mRNA_S-dermatodea_contig12666.1641.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12666.1641.1
Unique NamemRNA_S-dermatodea_contig12666.1641.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12666.1641.1 vs. uniprot
Match: A0A6H5JRN1_9PHAE (CYTOSOL_AP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JRN1_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 4.270e-32
Identity = 59/63 (93.65%), Postives = 60/63 (95.24%), Query Frame = 1 
Query:    1 IADLKNVGARPGSSITAALFLKEFVEKTPWAHLDIAGPVWNDNMGGATGYGVRLLTRWVQKQG 189
            IADLKNVGARPGSSITAALFLKEFVEKTPWAHLDIAGPVW D  GGATGYGVRLLTRWVQK+G
Sbjct:  564 IADLKNVGARPGSSITAALFLKEFVEKTPWAHLDIAGPVWKDEAGGATGYGVRLLTRWVQKKG 626
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BLAST of mRNA_S-dermatodea_contig12666.1641.1 vs. uniprot
Match: A0A7S2GA21_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2GA21_9STRA)

HSP 1 Score: 107 bits (267), Expect = 6.470e-29
Identity = 49/64 (76.56%), Postives = 55/64 (85.94%), Query Frame = 1 
Query:    1 IADLKNVGARPGSSITAALFLKEFVEKTPWAHLDIAGPVWNDNMGGATGYGVRLLTRWVQKQGA 192
            IADLKNVG R G +ITAALFLKEFV KTPWAH+DIAGPVW+D  GGATG+GV+LL  WV+ QGA
Sbjct:   36 IADLKNVGPRTGGAITAALFLKEFVTKTPWAHVDIAGPVWDDKKGGATGFGVKLLVDWVESQGA 99
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BLAST of mRNA_S-dermatodea_contig12666.1641.1 vs. uniprot
Match: A0A7S2RIM1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RIM1_9STRA)

HSP 1 Score: 113 bits (282), Expect = 9.730e-28
Identity = 52/64 (81.25%), Postives = 56/64 (87.50%), Query Frame = 1 
Query:    1 IADLKNVGARPGSSITAALFLKEFVEKTPWAHLDIAGPVWNDNMGGATGYGVRLLTRWVQKQGA 192
            +ADLKNVG R   SITAALFLKEFVEKTPWAH+DIAGPVW+D  GGATGYGVRLL  WV+KQGA
Sbjct:  524 LADLKNVGGRAAGSITAALFLKEFVEKTPWAHIDIAGPVWDDKAGGATGYGVRLLVDWVEKQGA 587
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BLAST of mRNA_S-dermatodea_contig12666.1641.1 vs. uniprot
Match: A0A7S2UVZ7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVZ7_9STRA)

HSP 1 Score: 108 bits (271), Expect = 3.090e-26
Identity = 49/62 (79.03%), Postives = 55/62 (88.71%), Query Frame = 1 
Query:    1 IADLKNVGARPGSSITAALFLKEFVEKTPWAHLDIAGPVWNDNMGGATGYGVRLLTRWVQKQ 186
            IADLKNVG+R G +ITAALFLKEFV+KTPWAH+DIAGPVWN   GGATGYGVR LT W++KQ
Sbjct:  515 IADLKNVGSRYGGAITAALFLKEFVKKTPWAHIDIAGPVWNQKEGGATGYGVRTLTNWIKKQ 576
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BLAST of mRNA_S-dermatodea_contig12666.1641.1 vs. uniprot
Match: A0A7S4J1F4_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4J1F4_9EUKA)

HSP 1 Score: 97.1 bits (240), Expect = 1.210e-23
Identity = 45/59 (76.27%), Postives = 52/59 (88.14%), Query Frame = 1 
Query:    1 IADLKNVGARPGSSITAALFLKEFVEKTPWAHLDIAGPVWNDNMGGATGYGVRLLTRWV 177
            IADLKNVGA  G SITAALFLKEFV++TPWAH+DIAGPVW+D  GGATGY VR L+++V
Sbjct:  140 IADLKNVGAGGGGSITAALFLKEFVKETPWAHVDIAGPVWDDKKGGATGYAVRTLSKFV 198
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BLAST of mRNA_S-dermatodea_contig12666.1641.1 vs. uniprot
Match: A0A6P0XST9_9CYAN (Leucyl aminopeptidase (Fragment) n=1 Tax=Okeania sp. SIO2D1 TaxID=2607792 RepID=A0A6P0XST9_9CYAN)

