mRNA_S-dermatodea_contig12656.1637.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig12656.1637.1 vs. uniprot
Match: D7FWI9_ECTSI (Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7FWI9_ECTSI) HSP 1 Score: 216 bits (551), Expect = 7.440e-71 Identity = 116/124 (93.55%), Postives = 118/124 (95.16%), Query Frame = 1
Query: 1 MSGKGKGGRGDAKKSTTRSAKAGLQFPVGRIGRFLKAGKYAQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKAPKK 372
MSGKGKGGRG KKSTTRSAKAGLQFPVGR+GRFLK GKYA RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK KK
Sbjct: 1 MSGKGKGGRG--KKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVKK 122
BLAST of mRNA_S-dermatodea_contig12656.1637.1 vs. uniprot
Match: D7G193_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G193_ECTSI) HSP 1 Score: 214 bits (546), Expect = 2.540e-69 Identity = 115/123 (93.50%), Postives = 117/123 (95.12%), Query Frame = 1
Query: 1 MSGKGKGGRGDAKKSTTRSAKAGLQFPVGRIGRFLKAGKYAQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKAPK 369
MSGKGKGGRG KKSTTRSAKAGLQFPVGR+GRFLK GKYA RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK K
Sbjct: 46 MSGKGKGGRG--KKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVK 166
BLAST of mRNA_S-dermatodea_contig12656.1637.1 vs. uniprot
Match: A0A6H5KG79_9PHAE (Histone H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG79_9PHAE) HSP 1 Score: 206 bits (525), Expect = 1.050e-66 Identity = 110/121 (90.91%), Postives = 116/121 (95.87%), Query Frame = 1
Query: 1 MSGKGKGGRGDAKKSTTRSAKAGLQFPVGRIGRFLKAGKYAQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKA 363
MSGKGKGGRG KKST++S+KAGLQFPV RIGR+LK GKYA RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK+
Sbjct: 1 MSGKGKGGRG--KKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKS 119
BLAST of mRNA_S-dermatodea_contig12656.1637.1 vs. uniprot
Match: D7FVQ5_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVQ5_ECTSI) HSP 1 Score: 206 bits (525), Expect = 5.360e-66 Identity = 110/121 (90.91%), Postives = 116/121 (95.87%), Query Frame = 1
Query: 1 MSGKGKGGRGDAKKSTTRSAKAGLQFPVGRIGRFLKAGKYAQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKA 363
MSGKGKGGRG KKST++S+KAGLQFPV RIGR+LK GKYA RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK+
Sbjct: 52 MSGKGKGGRG--KKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKS 170
BLAST of mRNA_S-dermatodea_contig12656.1637.1 vs. uniprot
Match: A0A836CG77_9STRA (Histone H2A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG77_9STRA) HSP 1 Score: 203 bits (516), Expect = 2.030e-65 Identity = 106/121 (87.60%), Postives = 116/121 (95.87%), Query Frame = 1
Query: 1 MSGKGKGGRG-DAKKSTTRSAKAGLQFPVGRIGRFLKAGKYAQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 360
M+GKGKGGRG +AKKST++S+KAGLQFPV R+GRFLK G+YA+RVGAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RIVPRHIQLAVRNDEELNKLLG VTIASGGVLPNIHAVLLPKK
Sbjct: 1 MAGKGKGGRGAEAKKSTSKSSKAGLQFPVARLGRFLKVGRYAERVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHIQLAVRNDEELNKLLGNVTIASGGVLPNIHAVLLPKK 121
BLAST of mRNA_S-dermatodea_contig12656.1637.1 vs. uniprot
Match: D8LLP0_ECTSI (Histone H2A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLP0_ECTSI) HSP 1 Score: 202 bits (514), Expect = 2.960e-65 Identity = 107/120 (89.17%), Postives = 113/120 (94.17%), Query Frame = 1
Query: 1 MSGKGKGGRGDAKKSTTRSAKAGLQFPVGRIGRFLKAGKYAQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 360
MSGKGKGGRG KK T+RSAKAGLQFPVGRIGRF+K GKY+ RVG GAPVY+AAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELN+LLG+ TIASGGVLPNIHAVLLPKK
Sbjct: 1 MSGKGKGGRG--KKITSRSAKAGLQFPVGRIGRFIKQGKYSSRVGGGAPVYMAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNRLLGDATIASGGVLPNIHAVLLPKK 118
