mRNA_S-dermatodea_contig12679.1645.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12679.1645.1
Unique NamemRNA_S-dermatodea_contig12679.1645.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig12679.1645.1 vs. uniprot
Match: A0A6H5JPF4_9PHAE (GMP synthase (glutamine-hydrolyzing) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPF4_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 3.950e-38
Identity = 65/67 (97.01%), Postives = 66/67 (98.51%), Query Frame = 1 
Query:    1 VGGLPDTMHLKLIEPLRELFKDEVRSLGMALGMDEFSVWRHPFPGPGLAIRCLAPLSEENLFMAREA 201
            VGGLPDTMHLKLIEPLRELFKDEVR+LGMALGMDEFSVWRHPFPGPGLAIRCLAPLSEENL MAREA
Sbjct:  146 VGGLPDTMHLKLIEPLRELFKDEVRALGMALGMDEFSVWRHPFPGPGLAIRCLAPLSEENLSMAREA 212
[Close]
BLAST of mRNA_S-dermatodea_contig12679.1645.1 vs. uniprot
Match: D7FZ84_ECTSI (GMP synthase (glutamine-hydrolyzing) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ84_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 6.840e-37
Identity = 66/67 (98.51%), Postives = 66/67 (98.51%), Query Frame = 1 
Query:    1 VGGLPDTMHLKLIEPLRELFKDEVRSLGMALGMDEFSVWRHPFPGPGLAIRCLAPLSEENLFMAREA 201
            VGGLPDTMHLKLIEPLRELFKDEVRSLGMALGMDEFSVWRHPFPGPGLAIRCLAPLSEENL MAREA
Sbjct:  270 VGGLPDTMHLKLIEPLRELFKDEVRSLGMALGMDEFSVWRHPFPGPGLAIRCLAPLSEENLSMAREA 336
[Close]
BLAST of mRNA_S-dermatodea_contig12679.1645.1 vs. uniprot
Match: A0A835ZID4_9STRA (GMP synthase (glutamine-hydrolyzing) n=3 Tax=cellular organisms TaxID=131567 RepID=A0A835ZID4_9STRA)

HSP 1 Score: 119 bits (298), Expect = 4.140e-29
Identity = 56/67 (83.58%), Postives = 61/67 (91.04%), Query Frame = 1 
Query:    1 VGGLPDTMHLKLIEPLRELFKDEVRSLGMALGMDEFSVWRHPFPGPGLAIRCLAPLSEENLFMAREA 201
            VGGLP TMHLKLIEPLRELFKDEVR+LG+ALG++EFSVWRHPFPGPGLAIRCL  L+ ENL M REA
Sbjct:  369 VGGLPATMHLKLIEPLRELFKDEVRTLGIALGVEEFSVWRHPFPGPGLAIRCLGELNMENLDMLREA 435
[Close]
BLAST of mRNA_S-dermatodea_contig12679.1645.1 vs. uniprot
Match: A0A7S2BPD2_9STRA (GMP synthase (glutamine-hydrolyzing) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BPD2_9STRA)

HSP 1 Score: 108 bits (269), Expect = 2.020e-27
Identity = 53/67 (79.10%), Postives = 56/67 (83.58%), Query Frame = 1 
Query:    1 VGGLPDTMHLKLIEPLRELFKDEVRSLGMALGMDEFSVWRHPFPGPGLAIRCLAPLSEENLFMAREA 201
            VGGLP TM+LKLIEPLRELFKDEVR LGM LG+ E SVWRHPFPGPGLAIR L  LS+E L M REA
Sbjct:    7 VGGLPATMNLKLIEPLRELFKDEVRELGMVLGVSEESVWRHPFPGPGLAIRVLGELSKERLDMLREA 73
[Close]
BLAST of mRNA_S-dermatodea_contig12679.1645.1 vs. uniprot
Match: A0A418B2P0_9STRA (GMP synthase (glutamine-hydrolyzing) n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418B2P0_9STRA)

HSP 1 Score: 112 bits (280), Expect = 6.520e-27