HSP 1 Score: 92.4 bits (228), Expect = 3.820e-23
Identity = 43/63 (68.25%), Postives = 48/63 (76.19%), Query Frame = 1 
Query:    4 ADLKNVGARPGSSITAALFLKEFVEKTPWAHLDIAGPVWND-----NMGGATGYGVRLLTRWV 177
            AD+KN G RPG +ITAALFLK+FV+ TPWAHLD+AGPVW D     N  GATGYGVR L  WV
Sbjct:   23 ADMKNTGPRPGGAITAALFLKQFVQDTPWAHLDVAGPVWIDAENGYNNAGATGYGVRTLVNWV 85
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BLAST of mRNA_S-dermatodea_contig12666.1641.1 vs. uniprot
Match: A0A3D1PFZ4_9CYAN (Leucyl aminopeptidase (Fragment) n=1 Tax=Cyanobacteria bacterium UBA11049 TaxID=2055787 RepID=A0A3D1PFZ4_9CYAN)

HSP 1 Score: 94.7 bits (234), Expect = 5.580e-23
Identity = 44/64 (68.75%), Postives = 50/64 (78.12%), Query Frame = 1 
Query:    1 IADLKNVGARPGSSITAALFLKEFVEKTPWAHLDIAGPVWND-----NMGGATGYGVRLLTRWV 177
            IAD+KN G RPG SITAALFLK++V++TPWAHLDIAGPVW D     N  GATG+GVR L  WV
Sbjct:  113 IADMKNTGPRPGGSITAALFLKQYVKETPWAHLDIAGPVWTDKENGYNSAGATGFGVRTLVNWV 176
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BLAST of mRNA_S-dermatodea_contig12666.1641.1 vs. uniprot
Match: A0A7S2G445_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G445_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.140e-22
Identity = 43/61 (70.49%), Postives = 53/61 (86.89%), Query Frame = 1 
Query:    1 IADLKNVGARPGSSITAALFLKEFVEKTPWAHLDIAGPVWNDNMGGATGYGVRLLTRWVQK 183
            IADL+N+G + G +ITAALFLK FV+KTPWAH+DIAGPVW+D  GGATG+GVRL+T W+ K
Sbjct:  532 IADLQNIGGKGGGAITAALFLKHFVKKTPWAHIDIAGPVWDDAKGGATGFGVRLMTDWLLK 592
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BLAST of mRNA_S-dermatodea_contig12666.1641.1 vs. uniprot
Match: A0A7S3Z8D0_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z8D0_9EUKA)

