mRNA_S-dermatodea_contig12662.1639.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig12662.1639.1 vs. uniprot
Match: A0A6H5L9I0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9I0_9PHAE) HSP 1 Score: 190 bits (482), Expect = 2.460e-59 Identity = 93/124 (75.00%), Postives = 104/124 (83.87%), Query Frame = 1
Query: 1 QRKNFTTSEKEEVIRFLLADSTAGVLKHGAYKAAAAKFGCYWKTIARLWKRYDVQHKAGVAFPQLGNRRKGNSGQKGIPIEELRLRLRDIPLNDRTTQRRLAAALGVPRATLHRNLKALGLRPH 372
+RKNF SEKEEVIR LL S GVL +GA+KAAA KFGC+W+T RLW+RYD QHKAGV+ PQL NRR GNSG+KG+PIEELR RLRDIPLNDRTTQRRLAAAL +P TLH+NLKALGLR H
Sbjct: 12 KRKNFNNSEKEEVIRHLLTGSKNGVLPYGAFKAAAEKFGCHWETNKRLWRRYDTQHKAGVSSPQLANRRNGNSGRKGVPIEELRERLRDIPLNDRTTQRRLAAALEIPLTTLHKNLKALGLRAH 135
BLAST of mRNA_S-dermatodea_contig12662.1639.1 vs. uniprot
Match: A0A6H5KHK2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHK2_9PHAE) HSP 1 Score: 181 bits (459), Expect = 1.910e-56 Identity = 88/124 (70.97%), Postives = 103/124 (83.06%), Query Frame = 1
Query: 1 QRKNFTTSEKEEVIRFLLADSTAGVLKHGAYKAAAAKFGCYWKTIARLWKRYDVQHKAGVAFPQLGNRRKGNSGQKGIPIEELRLRLRDIPLNDRTTQRRLAAALGVPRATLHRNLKALGLRPH 372
+RKNF E EEVIR+LL S GVL++GA+K A KFG YW+TI RLW RYD QHKAGVA PQ+ NRRKGNSG++GIP+EEL+ R RDIPLN+RTTQRRLAAAL +P++TLHRNLKALGLR H
Sbjct: 12 KRKNFNEEETEEVIRYLLPGSKNGVLRYGAFKEAGEKFGWYWETIKRLWMRYDTQHKAGVASPQIDNRRKGNSGRQGIPLEELKERPRDIPLNERTTQRRLAAALVIPKSTLHRNLKALGLRAH 135
BLAST of mRNA_S-dermatodea_contig12662.1639.1 vs. uniprot
Match: A0A6H5KRW0_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRW0_9PHAE) HSP 1 Score: 161 bits (407), Expect = 1.160e-47 Identity = 76/124 (61.29%), Postives = 100/124 (80.65%), Query Frame = 1
Query: 1 QRKNFTTSEKEEVIRFLLADSTAGVLKHGAYKAAAAKFGCYWKTIARLWKRYDVQHKAGVAFPQLGNRRKGNSGQKGIPIEELRLRLRDIPLNDRTTQRRLAAALGVPRATLHRNLKALGLRPH 372
+RKNF SE+EEV+R+LLADS GV +HG+Y AA K+GC+W+TI R+W++++ + ++G +GN RKG+SG KGI IE LR RL +IPLN+RTTQRRLAAALG+P++TLH NLKALGLR H
Sbjct: 12 KRKNFNVSEREEVVRYLLADSEDGVRQHGSYHRAAEKYGCHWETIKRIWQKHEKREESGDPSLYIGNDRKGHSGCKGIDIENLRARLLEIPLNERTTQRRLAAALGIPKSTLHNNLKALGLRAH 135
BLAST of mRNA_S-dermatodea_contig12662.1639.1 vs. uniprot
Match: A0A6H5K5M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5M0_9PHAE) HSP 1 Score: 159 bits (401), Expect = 1.640e-47 Identity = 77/124 (62.10%), Postives = 97/124 (78.23%), Query Frame = 1
Query: 1 QRKNFTTSEKEEVIRFLLADSTAGVLKHGAYKAAAAKFGCYWKTIARLWKRYDVQHKAGVAFPQLGNRRKGNSGQKGIPIEELRLRLRDIPLNDRTTQRRLAAALGVPRATLHRNLKALGLRPH 372