Identity = 53/67 (79.10%), Postives = 59/67 (88.06%), Query Frame = 1 
Query:    1 VGGLPDTMHLKLIEPLRELFKDEVRSLGMALGMDEFSVWRHPFPGPGLAIRCLAPLSEENLFMAREA 201
            VGGLPDTMHLKLIEPLRELFKDEVR LGMALG+DE SVWRHPFPGPGLAIR L  +++E L + R+A
Sbjct:  272 VGGLPDTMHLKLIEPLRELFKDEVRELGMALGIDEASVWRHPFPGPGLAIRVLGEVTKEALDILRQA 338
[Close]
BLAST of mRNA_S-dermatodea_contig12679.1645.1 vs. uniprot
Match: A0A485LAZ1_9STRA (GMP synthase (glutamine-hydrolyzing) n=14 Tax=Aphanomyces TaxID=100860 RepID=A0A485LAZ1_9STRA)

HSP 1 Score: 112 bits (281), Expect = 9.570e-27
Identity = 53/69 (76.81%), Postives = 60/69 (86.96%), Query Frame = 1 
Query:    1 VGGLPDTMHLKLIEPLRELFKDEVRSLGMALGMDEFSVWRHPFPGPGLAIRCLAPLSEENLFMAREART 207
            VGGLPDTMHLKLIEPLRELFKDEVR LGMALG+DE SVWRHPFPGPGLAIR L  ++++ L + R+A T
Sbjct:  365 VGGLPDTMHLKLIEPLRELFKDEVRELGMALGIDELSVWRHPFPGPGLAIRVLGEVTKDALDILRQADT 433
[Close]
BLAST of mRNA_S-dermatodea_contig12679.1645.1 vs. uniprot
Match: A0A662XY89_9STRA (GMP synthase (glutamine-hydrolyzing) (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XY89_9STRA)

HSP 1 Score: 111 bits (277), Expect = 2.910e-26
Identity = 53/67 (79.10%), Postives = 57/67 (85.07%), Query Frame = 1 
Query:    1 VGGLPDTMHLKLIEPLRELFKDEVRSLGMALGMDEFSVWRHPFPGPGLAIRCLAPLSEENLFMAREA 201
            VGGLPDTMHLKLIEPLRELFKDEVR LGMALG+DE SVWRHPFPGPGLAIR L  ++ E L   R+A
Sbjct:  335 VGGLPDTMHLKLIEPLRELFKDEVRELGMALGIDEESVWRHPFPGPGLAIRVLGDITPEALTTLRQA 401
[Close]
BLAST of mRNA_S-dermatodea_contig12679.1645.1 vs. uniprot
Match: A0A662YGF9_9STRA (GMP synthase (glutamine-hydrolyzing) (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YGF9_9STRA)

HSP 1 Score: 111 bits (277), Expect = 4.810e-26
Identity = 53/67 (79.10%), Postives = 57/67 (85.07%), Query Frame = 1 
Query:    1 VGGLPDTMHLKLIEPLRELFKDEVRSLGMALGMDEFSVWRHPFPGPGLAIRCLAPLSEENLFMAREA 201
            VGGLPDTMHLKLIEPLRELFKDEVR LGMALG+DE SVWRHPFPGPGLAIR L  ++ E L   R+A
Sbjct:  335 VGGLPDTMHLKLIEPLRELFKDEVRELGMALGIDEESVWRHPFPGPGLAIRVLGDITPEALTTLRQA 401
[Close]
BLAST of mRNA_S-dermatodea_contig12679.1645.1 vs. uniprot
Match: T0S6B3_SAPDV (GMP synthase (glutamine-hydrolyzing) n=3 Tax=Saprolegniaceae TaxID=4764 RepID=T0S6B3_SAPDV)

HSP 1 Score: 110 bits (274), Expect = 9.070e-26
Identity = 51/67 (76.12%), Postives = 58/67 (86.57%), Query Frame = 1 
Query:    1 VGGLPDTMHLKLIEPLRELFKDEVRSLGMALGMDEFSVWRHPFPGPGLAIRCLAPLSEENLFMAREA 201
            VGGLPDTMHLKLIEPLRELFKDEVR LGM LG++E SVWRHPFPGPGLAIR L  +++E L + R+A
Sbjct:  367 VGGLPDTMHLKLIEPLRELFKDEVRELGMVLGIEEESVWRHPFPGPGLAIRVLGEVTKEGLDIVRQA 433
[Close]
BLAST of mRNA_S-dermatodea_contig12679.1645.1 vs. uniprot
