mRNA_S-dermatodea_contig12692.1652.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12692.1652.1
Unique NamemRNA_S-dermatodea_contig12692.1652.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12692.1652.1 vs. uniprot
Match: D7FQY2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQY2_ECTSI)

HSP 1 Score: 140 bits (354), Expect = 5.000e-38
Identity = 74/133 (55.64%), Postives = 94/133 (70.68%), Query Frame = 1 
Query:  214 LQRICDGLVEGAMPGD---VEDLVMEVEAGHFEQASVWAKTWTPMRCVIAEVPDI-------LSVSVLVLPSGEKLEWQRHDKADSVSKELFGNVVVTDLELQGSDSARKLEQQELEATYTDAWAVGGSEESD 582
            LQR+ + L       D   VE+L+ EV++  F QASVW ++WT MRCV+A+  +        +S+SVLVLP G KLEW R+ +A S S++LFGN+ + D ELQGSD+ARKLEQQELEATY D WAVGGSEESD
Sbjct:   14 LQRLAEALRADPNLADLHNVEELMTEVDSDAFPQASVWERSWTSMRCVVADTAETPPSLSTCISMSVLVLPRGTKLEWHRYHEARSFSRQLFGNLSICDAELQGSDNARKLEQQELEATYADGWAVGGSEESD 146
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12692.1652.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQY2_ECTSI5.000e-3855.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12692contigS-dermatodea_contig12692:1311..3719 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-09_003310.1
Exons3
Model size584
Cds size558
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12692.1652.1prot_S-dermatodea_contig12692.1652.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12692 1311..3695 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924258.0684521-CDS-S-dermatodea_contig12692:1310..13931622924258.0684521-CDS-S-dermatodea_contig12692:1310..1393Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12692 1311..1393 -
1694079130.7175896-CDS-S-dermatodea_contig12692:1310..13931694079130.7175896-CDS-S-dermatodea_contig12692:1310..1393Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12692 1311..1393 -
1622924258.0785-CDS-S-dermatodea_contig12692:1746..18481622924258.0785-CDS-S-dermatodea_contig12692:1746..1848Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12692 1747..1848 -
1694079130.7290628-CDS-S-dermatodea_contig12692:1746..18481694079130.7290628-CDS-S-dermatodea_contig12692:1746..1848Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12692 1747..1848 -
1622924258.0854387-CDS-S-dermatodea_contig12692:3322..36951622924258.0854387-CDS-S-dermatodea_contig12692:3322..3695Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12692 3323..3695 -
1694079130.7371068-CDS-S-dermatodea_contig12692:3322..36951694079130.7371068-CDS-S-dermatodea_contig12692:3322..3695Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12692 3323..3695 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924258.100482-UTR-S-dermatodea_contig12692:3695..37191622924258.100482-UTR-S-dermatodea_contig12692:3695..3719Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12692 3696..3719 -
1694079130.7467866-UTR-S-dermatodea_contig12692:3695..37191694079130.7467866-UTR-S-dermatodea_contig12692:3695..3719Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12692 3696..3719 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12692.1652.1

>prot_S-dermatodea_contig12692.1652.1 ID=prot_S-dermatodea_contig12692.1652.1|Name=mRNA_S-dermatodea_contig12692.1652.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=186bp
MVKFVGRRRSVFTGGILVLCAEVGVAFRVGTSLNTARPSNDIIARRQSTR
RASAVRGNKQDTLLQRICDGLVEGAMPGDVEDLVMEVEAGHFEQASVWAK
TWTPMRCVIAEVPDILSVSVLVLPSGEKLEWQRHDKADSVSKELFGNVVV
TDLELQGSDSARKLEQQELEATYTDAWAVGGSEESD
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mRNA from alignment at S-dermatodea_contig12692:1311..3719-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12692.1652.1 ID=mRNA_S-dermatodea_contig12692.1652.1|Name=mRNA_S-dermatodea_contig12692.1652.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2409bp|location=Sequence derived from alignment at S-dermatodea_contig12692:1311..3719- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGTCGGGTGTGCGTGCACGTTATCATGGTTAAGTTCGTTGGCCGCCGTCG
ATCGGTCTTCACGGGAGGTATTCTTGTTTTGTGTGCAGAGGTGGGTGTGG
CGTTCAGGGTTGGAACCAGCTTGAACACAGCCCGGCCGAGCAACGACATT
ATTGCCAGGAGGCAATCGACTCGGCGAGCGTCAGCCGTACGTGGCAACAA
GCAGGACACACTGCTGCAGCGCATATGCGATGGGCTGGTGGAAGGGGCTA
TGCCGGGGGATGTGGAGGACCTCGTGATGGAGGTGGAAGCGGGGCACTTC
GAGCAAGCTTCTGTCTGGGCCAAGACGTGGACGCCTATGCGCTGTGTCAT
CGCGGAGGTTCCCGACATCCTGTCAGTCAGCGTTCTCGTGCTTCCAAGTG
GGTTCCTTTTTTCCTTTGCTTTCTTCCATGGTCCTTAGTTTTTGTAGACG
TACTGGAGTCTGTCTACTCTAGGCGGCTTCCCTGTCGAGGTGATGCCTTT
TGGGCTCCAGGCAGACTTGCGTGTGCCAGCTTCTGTCCGTCTGAATGAAC
TGGAACCGGAGCACATACATACATATAATACATGAACACATAATCGGCAG
ATAACTACTGTGAATATTTACGCGAAACGGCTCCGAGAGCGAATCGGAAC
AAGCGGCGTAACTGTTTGGGCGACAGGTCCGCGGCTTTCCGGCCAAGTTT
TCGCTCTGCCCATTCCAGCAGAGACCCCCCGCGTAGCCACTGACTCATGA
TCCTCGTGCGCGAAAAAAGGAGAAATCTCTGATGTCGGATTGCCGATTTA
TCTCACACCAACCGCGCCACTCTGTCAGGAGAATCGTTTGCTGAAAGTCC
TTCTTGCGTGCGATTTCGTTACATTTGTACTTTTGACAAGGGCAACTCGT
TTCTTGTGACACGATGTGTAGACACTATTATGAAGGTACACTATAATCAA
GTAATAAGGACAAAATCTCATGACCATGAATACCCAACTATTCCGACCGT
GAAAATCATACCTCGAGATAAAATTTTGGTGAGAGCCATGTTTAACATGG
TGTCCAAAGGTATGTGCTGGCACCAATAATGCGCACTGGGGAGCCCAGGT
AGCATGTATGCAGCGGAACTCTAGACGCAGCCTGGACAGGCGAGGCCGCG
CGCATTCGGTTGCGTGGGTGGCTCTTTAGCTGCTTGGGTGCGGAGACCAA
GGGGATAAACGGGTCCACCTTTTACAGTAGTTTTCACTTTTTCAGGGGAA
CCTTTTTCATGCAACGCTGCGATCAGGCCAGCCATCGAAGTATATGCGCT
GCTGCCTGATCAGGTGCACCCGCGTCGAACCTCAAACAAGGACACCCACG
ATGAGAATAACCTGGCAGGGCGAGATGTACCCACCCTCAAATGTTCCTCG