+RKNF E+EEVIR LLA+S GVL+HGAY+ AA K+GC WKTI +W +++ + AG +GN RKGNSG+KGI +E+LR RLRDIPLN+RTTQRRLAAALG+P+ TL RNL+ LGL+ H
Sbjct: 12 KRKNFNALEREEVIRHLLANSEDGVLRHGAYQEAAEKYGCSWKTIKGVWAKHEQREAAGDPSAYIGNNRKGNSGRKGIDLEDLRTRLRDIPLNERTTQRRLAAALGIPQPTLFRNLEKLGLKAH 135
BLAST of mRNA_S-dermatodea_contig12662.1639.1 vs. uniprot
Match: A0A6H5KLV4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLV4_9PHAE) HSP 1 Score: 158 bits (400), Expect = 3.770e-45 Identity = 75/122 (61.48%), Postives = 99/122 (81.15%), Query Frame = 1
Query: 1 QRKNFTTSEKEEVIRFLLADSTAGVLKHGAYKAAAAKFGCYWKTIARLWKRYDVQHKAGVAFPQLGNRRKGNSGQKGIPIEELRLRLRDIPLNDRTTQRRLAAALGVPRATLHRNLKALGLR 366
+RKNF SE+EEV+R+LLADS GV +HG+Y AA K+GC+W+TI R+W++++ + ++G +GN RKG+SG KGI IE LR RL +IPLN+RTTQRRLAAALG+P++TLH NLKALGLR
Sbjct: 12 KRKNFNVSEREEVVRYLLADSEDGVRQHGSYHRAAEKYGCHWETIKRIWQKHEKREESGDPSLYIGNDRKGHSGCKGIDIENLRARLLEIPLNERTTQRRLAAALGIPKSTLHNNLKALGLR 133
BLAST of mRNA_S-dermatodea_contig12662.1639.1 vs. uniprot
Match: A0A6H5JEL2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEL2_9PHAE) HSP 1 Score: 127 bits (319), Expect = 2.020e-34 Identity = 61/74 (82.43%), Postives = 68/74 (91.89%), Query Frame = 1
Query: 151 RYDVQHKAGVAFPQLGNRRKGNSGQKGIPIEELRLRLRDIPLNDRTTQRRLAAALGVPRATLHRNLKALGLRPH 372
RYD QHKAGVA PQ+ NRRKGNSG+KGIP+EEL+ RLRDIPLNDRTTQRRLAAALG+P++TLHRNLK LGLR H
Sbjct: 2 RYDTQHKAGVASPQIENRRKGNSGRKGIPLEELKERLRDIPLNDRTTQRRLAAALGIPKSTLHRNLKVLGLRAH 75
BLAST of mRNA_S-dermatodea_contig12662.1639.1 vs. uniprot
Match: A0A6H5KBK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBK8_9PHAE) HSP 1 Score: 120 bits (300), Expect = 3.280e-32 Identity = 60/78 (76.92%), Postives = 66/78 (84.62%), Query Frame = 1
Query: 139 RLWKRYDVQHKAGVAFPQLGNRRKGNSGQKGIPIEELRLRLRDIPLNDRTTQRRLAAALGVPRATLHRNLKALGLRPH 372
RLW RY+ Q KAGVA P++GN RKGNSG+KGIPI+ELR RLRDIPLNDRTTQRRLAAALG+ TL NLKALGLR H
Sbjct: 19 RLWVRYEAQRKAGVARPKIGNLRKGNSGRKGIPIQELRERLRDIPLNDRTTQRRLAAALGIATTTLFDNLKALGLRAH 96
BLAST of mRNA_S-dermatodea_contig12662.1639.1 vs. uniprot
Match: A0A6H5JAZ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAZ0_9PHAE) HSP 1 Score: 113 bits (282), Expect = 2.450e-30 Identity = 58/74 (78.38%), Postives = 65/74 (87.84%), Query Frame = 1
Query: 151 RYDVQHKAGVAFPQLGNRRKGNSGQKGIPIEELRLRLRDIPLNDRTTQRRLAAALGVPRATLHRNLKALGLRPH 372
RY QHKAGVA P++ NRR GNSG+KGIP+EELR RLRDIPLN RTTQRRLAAALG+P++TLHRN KALGLR H
