mRNA_S-dermatodea_contig12662.1639.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12662.1639.1
Unique NamemRNA_S-dermatodea_contig12662.1639.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig12662.1639.1 vs. uniprot
Match: A0A6H5L9I0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9I0_9PHAE)

HSP 1 Score: 190 bits (482), Expect = 2.460e-59
Identity = 93/124 (75.00%), Postives = 104/124 (83.87%), Query Frame = 1
Query:    1 QRKNFTTSEKEEVIRFLLADSTAGVLKHGAYKAAAAKFGCYWKTIARLWKRYDVQHKAGVAFPQLGNRRKGNSGQKGIPIEELRLRLRDIPLNDRTTQRRLAAALGVPRATLHRNLKALGLRPH 372
            +RKNF  SEKEEVIR LL  S  GVL +GA+KAAA KFGC+W+T  RLW+RYD QHKAGV+ PQL NRR GNSG+KG+PIEELR RLRDIPLNDRTTQRRLAAAL +P  TLH+NLKALGLR H
Sbjct:   12 KRKNFNNSEKEEVIRHLLTGSKNGVLPYGAFKAAAEKFGCHWETNKRLWRRYDTQHKAGVSSPQLANRRNGNSGRKGVPIEELRERLRDIPLNDRTTQRRLAAALEIPLTTLHKNLKALGLRAH 135          
BLAST of mRNA_S-dermatodea_contig12662.1639.1 vs. uniprot
Match: A0A6H5KHK2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHK2_9PHAE)

HSP 1 Score: 181 bits (459), Expect = 1.910e-56
Identity = 88/124 (70.97%), Postives = 103/124 (83.06%), Query Frame = 1
Query:    1 QRKNFTTSEKEEVIRFLLADSTAGVLKHGAYKAAAAKFGCYWKTIARLWKRYDVQHKAGVAFPQLGNRRKGNSGQKGIPIEELRLRLRDIPLNDRTTQRRLAAALGVPRATLHRNLKALGLRPH 372
            +RKNF   E EEVIR+LL  S  GVL++GA+K A  KFG YW+TI RLW RYD QHKAGVA PQ+ NRRKGNSG++GIP+EEL+ R RDIPLN+RTTQRRLAAAL +P++TLHRNLKALGLR H
Sbjct:   12 KRKNFNEEETEEVIRYLLPGSKNGVLRYGAFKEAGEKFGWYWETIKRLWMRYDTQHKAGVASPQIDNRRKGNSGRQGIPLEELKERPRDIPLNERTTQRRLAAALVIPKSTLHRNLKALGLRAH 135          
BLAST of mRNA_S-dermatodea_contig12662.1639.1 vs. uniprot
Match: A0A6H5KRW0_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRW0_9PHAE)

HSP 1 Score: 161 bits (407), Expect = 1.160e-47
Identity = 76/124 (61.29%), Postives = 100/124 (80.65%), Query Frame = 1
Query:    1 QRKNFTTSEKEEVIRFLLADSTAGVLKHGAYKAAAAKFGCYWKTIARLWKRYDVQHKAGVAFPQLGNRRKGNSGQKGIPIEELRLRLRDIPLNDRTTQRRLAAALGVPRATLHRNLKALGLRPH 372
            +RKNF  SE+EEV+R+LLADS  GV +HG+Y  AA K+GC+W+TI R+W++++ + ++G     +GN RKG+SG KGI IE LR RL +IPLN+RTTQRRLAAALG+P++TLH NLKALGLR H
Sbjct:   12 KRKNFNVSEREEVVRYLLADSEDGVRQHGSYHRAAEKYGCHWETIKRIWQKHEKREESGDPSLYIGNDRKGHSGCKGIDIENLRARLLEIPLNERTTQRRLAAALGIPKSTLHNNLKALGLRAH 135          
BLAST of mRNA_S-dermatodea_contig12662.1639.1 vs. uniprot
Match: A0A6H5K5M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5M0_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 1.640e-47
Identity = 77/124 (62.10%), Postives = 97/124 (78.23%), Query Frame = 1
Query:    1 QRKNFTTSEKEEVIRFLLADSTAGVLKHGAYKAAAAKFGCYWKTIARLWKRYDVQHKAGVAFPQLGNRRKGNSGQKGIPIEELRLRLRDIPLNDRTTQRRLAAALGVPRATLHRNLKALGLRPH 372
            +RKNF   E+EEVIR LLA+S  GVL+HGAY+ AA K+GC WKTI  +W +++ +  AG     +GN RKGNSG+KGI +E+LR RLRDIPLN+RTTQRRLAAALG+P+ TL RNL+ LGL+ H
Sbjct:   12 KRKNFNALEREEVIRHLLANSEDGVLRHGAYQEAAEKYGCSWKTIKGVWAKHEQREAAGDPSAYIGNNRKGNSGRKGIDLEDLRTRLRDIPLNERTTQRRLAAALGIPQPTLFRNLEKLGLKAH 135          
BLAST of mRNA_S-dermatodea_contig12662.1639.1 vs. uniprot
Match: A0A6H5KLV4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLV4_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 3.770e-45
Identity = 75/122 (61.48%), Postives = 99/122 (81.15%), Query Frame = 1
Query:    1 QRKNFTTSEKEEVIRFLLADSTAGVLKHGAYKAAAAKFGCYWKTIARLWKRYDVQHKAGVAFPQLGNRRKGNSGQKGIPIEELRLRLRDIPLNDRTTQRRLAAALGVPRATLHRNLKALGLR 366
            +RKNF  SE+EEV+R+LLADS  GV +HG+Y  AA K+GC+W+TI R+W++++ + ++G     +GN RKG+SG KGI IE LR RL +IPLN+RTTQRRLAAALG+P++TLH NLKALGLR
Sbjct:   12 KRKNFNVSEREEVVRYLLADSEDGVRQHGSYHRAAEKYGCHWETIKRIWQKHEKREESGDPSLYIGNDRKGHSGCKGIDIENLRARLLEIPLNERTTQRRLAAALGIPKSTLHNNLKALGLR 133          
BLAST of mRNA_S-dermatodea_contig12662.1639.1 vs. uniprot
Match: A0A6H5JEL2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEL2_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 2.020e-34
Identity = 61/74 (82.43%), Postives = 68/74 (91.89%), Query Frame = 1
Query:  151 RYDVQHKAGVAFPQLGNRRKGNSGQKGIPIEELRLRLRDIPLNDRTTQRRLAAALGVPRATLHRNLKALGLRPH 372
            RYD QHKAGVA PQ+ NRRKGNSG+KGIP+EEL+ RLRDIPLNDRTTQRRLAAALG+P++TLHRNLK LGLR H
Sbjct:    2 RYDTQHKAGVASPQIENRRKGNSGRKGIPLEELKERLRDIPLNDRTTQRRLAAALGIPKSTLHRNLKVLGLRAH 75          
BLAST of mRNA_S-dermatodea_contig12662.1639.1 vs. uniprot
Match: A0A6H5KBK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBK8_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 3.280e-32
Identity = 60/78 (76.92%), Postives = 66/78 (84.62%), Query Frame = 1
Query:  139 RLWKRYDVQHKAGVAFPQLGNRRKGNSGQKGIPIEELRLRLRDIPLNDRTTQRRLAAALGVPRATLHRNLKALGLRPH 372
            RLW RY+ Q KAGVA P++GN RKGNSG+KGIPI+ELR RLRDIPLNDRTTQRRLAAALG+   TL  NLKALGLR H
Sbjct:   19 RLWVRYEAQRKAGVARPKIGNLRKGNSGRKGIPIQELRERLRDIPLNDRTTQRRLAAALGIATTTLFDNLKALGLRAH 96          
BLAST of mRNA_S-dermatodea_contig12662.1639.1 vs. uniprot
Match: A0A6H5JAZ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAZ0_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 2.450e-30
Identity = 58/74 (78.38%), Postives = 65/74 (87.84%), Query Frame = 1
Query:  151 RYDVQHKAGVAFPQLGNRRKGNSGQKGIPIEELRLRLRDIPLNDRTTQRRLAAALGVPRATLHRNLKALGLRPH 372
            RY  QHKAGVA P++ NRR GNSG+KGIP+EELR RLRDIPLN RTTQRRLAAALG+P++TLHRN KALGLR H
Sbjct:    2 RYYTQHKAGVASPKIENRRMGNSGRKGIPLEELRERLRDIPLN-RTTQRRLAAALGIPKSTLHRNPKALGLRAH 74          
BLAST of mRNA_S-dermatodea_contig12662.1639.1 vs. uniprot
Match: A0A6H5LD91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD91_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 3.230e-22
Identity = 52/106 (49.06%), Postives = 68/106 (64.15%), Query Frame = 1
Query:   49 LLADSTAGVLKHGAYKAAAAKFGCYWKTIARLWKRYDVQHKAGVAFPQLGNRRKGNSGQKGIPIEELRLRLRDIPLNDRTTQRRLAAALGVPRATLHRNLKALGLR 366
            LL  S  G L HG  K   A +    KT+++ WK Y+ + +AG   P L N+RKGNSGQKG+ I  L+  L+DI L +RTT R +AAALG+P++TL  NL  LGLR
Sbjct:    5 LLKGSNNGALSHGDVKRVVAIYKQTPKTVSKYWKLYNQKKEAGEEDPDLHNKRKGNSGQKGLDIATLKEALQDIHLKNRTTIRSIAAALGIPKSTLFDNLNNLGLR 110          
BLAST of mRNA_S-dermatodea_contig12662.1639.1 vs. uniprot
Match: A0A0A9GMZ7_ARUDO (Uncharacterized protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9GMZ7_ARUDO)