HSP 1 Score: 99.0 bits (245), Expect = 1.150e-22
Identity = 46/62 (74.19%), Postives = 51/62 (82.26%), Query Frame = 1 
Query:    1 IADLKNVGARPGSSITAALFLKEFVEKTPWAHLDIAGPVWNDNMGGATGYGVRLLTRWVQKQ 186
            IADLKNVG R G SITAALFLKEFV KTPWAH+D+AGPVW+   GG+TGYGVR L  +V KQ
Sbjct:  552 IADLKNVGGRAGGSITAALFLKEFVTKTPWAHIDMAGPVWDAKAGGSTGYGVRTLVEFVAKQ 613
[Close]
BLAST of mRNA_S-dermatodea_contig12666.1641.1 vs. uniprot
Match: A0A836CNG8_9STRA (Leucyl aminopeptidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNG8_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 1.350e-22
Identity = 45/62 (72.58%), Postives = 53/62 (85.48%), Query Frame = 1 
Query:    1 IADLKNVGARPGSSITAALFLKEFVEKTPWAHLDIAGPVWNDNMGGATGYGVRLLTRWVQKQ 186
            +ADLKN+G + G SITAALFLKEFV+ TPWAH+D+AGPVW+D  G ATGYGVRLL+ WV KQ
Sbjct:  452 VADLKNIGGKGGGSITAALFLKEFVKDTPWAHIDMAGPVWSDKAG-ATGYGVRLLSNWVLKQ 512
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12666.1641.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JRN1_9PHAE4.270e-3293.65CYTOSOL_AP domain-containing protein n=2 Tax=Ectoc... [more]
A0A7S2GA21_9STRA6.470e-2976.56Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2RIM1_9STRA9.730e-2881.25Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2UVZ7_9STRA3.090e-2679.03Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4J1F4_9EUKA1.210e-2376.27Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A6P0XST9_9CYAN3.820e-2368.25Leucyl aminopeptidase (Fragment) n=1 Tax=Okeania s... [more]
A0A3D1PFZ4_9CYAN5.580e-2368.75Leucyl aminopeptidase (Fragment) n=1 Tax=Cyanobact... [more]
A0A7S2G445_9STRA1.140e-2270.49Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3Z8D0_9EUKA1.150e-2274.19Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A836CNG8_9STRA1.350e-2272.58Leucyl aminopeptidase n=1 Tax=Tribonema minus TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12666contigS-dermatodea_contig12666:5021..6122 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score126.3
Seed ortholog evalue5.1e-27
Seed eggNOG ortholog2880.D7FZ52
Preferred nameLAP
KEGG rclassRC00096,RC00141,RC02795
KEGG koko:K01255,ko:K03010
KEGG ReactionR00435,R00441,R00442,R00443,R00899,R04951
KEGG Pathwayko00230,ko00240,ko00480,ko01100,ko03020,ko05016,ko05169,map00230,map00240,map00480,map01100,map03020,map05016,map05169
KEGG ModuleM00180
GOsGO:0000287,GO:0003674,GO:0003824,GO:0004177,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005773,GO:0005829,GO:0006508,GO:0006807,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0008233,GO:0008238,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0010035,GO:0010038,GO:0010150,GO:0016043,GO:0016787,GO:0016805,GO:0019538,GO:0019904,GO:0022607,GO:0030145,GO:0032501,GO:0032502,GO:0034214,GO:0042221,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044238,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046686,GO:0046872,GO:0046914,GO:0048366,GO:0048367,GO:0048731,GO:0048827,GO:0048856,GO:0050896,GO:0051259,GO:0065003,GO:0070011,GO:0071704,GO:0071840,GO:0090693,GO:0097718,GO:0099402,GO:0140096,GO:1901564
EggNOG free text desc.manganese ion binding
EggNOG OGsCOG0260@1,KOG2597@2759
EC2.7.7.6,3.4.11.1
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko01002,ko03021,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size195
Cds size195
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924257.2748108-CDS-S-dermatodea_contig12666:5020..51341622924257.2748108-CDS-S-dermatodea_contig12666:5020..5134Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12666 5021..5134 -
1694079130.1452372-CDS-S-dermatodea_contig12666:5020..51341694079130.1452372-CDS-S-dermatodea_contig12666:5020..5134Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12666 5021..5134 -
1622924257.2872825-CDS-S-dermatodea_contig12666:6041..61221622924257.2872825-CDS-S-dermatodea_contig12666:6041..6122Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12666 6042..6122 -
1694079130.1614037-CDS-S-dermatodea_contig12666:6041..61221694079130.1614037-CDS-S-dermatodea_contig12666:6041..6122Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12666 6042..6122 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12666.1641.1prot_S-dermatodea_contig12666.1641.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12666 5021..6122 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12666.1641.1

