mRNA_S-dermatodea_contig12671.1642.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12671.1642.1
Unique NamemRNA_S-dermatodea_contig12671.1642.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12671.1642.1 vs. uniprot
Match: D8LGK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGK2_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 1.740e-22
Identity = 44/60 (73.33%), Postives = 53/60 (88.33%), Query Frame = 1 
Query:  145 PRTPVPSASGTRRPKGAGGRPLEGDLADALEHCRFAIRALEYKDVDLAVQRLHDALQQLT 324
            PRTPVPSA+G RR    GGR +EG++ADA+EHC+FA+RALE KDVDLAVQ+LH+ALQQLT
Sbjct:   84 PRTPVPSAAGPRRSGSGGGRAMEGNMADAMEHCKFALRALEKKDVDLAVQKLHEALQQLT 143
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BLAST of mRNA_S-dermatodea_contig12671.1642.1 vs. uniprot
Match: D8LGK1_ECTSI (Vta1_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGK1_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 5.780e-12
Identity = 29/43 (67.44%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:  196 GGRPLEGDLADALEHCRFAIRALEYKDVDLAVQRLHDALQQLT 324
            G R +EG LADA+EHCRFAIRALE++D D A Q+L +ALQ+LT
Sbjct:   29 GSRAMEGKLADAMEHCRFAIRALEFRDADSAAQKLREALQKLT 71
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BLAST of mRNA_S-dermatodea_contig12671.1642.1 vs. uniprot
Match: A0A7S1ZCU8_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZCU8_TRICV)

HSP 1 Score: 69.3 bits (168), Expect = 1.430e-11
Identity = 35/72 (48.61%), Postives = 46/72 (63.89%), Query Frame = 3 
Query:    3 FFDVLRQF---------GPPDEETDRRRIYCKWKASQILKAIKEGRTPTPGGAGEDTEDAGAFRVGDEAAEG 191
            FF++L+QF             +E D +R+YCKWKA++ILKAI+EGR PTPGG GE  ED    R  ++A EG
Sbjct:  119 FFEILQQFYDVKDEELKSDEQKEEDEKRVYCKWKATEILKAIREGRKPTPGGFGETEEDGATGR--EDAGEG 188
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BLAST of mRNA_S-dermatodea_contig12671.1642.1 vs. uniprot
Match: A0A397D5Y7_9STRA (Vta1 domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397D5Y7_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.570e-11
Identity = 29/46 (63.04%), Postives = 35/46 (76.09%), Query Frame = 3 
Query:    3 FFDVLRQFGPPDEETDRRRIYCKWKASQILKAIKEGRTPTPGGAGE 140
            FFD+L+QFGPP E+   +  Y K+KA+ ILKAIKEGRTPTPG   E
Sbjct:  122 FFDILKQFGPPSEDVLEKTKYSKFKAADILKAIKEGRTPTPGAPSE 167
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BLAST of mRNA_S-dermatodea_contig12671.1642.1 vs. uniprot
Match: W4FW13_9STRA (Vta1 domain-containing protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FW13_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 8.540e-11
Identity = 29/46 (63.04%), Postives = 35/46 (76.09%), Query Frame = 3 
Query:    3 FFDVLRQFGPPDEETDRRRIYCKWKASQILKAIKEGRTPTPGGAGE 140
            FFD+L+QFGPP E+   +  Y K+KA+ ILKAIKEGRTPTPG   E
Sbjct:  122 FFDILKQFGPPSEDVLEKTKYSKFKAADILKAIKEGRTPTPGAPSE 167
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BLAST of mRNA_S-dermatodea_contig12671.1642.1 vs. uniprot