Match: H3GA45_PHYRM (GMP synthase (glutamine-hydrolyzing) n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GA45_PHYRM)

HSP 1 Score: 109 bits (273), Expect = 1.230e-25
Identity = 53/67 (79.10%), Postives = 56/67 (83.58%), Query Frame = 1 
Query:    1 VGGLPDTMHLKLIEPLRELFKDEVRSLGMALGMDEFSVWRHPFPGPGLAIRCLAPLSEENLFMAREA 201
            VGGLPDTMHLKLIEPLRELFKDEVR LGMALG+DE SVWRHPFPGPGLAIR L  ++ E L   R A
Sbjct:  364 VGGLPDTMHLKLIEPLRELFKDEVRELGMALGIDEPSVWRHPFPGPGLAIRVLGEITPEALETLRHA 430
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12679.1645.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JPF4_9PHAE3.950e-3897.01GMP synthase (glutamine-hydrolyzing) n=1 Tax=Ectoc... [more]
D7FZ84_ECTSI6.840e-3798.51GMP synthase (glutamine-hydrolyzing) n=1 Tax=Ectoc... [more]
A0A835ZID4_9STRA4.140e-2983.58GMP synthase (glutamine-hydrolyzing) n=3 Tax=cellu... [more]
A0A7S2BPD2_9STRA2.020e-2779.10GMP synthase (glutamine-hydrolyzing) n=1 Tax=Flore... [more]
A0A418B2P0_9STRA6.520e-2779.10GMP synthase (glutamine-hydrolyzing) n=1 Tax=Aphan... [more]
A0A485LAZ1_9STRA9.570e-2776.81GMP synthase (glutamine-hydrolyzing) n=14 Tax=Apha... [more]
A0A662XY89_9STRA2.910e-2679.10GMP synthase (glutamine-hydrolyzing) (Fragment) n=... [more]
A0A662YGF9_9STRA4.810e-2679.10GMP synthase (glutamine-hydrolyzing) (Fragment) n=... [more]
T0S6B3_SAPDV9.070e-2676.12GMP synthase (glutamine-hydrolyzing) n=3 Tax=Sapro... [more]
H3GA45_PHYRM1.230e-2579.10GMP synthase (glutamine-hydrolyzing) n=1 Tax=Phyto... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12679contigS-dermatodea_contig12679:1172..6802 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.0
Seed ortholog evalue1.2e-13
Seed eggNOG ortholog2880.D7FZ84
Preferred nameGMPS
KEGG rclassRC00010,RC00204
KEGG koko:K01951,ko:K04257
KEGG ReactionR01230,R01231,R08244
KEGG Pathwayko00230,ko00983,ko01100,ko04740,map00230,map00983,map01100,map04740
KEGG ModuleM00050
GOsGO:0000902,GO:0000904,GO:0001101,GO:0003674,GO:0003824,GO:0003921,GO:0003922,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005700,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006144,GO:0006163,GO:0006164,GO:0006177,GO:0006325,GO:0006464,GO:0006508,GO:0006520,GO:0006541,GO:0006543,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006928,GO:0006935,GO:0006996,GO:0007275,GO:0007399,GO:0007409,GO:0007411,GO:0008047,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009063,GO:0009064,GO:0009065,GO:0009112,GO:0009113,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009605,GO:0009653,GO:0009893,GO:0009987,GO:0010033,GO:0010243,GO:0010604,GO:0010952,GO:0016043,GO:0016054,GO:0016504,GO:0016569,GO:0