>prot_S-dermatodea_contig12666.1641.1 ID=prot_S-dermatodea_contig12666.1641.1|Name=mRNA_S-dermatodea_contig12666.1641.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=65bp
IADLKNVGARPGSSITAALFLKEFVEKTPWAHLDIAGPVWNDNMGGATGY
GVRLLTRWVQKQGA*
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mRNA from alignment at S-dermatodea_contig12666:5021..6122-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12666.1641.1 ID=mRNA_S-dermatodea_contig12666.1641.1|Name=mRNA_S-dermatodea_contig12666.1641.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1102bp|location=Sequence derived from alignment at S-dermatodea_contig12666:5021..6122- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATCGCCGACCTCAAGAACGTGGGGGCGCGCCCGGGATCGTCCATTACGGC
GGCGCTGTTCCTCAAGGAGTTCGTAGAGAAGGTGAGCCGACTGTAGAGTA
ACGCGGGGGGGGGGGCTCAAGTTTCGCATTCGTCGGTCCCGCCCCTTTGG
GGATAGGGTTACGGTGTGTATATAAACAGGAGAAATCGGTAGAGCAGACC
TAAATAGTGTGTGTATTTTTTTGCCTTGTGCACACCTTTTTAAATGTCCG
ATCGCGGCCCCGTCTATGATGGCAATGGGGATCAGCCATCCCCACCCACC
TCTCCCTCGTACATGCTACCACTGTCCACATGTTTGATTTTCGTCGCGCA
ATGAATGGGTTTCCGCACCCCCGCAACTACCTCCCCGCCGATTTACCCGG
TGTCCGCGCTACAAAGAAATATGCTTTATCGCAAATCGCAAATCGTGCTA
ACACAACCGAAAACCTTGGTCAAAGCACTCGCCTTGCTACAGTAATAGTC
GTGGTTGTGTCCAACGCATGTGTTTCAAAATCGTGAAGCTGTTGAAACAC
CCTTCAATCGCCCCTCTCGTGGAGGTCTGCTGTCGGATCACGTATTGCGA
TTCGTTGAAATTCTTTGAAAACTTTGTTTTCATCACATATCCTGCTCGCT
GGTTTGATTGATTGATTTGATTTGATTTGCACACTGATGGTTACGATTAA
ACAAAGGCATGTGTTGCAATTCGCGAAAAACGATTAAAAACCTTAGCTCC
TCCATGAGTCAAATCAATCGCCTTGTTCGTCGTGATTGGGTCGAACAATT
TTTTGCAATCCGCGCAAAACTAACTTTTGGAAAACCTTGGGTTTACTTCA
GATCGATCGCCTTGCTCGTCGTGTTTACGTCGAATACTCTATTACCTAAT
CGGTGAAAACACCAACGCTTGAAATAAACCTTGGGTTCAACCCCGCACAA
TGACCGCCTTGCTCACGGCTTCCGGCTTCCCTCGGCAGACACCGTGGGCG
CACCTCGACATCGCGGGGCCCGTGTGGAACGACAACATGGGTGGAGCCAC
CGGCTACGGCGTGCGACTACTCACACGTTGGGTCCAGAAGCAGGGGGCGT
GA
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Coding sequence (CDS) from alignment at S-dermatodea_contig12666:5021..6122-

>mRNA_S-dermatodea_contig12666.1641.1 ID=mRNA_S-dermatodea_contig12666.1641.1|Name=mRNA_S-dermatodea_contig12666.1641.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at S-dermatodea_contig12666:5021..6122- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATCGCCGACCTCAAGAACGTGGGGGCGCGCCCGGGATCGTCCATTACGGC
GGCGCTGTTCCTCAAGGAGTTCGTAGAGAAGATCGCCGACCTCAAGAACG
TGGGGGCGCGCCCGGGATCGTCCATTACGGCGGCGCTGTTCCTCAAGGAG
TTCGTAGAGAAGACACCGTGGGCGCACCTCGACATCGCGGGGCCCGTGTG
GAACGACAACATGGGTGGAGCCACCGGCTACGGCGTGCGACTACTCACAC
GTTGGGTCCAGAAGCAGGGGGCGTGAACACCGTGGGCGCACCTCGACATC
GCGGGGCCCGTGTGGAACGACAACATGGGTGGAGCCACCGGCTACGGCGT
GCGACTACTCACACGTTGGGTCCAGAAGCAGGGGGCGTGA
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