Match: A0A3R6W3I3_9STRA (Vta1 domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6W3I3_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 8.770e-11
Identity = 28/49 (57.14%), Postives = 35/49 (71.43%), Query Frame = 3 
Query:    3 FFDVLRQFGPPDEETDRRRIYCKWKASQILKAIKEGRTPTPGGAGEDTE 149
            FFD+L+QFG P E+   +  Y K+KA+ ILKAIKEGRTPTPG   E  +
Sbjct:   80 FFDILKQFGTPSEDVLEKTKYSKFKAADILKAIKEGRTPTPGAPSEQVQ 128
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BLAST of mRNA_S-dermatodea_contig12671.1642.1 vs. uniprot
Match: A0A8J5JH99_9STRA (Vta1 domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5JH99_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 2.580e-10
Identity = 27/42 (64.29%), Postives = 33/42 (78.57%), Query Frame = 3 
Query:    3 FFDVLRQFGPPDEETDRRRIYCKWKASQILKAIKEGRTPTPG 128
            FFD+L QFG   E+   +R YCK+KA+ ILKAIKEG+TPTPG
Sbjct:  124 FFDILSQFGDISEDVAEKRRYCKYKAATILKAIKEGKTPTPG 165
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BLAST of mRNA_S-dermatodea_contig12671.1642.1 vs. uniprot
Match: A0A7S4AWR7_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AWR7_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 4.270e-10
Identity = 29/53 (54.72%), Postives = 38/53 (71.70%), Query Frame = 3 
Query:    3 FFDVLRQF------GPPDEETDRRRIYCKWKASQILKAIKEGRTPTPGGAGED 143
            FF++L+QF           E  ++ +YCKWKA++ILKAIKEGRTPTPGG GE+
Sbjct:  119 FFEILQQFYXXXXXXXXXAEQKKKAVYCKWKATEILKAIKEGRTPTPGGYGEE 171
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BLAST of mRNA_S-dermatodea_contig12671.1642.1 vs. uniprot
Match: A0A0W8AZU1_PHYNI (Vacuolar protein sorting-associated protein VTA1 n=3 Tax=Phytophthora TaxID=4783 RepID=A0A0W8AZU1_PHYNI)

HSP 1 Score: 63.9 bits (154), Expect = 7.570e-10
Identity = 27/42 (64.29%), Postives = 33/42 (78.57%), Query Frame = 3 
Query:    3 FFDVLRQFGPPDEETDRRRIYCKWKASQILKAIKEGRTPTPG 128
            FFD+L QFG   E+   +R YCK+KA+ ILKAIKEG+TPTPG
Sbjct:  126 FFDILNQFGDISEDVVEKRRYCKYKAATILKAIKEGKTPTPG 167
[Close]
BLAST of mRNA_S-dermatodea_contig12671.1642.1 vs. uniprot
Match: A0A1V9ZIF3_9STRA (Vacuolar protein sorting-associated protein VTA1 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZIF3_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 7.860e-10
Identity = 28/46 (60.87%), Postives = 34/46 (73.91%), Query Frame = 3 
Query:    3 FFDVLRQFGPPDEETDRRRIYCKWKASQILKAIKEGRTPTPGGAGE 140
            FFD+L+QFG P E+T  +  Y K+KA+ ILKAIKEGRTP PG   E
Sbjct:  122 FFDILKQFGQPSEDTIEKTKYSKYKAADILKAIKEGRTPMPGAPSE 167
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12671.1642.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGK2_ECTSI1.740e-2273.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LGK1_ECTSI5.780e-1267.44Vta1_C domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A7S1ZCU8_TRICV1.430e-1148.61Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A397D5Y7_9STRA1.570e-1163.04Vta1 domain-containing protein n=2 Tax=Aphanomyces... [more]
W4FW13_9STRA8.540e-1163.04Vta1 domain-containing protein n=3 Tax=Aphanomyces... [more]