016570,GO:0016578,GO:0016579,GO:0016874,GO:0016879,GO:0016884,GO:0018130,GO:0019222,GO:0019438,GO:0019538,GO:0019637,GO:0019693,GO:0019752,GO:0019899,GO:0022008,GO:0030030,GO:0030154,GO:0030162,GO:0030182,GO:0030234,GO:0031175,GO:0031323,GO:0031325,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0032991,GO:0034404,GO:0034641,GO:0034654,GO:0035800,GO:0036211,GO:0040011,GO:0042221,GO:0042278,GO:0042330,GO:0042440,GO:0042451,GO:0042455,GO:0042493,GO:0042802,GO:0043085,GO:0043170,GO:0043200,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043412,GO:0043436,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045862,GO:0046037,GO:0046112,GO:0046128,GO:0046129,GO:0046148,GO:0046390,GO:0046395,GO:0046483,GO:0048468,GO:0048518,GO:0048522,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051276,GO:0051336,GO:0051345,GO:0052547,GO:0055086,GO:0060255,GO:0061134,GO:0061564,GO:0065007,GO:0065009,GO:0070646,GO:0070647,GO:0071704,GO:0071840,GO:0072521,GO:0072522,GO:0080090,GO:0090407,GO:0097485,GO:0098772,GO:0120036,GO:0120039,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901367,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901657,GO:1901659,GO:1901698,GO:1901700,GO:2000152,GO:2000158
EggNOG free text desc.GMP synthase (glutamine-hydrolyzing) activity
EggNOG OGsCOG0519@1,KOG1622@2759
EC6.3.5.2
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko04030
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionGMP synthase (glutamine-hydrolyzing)
Ec32 orthologEc-13_002710.1
Exons3
Model size362
Cds size210
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12679.1645.1prot_S-dermatodea_contig12679.1645.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12679 1172..2251 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924257.489008-CDS-S-dermatodea_contig12679:1171..13241622924257.489008-CDS-S-dermatodea_contig12679:1171..1324Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12679 1172..1324 -
1694079130.3057473-CDS-S-dermatodea_contig12679:1171..13241694079130.3057473-CDS-S-dermatodea_contig12679:1171..1324Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12679 1172..1324 -
1622924257.5014682-CDS-S-dermatodea_contig12679:2194..22511622924257.5014682-CDS-S-dermatodea_contig12679:2194..2251Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12679 2195..2251 -
1694079130.3168378-CDS-S-dermatodea_contig12679:2194..22511694079130.3168378-CDS-S-dermatodea_contig12679:2194..2251Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12679 2195..2251 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924257.513231-UTR-S-dermatodea_contig12679:2251..23401622924257.513231-UTR-S-dermatodea_contig12679:2251..2340Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12679 2252..2340 -