Sbjct: 2 RYYTQHKAGVASPKIENRRMGNSGRKGIPLEELRERLRDIPLN-RTTQRRLAAALGIPKSTLHRNPKALGLRAH 74
BLAST of mRNA_S-dermatodea_contig12662.1639.1 vs. uniprot
Match: A0A6H5LD91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD91_9PHAE) HSP 1 Score: 95.5 bits (236), Expect = 3.230e-22 Identity = 52/106 (49.06%), Postives = 68/106 (64.15%), Query Frame = 1
Query: 49 LLADSTAGVLKHGAYKAAAAKFGCYWKTIARLWKRYDVQHKAGVAFPQLGNRRKGNSGQKGIPIEELRLRLRDIPLNDRTTQRRLAAALGVPRATLHRNLKALGLR 366
LL S G L HG K A + KT+++ WK Y+ + +AG P L N+RKGNSGQKG+ I L+ L+DI L +RTT R +AAALG+P++TL NL LGLR
Sbjct: 5 LLKGSNNGALSHGDVKRVVAIYKQTPKTVSKYWKLYNQKKEAGEEDPDLHNKRKGNSGQKGLDIATLKEALQDIHLKNRTTIRSIAAALGIPKSTLFDNLNNLGLR 110
BLAST of mRNA_S-dermatodea_contig12662.1639.1 vs. uniprot
Match: A0A0A9GMZ7_ARUDO (Uncharacterized protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9GMZ7_ARUDO) HSP 1 Score: 67.4 bits (163), Expect = 2.330e-11 Identity = 41/122 (33.61%), Postives = 67/122 (54.92%), Query Frame = 1
Query: 7 KNFTTSEKEEVIRFLLADSTAGVLKHGAYKAAAAKFGCYWKTIARLWKRYDVQHKAGVAFPQLGNRRKGNSGQKGIPIEELRLRLRDIPLNDRTTQRRLAAALGVPRATLHRNLKALGLRPH 372
KN T ++++E+ LLA S G+L A ++ +T+ R+W R GV ++ +R+ N G+K I ++ ++ IPLN+R+T +RLA LGV +++LHR K LR H
Sbjct: 57 KNLTNTQRQEIYEALLATSNRGILNKDCTTILAEQYNVSIRTVQRVWNRSKECRSNGVPV-EVSSRKASNYGRKKIQVDLSQVA--SIPLNNRSTLKRLAKELGVSKSSLHRWFKQGLLRRH 175 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12662.1639.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig12662.1639.1 >prot_S-dermatodea_contig12662.1639.1 ID=prot_S-dermatodea_contig12662.1639.1|Name=mRNA_S-dermatodea_contig12662.1639.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=124bp QRKNFTTSEKEEVIRFLLADSTAGVLKHGAYKAAAAKFGCYWKTIARLWKback to top mRNA from alignment at S-dermatodea_contig12662:4975..5346- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig12662.1639.1 ID=mRNA_S-dermatodea_contig12662.1639.1|Name=mRNA_S-dermatodea_contig12662.1639.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=372bp|location=Sequence derived from alignment at S-dermatodea_contig12662:4975..5346- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig12662:4975..5346- >mRNA_S-dermatodea_contig12662.1639.1 ID=mRNA_S-dermatodea_contig12662.1639.1|Name=mRNA_S-dermatodea_contig12662.1639.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=744bp|location=Sequence derived from alignment at S-dermatodea_contig12662:4975..5346- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |