mRNA_S-dermatodea_contig12682.1648.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12682.1648.1
Unique NamemRNA_S-dermatodea_contig12682.1648.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12682.1648.1 vs. uniprot
Match: A0A6H5JI31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI31_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 5.330e-9
Identity = 36/58 (62.07%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:   88 HCHATTNDGFATPGDSTSGGYSANVGLILGAVLSFHAVMEGLGLGASSASAAPGIFVA 261
            H H     G  + G +    Y +NVG+IL AVLSFHAVMEGLGLGASS SAAPGIF A
Sbjct:  475 HKHGEGGRGLRSDGGTA---YRSNVGMILAAVLSFHAVMEGLGLGASSESAAPGIFAA 529
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12682.1648.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JI31_9PHAE5.330e-962.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12682contigS-dermatodea_contig12682:3482..4899 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZinc/iron permease
Ec32 orthologEc-28_001780.1
Exons3
Model size262
Cds size261
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12682.1648.1prot_S-dermatodea_contig12682.1648.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12682 3482..4899 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924257.712245-CDS-S-dermatodea_contig12682:3481..35781622924257.712245-CDS-S-dermatodea_contig12682:3481..3578Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12682 3482..3578 -
1694079130.429003-CDS-S-dermatodea_contig12682:3481..35781694079130.429003-CDS-S-dermatodea_contig12682:3481..3578Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12682 3482..3578 -
1622924257.7266061-CDS-S-dermatodea_contig12682:4171..42331622924257.7266061-CDS-S-dermatodea_contig12682:4171..4233Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12682 4172..4233 -
1694079130.4399915-CDS-S-dermatodea_contig12682:4171..42331694079130.4399915-CDS-S-dermatodea_contig12682:4171..4233Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12682 4172..4233 -
1622924257.7372823-CDS-S-dermatodea_contig12682:4797..48991622924257.7372823-CDS-S-dermatodea_contig12682:4797..4899Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12682 4798..4899 -
1694079130.4496522-CDS-S-dermatodea_contig12682:4797..48991694079130.4496522-CDS-S-dermatodea_contig12682:4797..4899Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12682 4798..4899 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12682.1648.1

>prot_S-dermatodea_contig12682.1648.1 ID=prot_S-dermatodea_contig12682.1648.1|Name=mRNA_S-dermatodea_contig12682.1648.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=87bp
PDLLQAEEEEKSGQPSGSVARVLNSSLRLHCHATTNDGFATPGDSTSGGY
SANVGLILGAVLSFHAVMEGLGLGASSASAAPGIFVA
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mRNA from alignment at S-dermatodea_contig12682:3482..4899-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12682.1648.1 ID=mRNA_S-dermatodea_contig12682.1648.1|Name=mRNA_S-dermatodea_contig12682.1648.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1418bp|location=Sequence derived from alignment at S-dermatodea_contig12682:3482..4899- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCAGACCTGCTACAAGCAGAGGAAGAGGAAAAAAGCGGCCAGCCCTCTGG
GTCCGTCGCGCGGGTGCTCAACTCGAGTCTGCGCCTACACTGCCATGCTA
CGGTTAGTACCGGGTATCTGTGTAGACTCGTAGGTATTAATAGCCACGGC
TACGCCCGTGAGGTGGAAATCCGACTCTTTCCAACACTTGGGGCGCTTAA
CACAAACATCAAGTTGTTTGGCCTCAATGTCGTACAGGATTTTAGTGTAC
AAAATCGGCCTAGAAAAAGTCGGCCTCAAACCCGGCATGTCGCTCCGTCC
CGGCATTGTTGGGACGCGTGGTCTGTGCCCGTCTGGATGCGACATGCGTT
TGATATAAGTACCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCTCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNCGCTACTAGAAAA
AGACGGCCCGACACCCGCGCCGCCTCCCCGCCCCCGCTGTGGGGGGCGCG
TGCGGTCGGCCCCTCCTTGCGCCCATGTTGTGTTGTGTAAATACCCCCCC
CCCCCCCCCCCCCCCCCTGTCCCACCCCCACACCCAACCCCTCCCCCCCT
CTCCTCTTGACGACGCCAAATCGGACACACGACGACTCCATGTGGTTCTG
GACTTTGCTTGGGCAGACCAACGACGGCTTCGCGACGCCAGGGGACAGTA
CCTCCGGGGGGTACTCTGCTAACGTTGGGTAAGTGCCAGGGAAATTTCAC
GCGGTCATTTTCAATACTGTGAACAAGTTATTTTATTTCGGGCGGAGGGT
ACAAAATCATACCAGTTTTTTGTGTACGGCACAGCCCACCCGGGTGCTGT
CCTGTCCCGACGAGTTATTGGATTGTTTTATATACACTCTCTGTGTTCTG
TTTTTTTATTTAAAAAACAAAAAACGCCTCAGGTGTGTACAATACCCCTC
GAGGTTGCTTTTTCGTCTTGTCTACTCCGGAGAATTGCTCAAGCTTCGTC
TTTTACTTCTTTGTGAAGCCAGATACTTGTGCTTCAAACGAAGTAGCTGT
GATACAGTTTTATGTGATTGATTTGATTGATTTGTCACACAATACAACCG
ACCGGCCCGCCACTTTGCAATCGCAAAAGTGGATGCTGATCCCGCTATCT
CGTGGTGACGTCACATGAAGGCACAAGAGTGAGAGGAAATCCAGCACCCC
CATCATACACCGAACAAGAAAACGATGTCCAAACATGACCAGAGATACAA
GCCGCACGCCATAAATGAGGAAACAAAAACTGACTCGGCACTCAACACAC
CACGAACCGCGCCCGCGACAGATTGATATTGGGCGCCGTGTTGTCTTTCC
ACGCTGTCATGGAAGGCCTCGGGCTGGGCGCGTCGTCTGCCTCCGCCGCC
CCGGGCATTTTCGTCGCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig12682:3482..4899-

>mRNA_S-dermatodea_contig12682.1648.1 ID=mRNA_S-dermatodea_contig12682.1648.1|Name=mRNA_S-dermatodea_contig12682.1648.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=522bp|location=Sequence derived from alignment at S-dermatodea_contig12682:3482..4899- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCAGACCTGCTACAAGCAGAGGAAGAGGAAAAAAGCGGCCAGCCCTCTGG
GTCCGTCGCGCGGGTGCTCAACTCGAGTCTGCGCCTACACTGCCATGCTA
CGCCAGACCTGCTACAAGCAGAGGAAGAGGAAAAAAGCGGCCAGCCCTCT
GGGTCCGTCGCGCGGGTGCTCAACTCGAGTCTGCGCCTACACTGCCATGC
TACGACCAACGACGGCTTCGCGACGCCAGGGGACAGTACCTCCGGGGGGT
ACTCTGCTAACGTTGGACCAACGACGGCTTCGCGACGCCAGGGGACAGTA
CCTCCGGGGGGTACTCTGCTAACGTTGGATTGATATTGGGCGCCGTGTTG
TCTTTCCACGCTGTCATGGAAGGCCTCGGGCTGGGCGCGTCGTCTGCCTC
CGCCGCCCCGGGCATTTTCGTCGCGATTGATATTGGGCGCCGTGTTGTCT
TTCCACGCTGTCATGGAAGGCCTCGGGCTGGGCGCGTCGTCTGCCTCCGC
CGCCCCGGGCATTTTCGTCGCG
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