1694079130.324179-UTR-S-dermatodea_contig12679:2251..23401694079130.324179-UTR-S-dermatodea_contig12679:2251..2340Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12679 2252..2340 -
1622924257.5232372-UTR-S-dermatodea_contig12679:6739..68021622924257.5232372-UTR-S-dermatodea_contig12679:6739..6802Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12679 6740..6802 -
1694079130.3320878-UTR-S-dermatodea_contig12679:6739..68021694079130.3320878-UTR-S-dermatodea_contig12679:6739..6802Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12679 6740..6802 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12679.1645.1

>prot_S-dermatodea_contig12679.1645.1 ID=prot_S-dermatodea_contig12679.1645.1|Name=mRNA_S-dermatodea_contig12679.1645.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=70bp
MSGAAQRREPLHGEGGEDAADAIMIEELNRANIYRDIGQAFAVLLPVKSV
GVMGDCRYDASYFNPCVIAC
back to top

mRNA from alignment at S-dermatodea_contig12679:1172..6802-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12679.1645.1 ID=mRNA_S-dermatodea_contig12679.1645.1|Name=mRNA_S-dermatodea_contig12679.1645.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5631bp|location=Sequence derived from alignment at S-dermatodea_contig12679:1172..6802- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGGGAGGGCTTCCCGACACGATGCACCTCAAGCTTATCGAGCCCCTCCG
GGAGCTCTTTAAGGTAAATACAACCACGGCGGGGTGTTAATGTCCTCCGC
GAGCCCCAGTCGTGCATCCGACCGTCTCATGACGGAAAACTGGCGGTGTG
TTTTTCTATTGTTATTTTTTATAGGACCGCCCCAAGCCATGTGTGGACTG
TAAATCAATGATCCCTCTGCTATTTCTCGTTGTCCAAGTCAAGTATAGTA
TACCTCGGTGCTTGCTTACTTACGCTCTCGCGCAAAGCTTGAGCGTGTTT
TTGCGATAGTGGCAATCGAACCTCCCTGGGTGATGCGATGCATATTTACA
GGTTTTCCGTTTTCTGTACCTTAAGCGACTCAAGGTACTTCCTCTTAACC
GTCGTCTGCCCAAGAGCGGTGTCGGCAACCGTTGGTGGGCCGCTCGGTTG
AAAGTGTGATGGGCGCTCAATCCAGCACACAATCAAAGGAATCGACTCAA
CCAATCAATCAATTCAGTAACCCTAACCTTGCTTTTATTCCTTGTGTCAT
TGCTCGAATGGATTATAATATCCCAACACTGCGAGACACACAAATACAAA
ATATATAAAATCAAGCTTAGCGTCGTCTGGACTCACAATTCTATATCCCC
TGTCCCTTTATATTCCCTTTTCAACCCTAGGAACAAATGCATACGCCTGC
GTGATGACGTGTGGGAGAGTAAAGGTTTGAACCGCAACCCATGGCATGTC
CTCCTGGCGTCGCAAACGAAAGGACGATTGCTATTCAGTAGCAGCTGGTA
TCATCTCGGTGAGATTCGCAGCCTGGCCGGCGAAACCCGCACACCGCTCC
GTCCCGGTGATGCCTGGCCTATATCCGGTCGGATACGGCATGCGTTAAAC
TGAAGAACCCCTCCTCCCCGAAAGTGTATACATGGCAAAACAAGCAAGCG
ACTTTTTGACTTGCAATATATTGACACTCCTGTTTGGGAAATTCCTTTTT
CCTTCTCCTTCCTTGTTTTTCCAGCTAGTTTTTTAAGCAATTCGGTTTTT
TACACGATGGCTATCTTAACAATTAATGCATGCATATGCATCGCACGCAA
TCACTACGGGCGGCGGCAGGGCGAGGTGCGATCGCGGGTGGGGGAAAACC
ACACAATTCATTTTTATGGTTGCGAGTTTTACAAATATATAAGCTATAAA
AGAACTTACAATCTTCTTTTTGAGATTTTTTTGAACTTAAGAATTTTCCC
TTCGTCCAAGCTGTACGTTGCTTGCTGGGTTGTGGTGCGTTGAGCGTACG
TGTTGGGTGTTTTCTTCTTCGTTTTGTCCTCCTATAGAAAGCGGTGTGAC
TTGGGTTCGAGAGGTTCGAAGCCAGCGAGGAGAGGAGTAACCTGCGGATC
GACGCGTATACCTACTGCTAGCACTGCTGTCCGGCGGGTCTCAAATGCGC
CGCCGGTACATCTAATGCGCCCCCGGTACAAGGGATGTTCTACCAGCTAT
ACATCTGTTGATGATACGAGATAGTTTAAAACCCATATGACAGTTTCGGG
TGAGTTGAAGCAAACCTGCTGGGATTCAGGTCGATGCTACAAGGCGCTTC
GAACCACTGCCACGTTGGCACGCACTTCAAGTAGTTCACGCCTAAACACG
CTGCCGTCGAAGAGTGGTCTCCGTTATATCCCTGTTTCGCATGGTTGGAG
GTGTGGCTCGGGCTGTGGTGTGTGCTGTGGCTGAGGGTATCATGTGAATT
CGCGTGAATTTTTCAATTTTCTCGCGTGAATGAATCCCCGCGTTCCCCCC
GCTTAATATTTCAGATTTATTTTCACGTCGAGTTTTTCATCCCGCATGGT
ATTCCATGCCTGCTTTAACTTCGTAGGTCGACCTCAACCGTGGCTGGCGA
GACGACACTAGGTGCGTTGAACACATCTCTTCAATAGATGGGAACGTAGC
GCAGCTCGTCCTGTGTGTTCCGTGCCAATATCCTCATTCAGGAATGATTT
ACAGAAAATGTAAATGATACAAGATATCCTCGCAGAGACAGAGCCACCCC
ATGCGGATGGATGCGGGCTCCGGTACTGCTAGCACTGGTCTCGATAATCG
ATACATACCTAAGTAGCGCAGCTGATTGTATTGTGCTGCACATCAGTGGG
TGTCCACGTTCAGGGAGACTTTTTGCTTCAAAATGCATGGAAAAAATGTA
AACGTACATACATATGGGTCTTCTCTCCACAAACGTAGCGTCTGGTGACC
CATCCCGCCTTAGCCCCCCTCCCCTCCTGCTCCCTCCCCCCAAAAAAAAG
AAAAGCACGAGGAAAATACAATGTTTTGTCATATTTGTATTTCATTTTAG
AACACACAAGACGACCGAATGATCGAAGGCGTATACACACCCACGCATAG
TTACGGCGGGCGGCGCCAGGAGCTCAAACGTTTCGTGAACCCGCTTCCCC
TGTTAAGCTGAGACCAACAAACTCCCTCCATTTGAGGTTCGAGGTGGGGT
TTGTCGAGGTAGACTTGACTCTTGTGGCATGGAGCTGTAAAACTGCTATT
TTTAGGGCATCGGGGAGTTCATGCAGTGTCGTGTGAGCCCAAGATACCTT
GGTCAAAGGGTGCTTTCTCTCCCAAAGTGATGAAACTCATCACGTGGTAT
AGGATGCCTGTTGAACTATGGATTGTTGGAACGCCCAACAGCATCCATTG
GCTTCTGGTTGGTACTCCGCCAGGAGTGCTCATGAGCAGATCATACTATG
AGCGTATCACACGTATACCGTTGTTGCGTGCGTACAGCGCTTTTGCCTTC
GAACGCCTATTGGATGTGTACCTTTGGTTGTGCGGTATATCCAATCAACC
CATGGCATATTGGTTGGCGTCGCAAACGCAAGGATGGTGGCTAGCACCTG
GTGTCATCCTTGTGAAACGCAGCCTAGCCAGCGGAAACCCGGCATATCGG
TCCGTCCCGGCATTGTTGGGACGCGTGGTCTATGTCCGTTGGATACGATA
CGGGTTTAACTAGCGATTCTGTTAGTAGGGGTGTGAAAATAAATATAATA
AAAGAGAGAAATTCTAAGCGTTTGTTGGTGCAACCCCCCTGAAATGGGGA
CTGTGACTGCTGCCACCCGATGGATGCACACACTACAGGGCTACCTGGCT
GTTACAATTTAATGTTGTGTGGATATGTTGTATTCGTATTTTTTCTCTCT
GGCAACTCGCAAGACGAAGCTCGGTAAATCGCGCGACGATTTACCACGGA
CGAGAGCAATGCAAGTAAACCGGTGGTGTGTCTCTGGTGGCGTTGTAGTT
CTCGGCTTAGCATCATAATACCATACTTGTACTACAAGTATAATTGTAAT
TTCATCATACATACATACTACGTGCTGTGCTTCTGCTGTATGTTGCATGC
ATTGCTGGGCGCTGCTTGCTGTTTGTTGTATAGTTGCATAGTAGCCACGA
CCACAAAGAGCACGTGCGTTCGTCCCGCGAGTCGCCCAGCTCACTCTTTC
ATGCTCTGGGATGTGACCCCCCTGCCTTTTCCTAGTGGTGTTAGCCGCTC
TCGGATCGGCTACTGGCCTAGTACTACATGTATGTAGTGCGTCGCGCATA
CGTACATACATACGTACAAGTGTTCGAAGTTGAGCATAATAACGCAGTAC
GCCAATTACAGGAGGCCTTAAACGAACGGCGGCGCAATTTACACGAAAAG
TTCGGTAAAATTCGACCGATTTCGGCCGATTTCGACGATGAAGAAAGGCC
TAAATGTAAACGGGCGGGTCAACCTCCAGAGAAAATTCCCTCTCCCATTT
