mRNA_S-dermatodea_contig12695.1654.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12695.1654.1
Unique NamemRNA_S-dermatodea_contig12695.1654.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12695.1654.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12695contigS-dermatodea_contig12695:6268..6940 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size673
Cds size372
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12695.1654.1prot_S-dermatodea_contig12695.1654.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12695 6438..6809 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924258.1307435-UTR-S-dermatodea_contig12695:6267..64371622924258.1307435-UTR-S-dermatodea_contig12695:6267..6437Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12695 6268..6437 +
1694079130.7596326-UTR-S-dermatodea_contig12695:6267..64371694079130.7596326-UTR-S-dermatodea_contig12695:6267..6437Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12695 6268..6437 +
1622924258.150887-UTR-S-dermatodea_contig12695:6809..69401622924258.150887-UTR-S-dermatodea_contig12695:6809..6940Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12695 6810..6940 +
1694079130.778169-UTR-S-dermatodea_contig12695:6809..69401694079130.778169-UTR-S-dermatodea_contig12695:6809..6940Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12695 6810..6940 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924258.142956-CDS-S-dermatodea_contig12695:6437..68091622924258.142956-CDS-S-dermatodea_contig12695:6437..6809Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12695 6438..6809 +
1694079130.7690058-CDS-S-dermatodea_contig12695:6437..68091694079130.7690058-CDS-S-dermatodea_contig12695:6437..6809Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12695 6438..6809 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12695.1654.1

>prot_S-dermatodea_contig12695.1654.1 ID=prot_S-dermatodea_contig12695.1654.1|Name=mRNA_S-dermatodea_contig12695.1654.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=124bp
MEACMRQQRLPPHGRADCVCVCVCVCDGSERAPREENQSLRRRIAGFCEA
ASNLECRPGFGCVSIYFHRTVYLCATGRRGVKGVCVCGGVVRTVAAVLFY
AAPWQSSFYCCSGIHVRTLALPR*
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mRNA from alignment at S-dermatodea_contig12695:6268..6940+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12695.1654.1 ID=mRNA_S-dermatodea_contig12695.1654.1|Name=mRNA_S-dermatodea_contig12695.1654.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=673bp|location=Sequence derived from alignment at S-dermatodea_contig12695:6268..6940+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGCGACGAGACGGGGGGGGGGAAACTTGTCGAAAATATGAACCCCACTG
GATGATTGATGTCATGGATGTCGCGAAGGTCGTCTGGTCTGCGTCGCGGG
CGCACCACGCCGGCCTTTGTTTGTGTTGTCTTGACCCCTTTTTTTTTGTT
TTTGTTTCGGGCCGCGTTCGATGGAGGCATGTATGCGGCAGCAACGCCTT
CCTCCCCACGGCCGCGCAGATTGTGTGTGTGTGTGTGTTTGTGTGTGTGA
TGGGAGCGAGCGAGCGCCTCGAGAAGAAAATCAATCGCTTCGACGACGGA
TTGCAGGTTTTTGCGAAGCTGCTTCTAACCTCGAATGCCGGCCCGGTTTC
GGCTGTGTAAGCATTTATTTTCATCGCACCGTATATTTGTGTGCGACTGG
AAGGAGAGGGGTAAAGGGTGTATGTGTGTGTGGGGGGGTGGTGAGAACGG
TGGCCGCAGTTTTGTTTTACGCTGCACCCTGGCAATCGTCTTTTTATTGC
TGTTCTGGTATCCACGTGCGTACGCTCGCATTGCCGAGATGATGGGTCAT
TTTCGCTTGCGCTTGCTCTCTCGCGCGCGCGGAGGTTCTTCCCCTCGCTT
GGTGAACGTGACAAGCCACCACTATACCACGTGTTCTGTTCACGTCCGTG
TTGTGGGACCTCTTGCTGCCCCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig12695:6268..6940+

>mRNA_S-dermatodea_contig12695.1654.1 ID=mRNA_S-dermatodea_contig12695.1654.1|Name=mRNA_S-dermatodea_contig12695.1654.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=744bp|location=Sequence derived from alignment at S-dermatodea_contig12695:6268..6940+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAGGCATGTATGCGGCAGCAACGCCTTCCTCCCCACGGCCGCGCAGA
TTGTGTGTGTGTGTGTGTTTGTGTGTGTGATGGGAGCGAGCGAGCGCCTC
GAGAAGAAAATCAATCGCTTCGACGACGGATTGCAGGTTTTTGCGAAGCT
GCTTCTAACCTCGAATGCCGGCCCGGTTTCGGCTGTGTAAGCATTTATTT
TCATCGCACCGTATATTTGTGTGCGACTGGAAGGAGAGGGGTAAAGGGTG
TATGTGTGTGTGGGGGGGTGGTGAGAACGGTGGCCGCAGTTTTGTTTTAC
GCTGCACCCTGGCAATCGTCTTTTTATTGCTGTTCTGGTATCCACGTGCG
TACGCTCGCATTGCCGAGATGAATGGAGGCATGTATGCGGCAGCAACGCC
TTCCTCCCCACGGCCGCGCAGATTGTGTGTGTGTGTGTGTTTGTGTGTGT
GATGGGAGCGAGCGAGCGCCTCGAGAAGAAAATCAATCGCTTCGACGACG
GATTGCAGGTTTTTGCGAAGCTGCTTCTAACCTCGAATGCCGGCCCGGTT
TCGGCTGTGTAAGCATTTATTTTCATCGCACCGTATATTTGTGTGCGACT
GGAAGGAGAGGGGTAAAGGGTGTATGTGTGTGTGGGGGGGTGGTGAGAAC
GGTGGCCGCAGTTTTGTTTTACGCTGCACCCTGGCAATCGTCTTTTTATT
GCTGTTCTGGTATCCACGTGCGTACGCTCGCATTGCCGAGATGA
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