HSP 1 Score: 67.4 bits (163), Expect = 2.330e-11
Identity = 41/122 (33.61%), Postives = 67/122 (54.92%), Query Frame = 1
Query:    7 KNFTTSEKEEVIRFLLADSTAGVLKHGAYKAAAAKFGCYWKTIARLWKRYDVQHKAGVAFPQLGNRRKGNSGQKGIPIEELRLRLRDIPLNDRTTQRRLAAALGVPRATLHRNLKALGLRPH 372
            KN T ++++E+   LLA S  G+L        A ++    +T+ R+W R       GV   ++ +R+  N G+K I ++  ++    IPLN+R+T +RLA  LGV +++LHR  K   LR H
Sbjct:   57 KNLTNTQRQEIYEALLATSNRGILNKDCTTILAEQYNVSIRTVQRVWNRSKECRSNGVPV-EVSSRKASNYGRKKIQVDLSQVA--SIPLNNRSTLKRLAKELGVSKSSLHRWFKQGLLRRH 175          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12662.1639.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L9I0_9PHAE2.460e-5975.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHK2_9PHAE1.910e-5670.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRW0_9PHAE1.160e-4761.29Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5M0_9PHAE1.640e-4762.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLV4_9PHAE3.770e-4561.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEL2_9PHAE2.020e-3482.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBK8_9PHAE3.280e-3276.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAZ0_9PHAE2.450e-3078.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LD91_9PHAE3.230e-2249.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0A9GMZ7_ARUDO2.330e-1133.61Uncharacterized protein n=1 Tax=Arundo donax TaxID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12662contigS-dermatodea_contig12662:4975..5346 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.8
Seed ortholog evalue3.8e-15
Seed eggNOG ortholog4787.PITG_01792T0
EggNOG OGs2CZ3T@1,2S88G@2759,3QCT3@4776
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size372
Cds size372
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924257.1998048-CDS-S-dermatodea_contig12662:4974..53461622924257.1998048-CDS-S-dermatodea_contig12662:4974..5346Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12662 4975..5346 -
1694079130.1138365-CDS-S-dermatodea_contig12662:4974..53461694079130.1138365-CDS-S-dermatodea_contig12662:4974..5346Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12662 4975..5346 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12662.1639.1prot_S-dermatodea_contig12662.1639.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12662 4975..5346 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12662.1639.1