ACATCTCCCAACCCCCATCCCCGAATGTAAAAAAAGGATCCAAGTATAAA
AAAACTAGCCTTGTGTCCAATGCTTTTTGGGATGGCTGTTTTGTTCGTTT
ATTAAAATCATACCTATGTATGTCCCGTCTGATCCCGAGCGTTTGTTTGT
GTCTATTCTTTTTGCGTACAGATAATTCCGTGAGGTTTTTCGATATCTCG
ATTTGTCAAGTTACCACGAGTTGGATCGGCAACCATTGGCGGACGGGTCG
GTTGTAAGCGTGCCAATCGAATACAAGCAATAAATGCAACTCACAAAATA
ACTACGGGCGGCGGCAGGCTGAGGCGCGATCGCGGGGGTAAAATGGAGAG
ACGTGCCCCCGAAAGAACACTCCACGATGCACAGAAACTCTTGTTTCGGT
CCCGGCTTTCAAGGTTTTATACATAGTTGCGTTCCCCTCGCTGTACGTGA
CTCCTTATCTTTTGCTTTGTCGCACGAATGCATCTGATGACGCGCCCCTA
AACCCCAAAATATAACAAAACGAAAAAAAACAAAAGCTAGCATCGTCTCG
ACTTGAAATCTTCACGGTTTCCTTCGTGTTTTTTTTTCTTCTTTTTTCAT
CGCAAAAAAACGGGTGAATGAATAAATGCATACGCTTATACGCATGCAAT
GGGCGGCGGCAGGACGAGGTGCGATCGCTGGGGATGGCGCTCGGTATGGA
CGAGTTCAGCGTCTGGAGACACCCCTTCCCTGGGCCGGGCCTCGCCATCC
GATGTCTGGCGCCGCTCAGCGAAGAGAACCTCTTCATGGCGAGGGAGGCG
AGGACGCCGTGACTGTGGTGGTGTGATCGGATCGAATATTGCGGCATGGG
GTGTTTTGTGGTTGAATGTGATGGGATTTGGGTGTTGTGTGATCCAATCA
TATCGGATGGGATGGGACGGGATTAATTGCACGCCCCCATATCACGGAGG
GCGTGGAAGTCTAGATGGTGGTGGGTGCGTGATCGGGTGCAATCGTGATC
AAATAACTCCTCCTTGATCCTCACCGCACCGGATCCTTGTTTTTCTAATC
GTCTTTTGTGTTTTGTTTACTAATTTTTTGCTGTACATTGATACTCGCCC
CCCCGGGGCAAAAACGCAGGGTTGGGTTTGTCTGTTTTGGCATGGAGCTT
TAACGCTGCGAGGTATAGGGCATGAGGTGGTTCATGCGGTATGTCCTGTG
AGCTCAGAGACCTCGGTCAAAGAGTCTTGTCTTTCCCTAAAGGGGTGAAG
CGCATCACATCTTATAGGGACCCCTGCCGACCATCAGATTATCGGAACTC
CCTAGAGCAATCATTGGCTTATGAGTGGTACTCCGCCTGAGTACTCATGA
ACAGACTGAAGTCCCGAGTGTATCATACATCTACCATCGTATGTTGGATA
CGTGCGGAGATCGAAGTCCCTTTGCGGTACTTGGAGTAATGCCATCCGTA
TTAGATGTGCAACATTTGGTTGCACGGCGTGTCCAATCAACCCATGGCAT
ATCGGCTGGCCTCGTTAACGGGATGATCATGGCTAGTAGCTTGTGTGATC
CTTGTGAAATGCAGCCTTGGCGGCGAAAATCCGGTGCATCGCTCCGTCCA
GGCGTTGTTTGGACGCGTGGGACGGCATGCGTTTAACGTAAACCCCCCCC
CCCCCCCCTCCCCGGTCAAAACGAGCAGGCGGACGCGATCATGATAGAGG
AGCTCAACCGAGCGAACATCTACCGTGATATCGGTCAAGCCTTCGCGGTG
CTTCTTCCGGTGAAGAGCGTGGGCGTGATGGGGGATTGCAGGTATGATGC
ATCATATTTCAATCCCTGTGTGATTGCATGT
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig12679:1172..6802-

>mRNA_S-dermatodea_contig12679.1645.1 ID=mRNA_S-dermatodea_contig12679.1645.1|Name=mRNA_S-dermatodea_contig12679.1645.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at S-dermatodea_contig12679:1172..6802- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTCTGGCGCCGCTCAGCGAAGAGAACCTCTTCATGGCGAGGGAGGCGA
GGACGCCATGTCTGGCGCCGCTCAGCGAAGAGAACCTCTTCATGGCGAGG
GAGGCGAGGACGCCGCGGACGCGATCATGATAGAGGAGCTCAACCGAGCG
AACATCTACCGTGATATCGGTCAAGCCTTCGCGGTGCTTCTTCCGGTGAA
GAGCGTGGGCGTGATGGGGGATTGCAGGTATGATGCATCATATTTCAATC
CCTGTGTGATTGCATGTGCGGACGCGATCATGATAGAGGAGCTCAACCGA
GCGAACATCTACCGTGATATCGGTCAAGCCTTCGCGGTGCTTCTTCCGGT
GAAGAGCGTGGGCGTGATGGGGGATTGCAGGTATGATGCATCATATTTCA
ATCCCTGTGTGATTGCATGT
back to top