A0A3R6W3I3_9STRA8.770e-1157.14Vta1 domain-containing protein n=1 Tax=Aphanomyces... [more]
A0A8J5JH99_9STRA2.580e-1064.29Vta1 domain-containing protein n=1 Tax=Phytophthor... [more]
A0A7S4AWR7_9STRA4.270e-1054.72Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A0W8AZU1_PHYNI7.570e-1064.29Vacuolar protein sorting-associated protein VTA1 n... [more]
A0A1V9ZIF3_9STRA7.860e-1060.87Vacuolar protein sorting-associated protein VTA1 n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12671contigS-dermatodea_contig12671:636..3102 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-10_001720.1
Exons2
Model size327
Cds size327
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924257.326377-CDS-S-dermatodea_contig12671:635..8191622924257.326377-CDS-S-dermatodea_contig12671:635..819Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12671 636..819 -
1694079130.1726122-CDS-S-dermatodea_contig12671:635..8191694079130.1726122-CDS-S-dermatodea_contig12671:635..819Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12671 636..819 -
1622924257.3395584-CDS-S-dermatodea_contig12671:2959..31021622924257.3395584-CDS-S-dermatodea_contig12671:2959..3102Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12671 2960..3102 -
1694079130.1807728-CDS-S-dermatodea_contig12671:2959..31021694079130.1807728-CDS-S-dermatodea_contig12671:2959..3102Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12671 2960..3102 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12671.1642.1prot_S-dermatodea_contig12671.1642.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12671 636..3102 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12671.1642.1

>prot_S-dermatodea_contig12671.1642.1 ID=prot_S-dermatodea_contig12671.1642.1|Name=mRNA_S-dermatodea_contig12671.1642.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=109bp
CSSTSCDSSDRQTKRPTAAASTASGRLLRSLRRSRKDGRPPPVGLEKTPR
TPVPSASGTRRPKGAGGRPLEGDLADALEHCRFAIRALEYKDVDLAVQRL
HDALQQLT*
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mRNA from alignment at S-dermatodea_contig12671:636..3102-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12671.1642.1 ID=mRNA_S-dermatodea_contig12671.1642.1|Name=mRNA_S-dermatodea_contig12671.1642.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2467bp|location=Sequence derived from alignment at S-dermatodea_contig12671:636..3102- (Saccorhiza dermatodea SderLu1190fm monoicous)
TGTTCTTCGACGTCCTGCGACAGTTCGGACCGCCAGACGAAGAGACCGAC
CGCCGCCGCATCTACTGCAAGTGGAAGGCTTCTCAGATCCTTAAGGCGAT
CAAGGAAGGACGGACGCCCACCCCCGGTGGGGCTGGAGAAGACGTGAGCA
GATTTGAAGCCCTGTCGGGTGTCGGGGGGGGGGGGTGTACTCATTGATCG
TGCATGCCGTAGTCGTTAGACCATAGACCTCGGGGCGGGGGGGGGGGGGA
GTTGGCTTGTACCATAACCATCTATTAATAACATAATATATGACCATGGA
ATCATAACATCATACGCAACAAGCGGGCCTCCGTAGGTGTGTTTAACAGC
TTGGATCGCCTTCCCTTTTGAAAGGGTGGGACAGTACCCCCAACGCTCGC
TCTGTATTTTTGAAATCGTTGCAGGAGAGGAGGGGTGGGTGTACTTGGGT
GGGAAACGCTTTGGTTTGTGTCCAGAGGGGCATATAAGACCACGCATGCG
TCCCAACAGTGCCGGGACAGAGCGATTTAATCCGGAATTTGGAATTTGGA
ATTTTCGGTTCGCCGACCGGGCTGTGTTTCACAAGGATGACTTGACACAG
ACGAGCTTCCAGCCAGGCAGCCAGCATCCTTGTGTTTACGTGGCCCGATA
TGCCATGGGTTTGATTGGGCATATACTGGGCAACCAAGTGTGGCACATTC
ATTCGCTAGGCGTGACTATACTCCCAAGTGTATCGCAAAGGGGGGGGGGG
GAGATGCACTTATTACGCTGAGTGCATGTCGTATCCAAACGGACAATGTT
GGCCACACATCCCAACCATGCCGGGACGGAGCTGTGCGCCGGATTTTCGC
CGGCCAGGTTGTGCTCTTCACAAGGATTATACTATACCAGCTGCTTGTCG
TTACCCTTGACGGTTCGACAACAAACTGGTGGGGCTTGGGGGGGTAGTGG
TTTTTACTGTAGAATTCAGGTGTGCATGTGTGTGTGTGTTTTTTTTTTTG
CGCCCACAGGCCCGTGTTTACTCTAATATTAATAGGGCGTACTACTGTTG
ATGTATCTCCAGGTCGTGTTTTTGTGAAAATACCAAAACCGATAATATAT
TATGTTGGGTATGGAGAGTAAACACAGTGTTCATTTTTATTTTTAGAGGG
AAGACAAGCAAGGCATCGAGAAGAAAAAAAAGAAAAAAAAACTCGTCAAC
AAAAACGGTACACACAGCCATTCTGTCTGTACACACAAATAACGAGAAAA
TGGGGAAAAAATAACGGTATGATTTTACCACAGGAAGTCACCTCGCTTTC
CCCCCTCCCCCCGCTCTTCTTTCTTTCTCACCCCTGCAACGACCTCCTCT
TCCGCTTACCTTTCCATCAAGTATACTATTAACATTATAGTAGGTACAGT
AGCCACGGCTACGCCCATGAGGTGTGCGTTTTCTCTAAAATCAAGTATTA
AGAGTGGCTTCACAGTTTGGTATCAGAAACCGTACAAGTATAGGGTTTGG
GCCTACTAATTTTTCCTCAACTTAAAATCGCTATTACTAAGAAAAAAAAA
CACTAAAAACGTTATTAATGAAAGAAGATGAAGATATACATCGCCACCAA
ACACATCTACAACCTCGACAAAACCCCACTCGCCCTCCCCTCGGTTCGCA
TTCGCATCCGCGTTCTGGCGGTCCCCGCGCGTCTTGGCCTCGCCAGGTGG
ACACGGGCATGCCTTCGGCGGGCGGCCCCGGCGGCGCAGGCTACAACGCA
CCAGACAGCGGCGAACAAGCGGCGGTAGCAGCAGCAGCAGCAGCAGCAGC
AGCGGCAGCGGCGGCCGCCAGTGCGACGGCAGAGTCCAATAGACACGACC
CCCTCGCCGGGATCATCCCCGAAGCTCCCACGAACTTCCCTTACAACGCG
CCCGGCTTCTCCCCGCCAGCAGACGCCGCCGGCATCGGCGGCCTCGGCGG
GCCCTCGATCCCGTCCTACCCTCCGCAGAGCTCCGACACCTCCTACGATG
CCCCTTGCGCACCCGCACCGGAAGACTCCATGTATTATCCGCCGGGGGGC
GGGGGTGGCGGCGGCGGCGGCGGCGCAGCCCCTCTCGGGTTGATCGGTGT
ACCGCCGCACGCTATAGGTGACCCGGGACCGGGTTCTTCAGTAACCCCGA
CAACGATGCCTTACGTAGCCCCCTCTGCTGTAGTGCCATCCCCGTACGCG
CCACCGGCTGCGCCTGCTGCGCCACCGGCGCAACCGCGGTACGCTCCTAC
CCCGGCTCCGGCTGTGGCTCCCGCCCCCGTGAGACCGAGGACGCCGGTGC
CTTCCGCGTCGGGGACGAGGCGGCCGAAGGGTGCGGGGGGCAGGCCGTTG
GAGGGGGACCTGGCCGACGCGCTGGAGCACTGCCGGTTCGCGATTCGGGC
GCTAGAGTACAAGGACGTGGACCTGGCGGTACAGAGGCTGCACGATGCTT
TGCAGCAATTAACATAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig12671:636..3102-

>mRNA_S-dermatodea_contig12671.1642.1 ID=mRNA_S-dermatodea_contig12671.1642.1|Name=mRNA_S-dermatodea_contig12671.1642.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at S-dermatodea_contig12671:636..3102- (Saccorhiza dermatodea SderLu1190fm monoicous)
TGTTCTTCGACGTCCTGCGACAGTTCGGACCGCCAGACGAAGAGACCGAC
CGCCGCCGCATCTACTGCAAGTGGAAGGCTTCTCAGATCCTTAAGGCGAT
CAAGGAAGGACGGACGCCCACCCCCGGTGGGGCTGGAGAAGACTGTTCTT
CGACGTCCTGCGACAGTTCGGACCGCCAGACGAAGAGACCGACCGCCGCC
GCATCTACTGCAAGTGGAAGGCTTCTCAGATCCTTAAGGCGATCAAGGAA
GGACGGACGCCCACCCCCGGTGGGGCTGGAGAAGACACCGAGGACGCCGG
TGCCTTCCGCGTCGGGGACGAGGCGGCCGAAGGGTGCGGGGGGCAGGCCG
TTGGAGGGGGACCTGGCCGACGCGCTGGAGCACTGCCGGTTCGCGATTCG
GGCGCTAGAGTACAAGGACGTGGACCTGGCGGTACAGAGGCTGCACGATG
CTTTGCAGCAATTAACATAAACCGAGGACGCCGGTGCCTTCCGCGTCGGG
GACGAGGCGGCCGAAGGGTGCGGGGGGCAGGCCGTTGGAGGGGGACCTGG
CCGACGCGCTGGAGCACTGCCGGTTCGCGATTCGGGCGCTAGAGTACAAG
GACGTGGACCTGGCGGTACAGAGGCTGCACGATGCTTTGCAGCAATTAAC
ATAA
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