mRNA_S-dermatodea_contig12676.1643.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12676.1643.1
Unique NamemRNA_S-dermatodea_contig12676.1643.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12676.1643.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12676contigS-dermatodea_contig12676:3049..3465 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size419
Cds size417
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924257.3756351-CDS-S-dermatodea_contig12676:3048..34651622924257.3756351-CDS-S-dermatodea_contig12676:3048..3465Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12676 3049..3465 +
1694079130.1887832-CDS-S-dermatodea_contig12676:3048..34651694079130.1887832-CDS-S-dermatodea_contig12676:3048..3465Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12676 3049..3465 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12676.1643.1prot_S-dermatodea_contig12676.1643.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12676 3049..3465 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12676.1643.1

>prot_S-dermatodea_contig12676.1643.1 ID=prot_S-dermatodea_contig12676.1643.1|Name=mRNA_S-dermatodea_contig12676.1643.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=139bp
GHGPYRGLYPAFLFGRGRLFRGYHRRGRGGSCGGGVVALLLRFRFRFRGR
FRLHLGGLRSRDLASLIVSLLLRRPLGSRRLFLFLLLLLLFLLLLPLLLL
LLSRGLLLSLPSLSLGRLPLLRGLRRPRHLGHSPLLSPL
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mRNA from alignment at S-dermatodea_contig12676:3049..3465+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12676.1643.1 ID=mRNA_S-dermatodea_contig12676.1643.1|Name=mRNA_S-dermatodea_contig12676.1643.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=417bp|location=Sequence derived from alignment at S-dermatodea_contig12676:3049..3465+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCCACGGCCCCTACCGGGGCCTCTACCCTGCTTTTCTTTTCGGGCGTGG
ACGCCTTTTTCGGGGATATCACCGCCGCGGAAGAGGAGGTTCCTGCGGAG
GGGGCGTTGTTGCCTTGCTCCTCCGCTTTCGCTTTCGCTTTCGCGGGCGC
TTTCGCCTTCACCTTGGTGGCCTGCGCTCGCGCGACCTCGCGAGTCTGAT
TGTCTCGCTTCTGCTTCGCCGCCCTCTCGGCTCGCGCCGCCTGTTCTTGT
TCCTGCTTCTTCTTCTTCTTTTCCTCCTCCTCCTCCCCCTCCTGCTGCTG
CTGCTTAGCCGCGGCCTCCTCCTTAGCCTTCCTAGTCTTAGCCTCGGCCG
CCTCCCTCTCCTTCGCGGCCTCCGTCGCCCGCGCCATCTCGGCCATTCGC
CGCTGCTGTCGCCGCTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig12676:3049..3465+

>mRNA_S-dermatodea_contig12676.1643.1 ID=mRNA_S-dermatodea_contig12676.1643.1|Name=mRNA_S-dermatodea_contig12676.1643.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=834bp|location=Sequence derived from alignment at S-dermatodea_contig12676:3049..3465+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCCACGGCCCCTACCGGGGCCTCTACCCTGCTTTTCTTTTCGGGCGTGG
ACGCCTTTTTCGGGGATATCACCGCCGCGGAAGAGGAGGTTCCTGCGGAG
GGGGCGTTGTTGCCTTGCTCCTCCGCTTTCGCTTTCGCTTTCGCGGGCGC
TTTCGCCTTCACCTTGGTGGCCTGCGCTCGCGCGACCTCGCGAGTCTGAT
TGTCTCGCTTCTGCTTCGCCGCCCTCTCGGCTCGCGCCGCCTGTTCTTGT
TCCTGCTTCTTCTTCTTCTTTTCCTCCTCCTCCTCCCCCTCCTGCTGCTG
CTGCTTAGCCGCGGCCTCCTCCTTAGCCTTCCTAGTCTTAGCCTCGGCCG
CCTCCCTCTCCTTCGCGGCCTCCGTCGCCCGCGCCATCTCGGCCATTCGC
CGCTGCTGTCGCCGCTGGGCCACGGCCCCTACCGGGGCCTCTACCCTGCT
TTTCTTTTCGGGCGTGGACGCCTTTTTCGGGGATATCACCGCCGCGGAAG
AGGAGGTTCCTGCGGAGGGGGCGTTGTTGCCTTGCTCCTCCGCTTTCGCT
TTCGCTTTCGCGGGCGCTTTCGCCTTCACCTTGGTGGCCTGCGCTCGCGC
GACCTCGCGAGTCTGATTGTCTCGCTTCTGCTTCGCCGCCCTCTCGGCTC
GCGCCGCCTGTTCTTGTTCCTGCTTCTTCTTCTTCTTTTCCTCCTCCTCC
TCCCCCTCCTGCTGCTGCTGCTTAGCCGCGGCCTCCTCCTTAGCCTTCCT
AGTCTTAGCCTCGGCCGCCTCCCTCTCCTTCGCGGCCTCCGTCGCCCGCG
CCATCTCGGCCATTCGCCGCTGCTGTCGCCGCTG
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