BLAST of mRNA_S-dermatodea_contig12656.1637.1 vs. uniprot
Match: A0A448ZH28_9STRA (Histone H2A n=12 Tax=Bacillariophyta TaxID=2836 RepID=A0A448ZH28_9STRA) HSP 1 Score: 200 bits (509), Expect = 1.880e-64 Identity = 106/123 (86.18%), Postives = 115/123 (93.50%), Query Frame = 1
Query: 1 MSGKGKGGRGDAKKSTTRSAKAGLQFPVGRIGRFLKAGKYAQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKAPK 369
MSGKGKGGRG+ KKSTT SAKAGLQFPVGRIGR+L+ GKYA R+GAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RIVPRHI LAV+NDEELNKLLG VTIASGGVLPNIHA+LLPKK+ K
Sbjct: 1 MSGKGKGGRGE-KKSTTASAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAILLPKKSGK 122
BLAST of mRNA_S-dermatodea_contig12656.1637.1 vs. uniprot
Match: A0A6U2JFS4_9STRA (Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 RepID=A0A6U2JFS4_9STRA) HSP 1 Score: 200 bits (509), Expect = 1.880e-64 Identity = 107/123 (86.99%), Postives = 114/123 (92.68%), Query Frame = 1
Query: 1 MSGKGKGGRGDAKKSTTRSAKAGLQFPVGRIGRFLKAGKYAQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKAPK 369
MSGKGKGGRG KKSTT SAKAGLQFPVGRIGR+L+ GKYA R+GAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RIVPRHI LAV+NDEELNKLLG VTIASGGVLPNIHAVLLPKK+ K
Sbjct: 1 MSGKGKGGRG-GKKSTTSSAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAVLLPKKSAK 122
BLAST of mRNA_S-dermatodea_contig12656.1637.1 vs. uniprot
Match: A0A7S0DT92_9EUKA (Histone H2A n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DT92_9EUKA) HSP 1 Score: 200 bits (508), Expect = 7.830e-64 Identity = 107/131 (81.68%), Postives = 117/131 (89.31%), Query Frame = 1
Query: 1 MSGKGKGGRGDAK--KSTTRSAKAGLQFPVGRIGRFLKAGKYAQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK-----APKK 372
MSGKGKGGRG K KSTTRSA+AGLQFPVGRI RFL+ G++A RVG GAPVYLAAVLEYLTAE+LELAGNAARDNK++RI+PRH+QLA+RNDEELNKLLG VTIASGGVLPNIHAVLLPKK APKK
Sbjct: 1 MSGKGKGGRGKGKAVKSTTRSARAGLQFPVGRISRFLRKGRFAARVGGGAPVYLAAVLEYLTAEILELAGNAARDNKRSRIIPRHVQLAIRNDEELNKLLGGVTIASGGVLPNIHAVLLPKKKATSSAPKK 131
BLAST of mRNA_S-dermatodea_contig12656.1637.1 vs. uniprot
Match: A0A087GH79_ARAAL (Histone H2A n=3 Tax=Pentapetalae TaxID=1437201 RepID=A0A087GH79_ARAAL) HSP 1 Score: 199 bits (505), Expect = 1.030e-63 Identity = 106/122 (86.89%), Postives = 115/122 (94.26%), Query Frame = 1
Query: 1 MSGKGKG-GRGDAKKSTTRSAKAGLQFPVGRIGRFLKAGKYAQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKA 363
MSG+GK G G +KKSTTRS+KAGLQFPVGRI RFLKAGKYA+RVGAGAPVYLAAVLEYL AEVLELAGNAARDNKK RIVPRHIQLAVRNDEEL+KLLGEVTIA+GGV+PNIH++LLPKKA
Sbjct: 1 MSGRGKTLGSGASKKSTTRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGEVTIANGGVMPNIHSLLLPKKA 122 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12656.1637.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig12656.1637.1 >prot_S-dermatodea_contig12656.1637.1 ID=prot_S-dermatodea_contig12656.1637.1|Name=mRNA_S-dermatodea_contig12656.1637.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=125bp MSGKGKGGRGDAKKSTTRSAKAGLQFPVGRIGRFLKAGKYAQRVGAGAPVback to top mRNA from alignment at S-dermatodea_contig12656:1669..2043+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig12656.1637.1 ID=mRNA_S-dermatodea_contig12656.1637.1|Name=mRNA_S-dermatodea_contig12656.1637.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=375bp|location=Sequence derived from alignment at S-dermatodea_contig12656:1669..2043+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig12656:1669..2043+ >mRNA_S-dermatodea_contig12656.1637.1 ID=mRNA_S-dermatodea_contig12656.1637.1|Name=mRNA_S-dermatodea_contig12656.1637.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at S-dermatodea_contig12656:1669..2043+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |