255,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051019,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051239,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051338,GO:0051347,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070848,GO:0070887,GO:0070935,GO:0071310,GO:0071363,GO:0071704,GO:0071900,GO:0071902,GO:0080090,GO:0080134,GO:0080135,GO:0098657,GO:0140096,GO:1900034,GO:1901564,GO:1901568,GO:1901700,GO:1902369,GO:1902373,GO:1902531,GO:1902533,GO:1903311,GO:1903312,GO:1903555
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGsKOG0032@1,KOG0032@2759
Ec32 ortholog descriptionCalcium-dependent protein kinase
Ec32 orthologEc-17_001910.1
EC2.7.11.1
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Hectar predicted targeting categoryother localisation
Exons6
Model size524
Cds size522
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12712.1660.1prot_S-dermatodea_contig12712.1660.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12712 1560..4469 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924258.6237488-CDS-S-dermatodea_contig12712:1559..16041622924258.6237488-CDS-S-dermatodea_contig12712:1559..1604Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12712 1560..1604 +
1694079131.127306-CDS-S-dermatodea_contig12712:1559..16041694079131.127306-CDS-S-dermatodea_contig12712:1559..1604Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12712 1560..1604 +
1622924258.6327128-CDS-S-dermatodea_contig12712:2208..23191622924258.6327128-CDS-S-dermatodea_contig12712:2208..2319Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12712 2209..2319 +
1694079131.1417701-CDS-S-dermatodea_contig12712:2208..23191694079131.1417701-CDS-S-dermatodea_contig12712:2208..2319Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12712 2209..2319 +
1622924258.6409357-CDS-S-dermatodea_contig12712:2824..29401622924258.6409357-CDS-S-dermatodea_contig12712:2824..2940Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12712 2825..2940 +
1694079131.1520581-CDS-S-dermatodea_contig12712:2824..29401694079131.1520581-CDS-S-dermatodea_contig12712:2824..2940Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12712 2825..2940 +
1622924258.6487436-CDS-S-dermatodea_contig12712:3417..35051622924258.6487436-CDS-S-dermatodea_contig12712:3417..3505Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12712 3418..3505 +
1694079131.1622443-CDS-S-dermatodea_contig12712:3417..35051694079131.1622443-CDS-S-dermatodea_contig12712:3417..3505Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12712 3418..3505 +
1622924258.6567576-CDS-S-dermatodea_contig12712:3816..39161622924258.6567576-CDS-S-dermatodea_contig12712:3816..3916Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12712 3817..3916 +
1694079131.173677-CDS-S-dermatodea_contig12712:3816..39161694079131.173677-CDS-S-dermatodea_contig12712:3816..3916Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12712 3817..3916 +
1622924258.6676664-CDS-S-dermatodea_contig12712:4407..44691622924258.6676664-CDS-S-dermatodea_contig12712:4407..4469Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12712 4408..4469 +
1694079131.1831055-CDS-S-dermatodea_contig12712:4407..44691694079131.1831055-CDS-S-dermatodea_contig12712:4407..4469Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12712 4408..4469 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12712.1660.1

>prot_S-dermatodea_contig12712.1660.1 ID=prot_S-dermatodea_contig12712.1660.1|Name=mRNA_S-dermatodea_contig12712.1660.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=174bp
ASGEAFAIKTIKKSKVPRLVLLKREIDILRTVDHPTLIRLEDVYEDEVNL
HLVTELCTGGELFDRILAKTESEEGHYSERDAAIIVHKILGAIEYIHNEH
NICHRDLKPENFLFKTEDDQADLKIIDFGLSRFEDGSEAMTTRVGTPYYI
APEVLQKKYDKACDLWSIGVIMYI
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mRNA from alignment at S-dermatodea_contig12712:1560..4470+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12712.1660.1 ID=mRNA_S-dermatodea_contig12712.1660.1|Name=mRNA_S-dermatodea_contig12712.1660.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2911bp|location=Sequence derived from alignment at S-dermatodea_contig12712:1560..4470+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCAAGTGGCGAAGCTTTCGCGATCAAGACCATAAAGAAGAGCAAGGTAAG ACTATACGTCCTTGCAACCAAGGCATATGGCTGCACCCAAGCCTACTGTA TACTACATTAATAGGGAATCGCCGTGAGCAGTACCGCGAGTGTTCGGGCC CAAGAACTGTAGCATAATGCCGGGTATGCCGCCCTCTCTCGTTGGTAGTA TGACATCGATTTTTGTGTTATCAAGCTTACAACCGACCGGATCACCAATG GTTTCCGATCCCGCTCGTAGTCCGATGAGAAATCGAGAGTTTGAAAAACA CCCGATGGAACTACCTATGTATAGTATAATACATATTCAGAAGGAATTGA CACATGTGCGGTAACAAGCTGTTGATGATGGATGCAATTGTCGTTGATAA TATTATATGGCATTGAGTAATAGTATGCGGTAACCAGCTGTTGATTATGG ACGCAAAATGTACTTAAGAAATGTGGTTGAATCATATGACGCAAAGAGCA ACGAAGGCCGCCGATGTCGCCTACTGCACATCACGAACACGCAGCTTTCG ATGGCACAAAATGTCCGGCTACACGCCCGGGGGGGGGGGGGGGGAGACCC TCATCACATTTAGGGCATACACCCAAACATGCCAACATGATGCGAGCAGG TGCCTCGATTAGTGCTGCTCAAGCGAGAGATCGACATCCTCCGTACCGTG GACCATCCCACATTGATACGTCTTGAGGATGTCTACGAAGATGAGGTCAA CTTGCATCTGGTGAGAAAATACAATTATTAAGGCAACTTGTGTGTCATGT GGATAAAGCACGATTACATGGAGCGTATTTCTCAGGATGTACCCCTAGCA GTACCCCTAGCATAGTCTTACCAAAACGCTGATAGCTAACTTTCCTATGA TCCAGCACCTGAATTCTGCAGACGAATCGTGCGGAAGTCTTCACGATGAT TAGTGCCTAAAGCATCCGCGTCAACAATGCTGTGTCATCGAGTTTTTACC ACCTTTGCGGCTTCAGCGCTTTTTAAGCGTGCTCGCTATATTAGACCTGC GGGATCCCAGGAGTGTTATGTTGCGGGGGCTTTTCCAAACTGTGCTCGCA GTGGTCCTGATGAGCTACTGGTAGCGGCGGTAACTACGTGCAGCCCACAA AGTCCAGACTTCTCCACCCATTTTGCCGGCTAGCCCGCGTAATGGCCGAG CATGGTGTAGTAGTGCTCCAGCAGCTACTTGGATGGTTCGGTCAACAAAG CACTGTTTTGGCCAGGTGACCGAGCTATGCACTGGGGGAGAGTTGTTCGA CAGAATACTCGCGAAGACAGAGTCAGAGGAAGGCCACTACAGCGAACGGG ATGCGGCTATCATCGTGCACAAAATTCTGGGGTAAGGGCAAGGCACTGAA TAACCATTCCCATAGGCTGCTGGAAACAGGTCTCAGAGCCCCTCAATGGC TTGCGTTTGGGTGTCCTCCTTGTGTTGGGTACAGCGCACACTTGATGTAA GCAGCGCGAGGCCACCGTGATTGTCATCAGCATGGTCCGTATGTATAGGT TGATCGATTTTTCAGTTTCTCGTGTGGCATGCCCGTGTTGCTCCTCCTTT GCCGATTAATGCATGCAAGTCTTAGAGGCGTGCGCTCCAGGGGAGGTGGA GAATATATAGCAGAAGGCCTTCCGTGAGCAATTGGTACTGTCTTGCGACC AGCGGACGGCAGTTTTCTCCATTACTAATAGAGCGATAGGATAGGTGTCG GTAGGTGAACACGTTACCCTTTCCCCTCCATCAACGAATAACAAGTGAAT ATGTAGCCTCAGTGAACCAGGCAAAGTCGTCACGCGGCATATCATGGTTC ACTCACAGGGCGATTGAGTACATCCACAACGAGCACAACATCTGCCATCG CGACCTCAAGCCGGAGAACTTCCTCTTCAAGACGGAGGATGACCAGGTGC ACGCTCCAGACTACTTGCCGCAGAAGTCGACTCACACCTTCACACTCATG CGTGCGGCTGCATTCCCCTACTTCCGCATTGCACTCGAGACTCATCCTTC CCACTCCGTACGGCCATGTCCCCCGCTAGCACTTTTGCATGGGCCTGAGA ACGTGCTGTTTTCCCGGTGTATGCTATGAGCGCTCTAAACTAAATTTTGC CTAGACCCAGCTTGTGCTATAATATATGAACTCTGACAAAAACAACTCGT CGACTCCAGACCTTGTCTTCGCCGTAATACAATCGCAAACGATTTGGTGT TTTGCAGGCTGACCTGAAGATCATCGATTTCGGACTGTCACGGTTCGAGG ACGGCTCTGAAGCTATGACCACCAGGGTGGGCACGCCGTACTACATTGCA CCAGAAGGTACGGTTATAAAGTCAAGGCGATAAGTTCGCGCGATCTACTC TATCGTTGTGGGGGAGGCACAATATTTGAAAACATCCCAGCAGCACCTAC TCGCGTCCTTTCCATTCGCCCGAACCCGTTGGTAAGTAGATTAAGACCGG AGGGTGGCATCGCCGAACCGCCTCGAGTTCCTGTGCTCATCCCATCATGG CTTTTCCCGCGGTCCATTATGTCCAGTGCCATATTTATAATTAATACCGC TCTGAACGTTTTTTTATAGCAATTTTAGAGTGGCCATGCCAACACTATTT CCTAGACGACTTTGTCCAACAAACTCCTCTACGATTTTTGAGACCGGCTT GTATGCCAAACAAATTGGTTTTTGTGTGGAGCGCCAAGCAACTTGATTTT GGAGTTGAGCCACCACGCACACCTCACGGGCGCAGCCGTGGCTACCTACT AGTACATACAGCGTATACCCGAACACCTTTTCCCTTCTTGTTAAACAGTG CTGCAGAAAAAATACGACAAGGCGTGCGACTTGTGGTCCATTGGGGTAAT CATGTACATCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig12712:1560..4470+

>mRNA_S-dermatodea_contig12712.1660.1 ID=mRNA_S-dermatodea_contig12712.1660.1|Name=mRNA_S-dermatodea_contig12712.1660.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1044bp|location=Sequence derived from alignment at S-dermatodea_contig12712:1560..4470+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCAAGTGGCGAAGCTTTCGCGATCAAGACCATAAAGAAGAGCAAGGCAAG
TGGCGAAGCTTTCGCGATCAAGACCATAAAGAAGAGCAAGGTGCCTCGAT
TAGTGCTGCTCAAGCGAGAGATCGACATCCTCCGTACCGTGGACCATCCC
ACATTGATACGTCTTGAGGATGTCTACGAAGATGAGGTCAACTTGCATCT
GGTGCCTCGATTAGTGCTGCTCAAGCGAGAGATCGACATCCTCCGTACCG
TGGACCATCCCACATTGATACGTCTTGAGGATGTCTACGAAGATGAGGTC
AACTTGCATCTGGTGACCGAGCTATGCACTGGGGGAGAGTTGTTCGACAG
AATACTCGCGAAGACAGAGTCAGAGGAAGGCCACTACAGCGAACGGGATG
CGGCTATCATCGTGCACAAAATTCTGGGGTGACCGAGCTATGCACTGGGG
GAGAGTTGTTCGACAGAATACTCGCGAAGACAGAGTCAGAGGAAGGCCAC
TACAGCGAACGGGATGCGGCTATCATCGTGCACAAAATTCTGGGGGCGAT
TGAGTACATCCACAACGAGCACAACATCTGCCATCGCGACCTCAAGCCGG
AGAACTTCCTCTTCAAGACGGAGGATGACCAGGGCGATTGAGTACATCCA
CAACGAGCACAACATCTGCCATCGCGACCTCAAGCCGGAGAACTTCCTCT
TCAAGACGGAGGATGACCAGGCTGACCTGAAGATCATCGATTTCGGACTG
TCACGGTTCGAGGACGGCTCTGAAGCTATGACCACCAGGGTGGGCACGCC
GTACTACATTGCACCAGAAGGCTGACCTGAAGATCATCGATTTCGGACTG
TCACGGTTCGAGGACGGCTCTGAAGCTATGACCACCAGGGTGGGCACGCC
GTACTACATTGCACCAGAAGTGCTGCAGAAAAAATACGACAAGGCGTGCG
ACTTGTGGTCCATTGGGGTAATCATGTACATCTGCTGCAGAAAAAATACG
ACAAGGCGTGCGACTTGTGGTCCATTGGGGTAATCATGTACATC
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