>prot_S-dermatodea_contig12662.1639.1 ID=prot_S-dermatodea_contig12662.1639.1|Name=mRNA_S-dermatodea_contig12662.1639.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=124bp
QRKNFTTSEKEEVIRFLLADSTAGVLKHGAYKAAAAKFGCYWKTIARLWK
RYDVQHKAGVAFPQLGNRRKGNSGQKGIPIEELRLRLRDIPLNDRTTQRR
LAAALGVPRATLHRNLKALGLRPH
back to top

mRNA from alignment at S-dermatodea_contig12662:4975..5346-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12662.1639.1 ID=mRNA_S-dermatodea_contig12662.1639.1|Name=mRNA_S-dermatodea_contig12662.1639.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=372bp|location=Sequence derived from alignment at S-dermatodea_contig12662:4975..5346- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAACGCAAGAATTTTACCACTTCGGAAAAAGAGGAGGTGATTCGGTTCCT TCTCGCCGACAGCACGGCCGGGGTTCTGAAACATGGTGCGTACAAGGCGG CCGCGGCGAAGTTCGGCTGCTACTGGAAGACGATTGCTAGATTGTGGAAG AGATACGATGTGCAGCATAAAGCAGGAGTCGCTTTCCCACAGCTGGGAAA CCGTCGCAAGGGAAACAGCGGCCAGAAGGGTATCCCCATCGAAGAACTAC GTCTGCGCCTGCGTGATATCCCGCTGAACGACCGCACCACACAGCGCCGC TTGGCTGCGGCGCTCGGGGTTCCTCGAGCCACGCTGCACAGGAACCTCAA GGCGCTTGGATTGAGGCCACAC
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig12662:4975..5346-

>mRNA_S-dermatodea_contig12662.1639.1 ID=mRNA_S-dermatodea_contig12662.1639.1|Name=mRNA_S-dermatodea_contig12662.1639.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=744bp|location=Sequence derived from alignment at S-dermatodea_contig12662:4975..5346- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAACGCAAGAATTTTACCACTTCGGAAAAAGAGGAGGTGATTCGGTTCCT
TCTCGCCGACAGCACGGCCGGGGTTCTGAAACATGGTGCGTACAAGGCGG
CCGCGGCGAAGTTCGGCTGCTACTGGAAGACGATTGCTAGATTGTGGAAG
AGATACGATGTGCAGCATAAAGCAGGAGTCGCTTTCCCACAGCTGGGAAA
CCGTCGCAAGGGAAACAGCGGCCAGAAGGGTATCCCCATCGAAGAACTAC
GTCTGCGCCTGCGTGATATCCCGCTGAACGACCGCACCACACAGCGCCGC
TTGGCTGCGGCGCTCGGGGTTCCTCGAGCCACGCTGCACAGGAACCTCAA
GGCGCTTGGATTGAGGCCACACCAACGCAAGAATTTTACCACTTCGGAAA
AAGAGGAGGTGATTCGGTTCCTTCTCGCCGACAGCACGGCCGGGGTTCTG
AAACATGGTGCGTACAAGGCGGCCGCGGCGAAGTTCGGCTGCTACTGGAA
GACGATTGCTAGATTGTGGAAGAGATACGATGTGCAGCATAAAGCAGGAG
TCGCTTTCCCACAGCTGGGAAACCGTCGCAAGGGAAACAGCGGCCAGAAG
GGTATCCCCATCGAAGAACTACGTCTGCGCCTGCGTGATATCCCGCTGAA
CGACCGCACCACACAGCGCCGCTTGGCTGCGGCGCTCGGGGTTCCTCGAG
CCACGCTGCACAGGAACCTCAAGGCGCTTGGATTGAGGCCACAC
back to top