TCAAGCTGCCAAGGTGTCGCCAAACCGCCAAACAGCGGTATGATATGATA
CTGACAAGGCATCTAAAGAGTGCGCGCTGAGCTCATGTTTTCCGGTTGGA
TCCGCGTGGGACGAGGGAGCCAGAGGGCGCTGGACAGTTGGAAAACAGTG
GCAAGAGAAGCAAAACAGACAACCGAACAAAAAAACGTTTTTCTCCAACG
CGCTAATGTGGCGCTTCACTTTCTCCCGCGTATACATTTGAGGCATCATG
CAAAATCGAAGCTCCGATCGGGACGGACGGGCGCACACGTCCCCATTGTT
GCGCAAGTATGCTTGCTATCCCACCCCTAGTGCGCCGCCTGGTCTCCTTG
CGAACATTTTCGTCGGGGGTAGTCTGACCCGTCTGCGGAGATAGCAAACC
AACACCGTATATATACGTCCTCGGACCCAGTCCCTCGTTGACATATTCGC
TCTCAAATTTACGCTGTCCAGGTGGAGAGAAGCTTGAGTGGCAGCGACAC
GACAAGGCTGACAGCGTTTCAAAGGAGCTCTTCGGGAATGTGGTGGTCAC
AGACCTTGAGCTTCAGGGCTCCGGTGAGACTCGGTGGAACGCCGCGTTGT
GCAACAAAAGGGGGCCAGACTGCGCTCGCTCCAGTTTCGAGCGGAAAAGG
CGGCCCGCGTCCCACAGTCCCGACCTTGCCAGCAGGACACGCTTAAGCTT
GTCGCCACGTAGCATTGCGGTACACATCCATCAGTTAAAACAGCACACCA
TGTTTTTTTACACTGCTTTCTAACATATGCGTGCGGCGATAACAAAAACC
TGGAGATTTCGAAAAGGCTGAATGACCCCCCCCCCCCCTTTTTCGGGTTC
GTACGTACATATCTGGCCCTGTATCATTTTGCTTCAACTGTGCGCGCTAC
GGTCGATGCAAACGTGCTACCTCCAGACTCCGCGCGAAAGCTGGAGCAGC
AGGAGCTCGAGGCAACGTATACGGACGCTTGGGCGGTCGGGGGAAGCGAG
GAGAGCGAT
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Coding sequence (CDS) from alignment at S-dermatodea_contig12692:1311..3719-

>mRNA_S-dermatodea_contig12692.1652.1 ID=mRNA_S-dermatodea_contig12692.1652.1|Name=mRNA_S-dermatodea_contig12692.1652.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1116bp|location=Sequence derived from alignment at S-dermatodea_contig12692:1311..3719- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTTAAGTTCGTTGGCCGCCGTCGATCGGTCTTCACGGGAGGTATTCT
TGTTTTGTGTGCAGAGGTGGGTGTGGCGTTCAGGGTTGGAACCAGCTTGA
ACACAGCCCGGCCGAGCAACGACATTATTGCCAGGAGGCAATCGACTCGG
CGAGCGTCAGCCGTACGTGGCAACAAGCAGGACACACTGCTGCAGCGCAT
ATGCGATGGGCTGGTGGAAGGGGCTATGCCGGGGGATGTGGAGGACCTCG
TGATGGAGGTGGAAGCGGGGCACTTCGAGCAAGCTTCTGTCTGGGCCAAG
ACGTGGACGCCTATGCGCTGTGTCATCGCGGAGGTTCCCGACATCCTGTC
AGTCAGCGTTCTCGTGCTTCCAAATGGTTAAGTTCGTTGGCCGCCGTCGA
TCGGTCTTCACGGGAGGTATTCTTGTTTTGTGTGCAGAGGTGGGTGTGGC
GTTCAGGGTTGGAACCAGCTTGAACACAGCCCGGCCGAGCAACGACATTA
TTGCCAGGAGGCAATCGACTCGGCGAGCGTCAGCCGTACGTGGCAACAAG
CAGGACACACTGCTGCAGCGCATATGCGATGGGCTGGTGGAAGGGGCTAT
GCCGGGGGATGTGGAGGACCTCGTGATGGAGGTGGAAGCGGGGCACTTCG
AGCAAGCTTCTGTCTGGGCCAAGACGTGGACGCCTATGCGCTGTGTCATC
GCGGAGGTTCCCGACATCCTGTCAGTCAGCGTTCTCGTGCTTCCAAGTGG
AGAGAAGCTTGAGTGGCAGCGACACGACAAGGCTGACAGCGTTTCAAAGG
AGCTCTTCGGGAATGTGGTGGTCACAGACCTTGAGCTTCAGGGCTCCGGT
GGAGAGAAGCTTGAGTGGCAGCGACACGACAAGGCTGACAGCGTTTCAAA
GGAGCTCTTCGGGAATGTGGTGGTCACAGACCTTGAGCTTCAGGGCTCCG
ACTCCGCGCGAAAGCTGGAGCAGCAGGAGCTCGAGGCAACGTATACGGAC
GCTTGGGCGGTCGGGGGAAGCGAGGAGAGCGATACTCCGCGCGAAAGCTG
GAGCAGCAGGAGCTCGAGGCAACGTATACGGACGCTTGGGCGGTCGGGGG
AAGCGAGGAGAGCGAT
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