mRNA_S-dermatodea_contig12656.1636.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12656.1636.1
Unique NamemRNA_S-dermatodea_contig12656.1636.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12656.1636.1 vs. uniprot
Match: D7FWI8_ECTSI (Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7FWI8_ECTSI)

HSP 1 Score: 214 bits (545), Expect = 3.630e-70
Identity = 114/116 (98.28%), Postives = 115/116 (99.14%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGDKKKRNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKKSAKAPKKAGDKK+ NKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKTPSKKSAKAPKKAGDKKRTNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116
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BLAST of mRNA_S-dermatodea_contig12656.1636.1 vs. uniprot
Match: A0A6U0X3U9_9STRA (Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 RepID=A0A6U0X3U9_9STRA)

HSP 1 Score: 199 bits (507), Expect = 3.680e-64
Identity = 103/116 (88.79%), Postives = 113/116 (97.41%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGDKKKRNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKKSAKAPKKAGDK K+ KRTESYSSYIYKVLKQVHP+TGISK+GMSIMNSFIND+FER+AGE+G+L RY+KKATLSSRE+QT+VRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   15 MAKTPSKKSAKAPKKAGDKVKKGKRTESYSSYIYKVLKQVHPETGISKKGMSIMNSFINDIFERLAGEAGRLARYSKKATLSSREIQTSVRLMLPGELAKHAVSEGTKAVTKFTSS 130
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BLAST of mRNA_S-dermatodea_contig12656.1636.1 vs. uniprot
Match: A0A836CJ22_9STRA (Histone H2B n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ22_9STRA)

HSP 1 Score: 196 bits (498), Expect = 5.690e-63
Identity = 105/117 (89.74%), Postives = 111/117 (94.87%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGD-KKKRNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAK PSKK+AKAPKKA D KKK+ KRTESY SYIYKVLKQVHPDTGISKRGMSIMNSFINDVFER+A E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 117
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BLAST of mRNA_S-dermatodea_contig12656.1636.1 vs. uniprot
Match: H2B_OLILU (Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=83000 RepID=H2B_OLILU)

HSP 1 Score: 192 bits (487), Expect = 2.380e-61
Identity = 100/116 (86.21%), Postives = 110/116 (94.83%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGDKKKRNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKK+AKAPKKAG K  RNKR E+YSSYIYKVLKQVHPDTGISKRGMSIMNSFIND+FER+AGE+ +L RYNK++TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTS+
Sbjct:    1 MAKTPSKKAAKAPKKAGSK--RNKRVETYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDIFERLAGEASRLARYNKRSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSN 114
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BLAST of mRNA_S-dermatodea_contig12656.1636.1 vs. uniprot
Match: A0A836CJT3_9STRA (Histone H2B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJT3_9STRA)

HSP 1 Score: 196 bits (498), Expect = 3.920e-61
Identity = 105/117 (89.74%), Postives = 111/117 (94.87%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGD-KKKRNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAK PSKK+AKAPKKA D KKK+ KRTESY SYIYKVLKQVHPDTGISKRGMSIMNSFINDVFER+A E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:  134 MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 250
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BLAST of mRNA_S-dermatodea_contig12656.1636.1 vs. uniprot
Match: A0A485K2U0_9STRA (Histone H2B n=29 Tax=Stramenopiles TaxID=33634 RepID=A0A485K2U0_9STRA)

HSP 1 Score: 190 bits (483), Expect = 1.140e-60
Identity = 101/118 (85.59%), Postives = 110/118 (93.22%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGDKKKRNK--RTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKKSAKAPKK G+K K  K  R ESYS+YIYKVLKQVHP+TGISKRGMSIMNSFIND+FER+A E+GKL+RYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKTPSKKSAKAPKKTGEKGKNRKVKRIESYSTYIYKVLKQVHPETGISKRGMSIMNSFINDIFERIASEAGKLSRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 118
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BLAST of mRNA_S-dermatodea_contig12656.1636.1 vs. uniprot
Match: B7FWR8_PHATC (Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 RepID=B7FWR8_PHATC)

HSP 1 Score: 188 bits (477), Expect = 8.490e-60
Identity = 99/116 (85.34%), Postives = 107/116 (92.24%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGDKKKRNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSK+SAKAPKKA    K  KRTE+YSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL  YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+SS
Sbjct:    1 MAKTPSKQSAKAPKKAATGTKSKKRTETYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIATEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSS 116
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BLAST of mRNA_S-dermatodea_contig12656.1636.1 vs. uniprot
Match: A0A6U6DWX5_9STRA (Histone H2B n=4 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6DWX5_9STRA)

HSP 1 Score: 186 bits (471), Expect = 8.190e-59
Identity = 100/116 (86.21%), Postives = 110/116 (94.83%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGDKKKRNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKK+A APKKAG K+ R KRTESYSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S+
Sbjct:    8 MAKTPSKKAA-APKKAGGKRSR-KRTESYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIASEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSA 121
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BLAST of mRNA_S-dermatodea_contig12656.1636.1 vs. uniprot
Match: B8BX20_THAPS (Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 RepID=B8BX20_THAPS)

HSP 1 Score: 182 bits (463), Expect = 1.310e-57
Identity = 101/120 (84.17%), Postives = 113/120 (94.17%), Query Frame = 1 
Query:    1 MAKTPSKKS-AKAPKKA--GDKKKRNK-RTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSK++ AKA KKA  GDKKKR+K R ESYS+YIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+AGE+GKL+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S+
Sbjct:    1 MAKTPSKQAPAKAAKKAATGDKKKRSKKRVESYSTYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIAGEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSA 120
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BLAST of mRNA_S-dermatodea_contig12656.1636.1 vs. uniprot
Match: W7TEP7_9STRA (Histone h2b n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7TEP7_9STRA)

HSP 1 Score: 179 bits (455), Expect = 1.980e-56
Identity = 94/116 (81.03%), Postives = 104/116 (89.66%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGDKKKRNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKKSAKAPKKAG   K+  R ESY SYIYKVLKQVHPDTGISKRG+SI+NSFI D+F+R+A E+GKL RY KK+TLSSRE+QTAVRL LPGELAKHAVSEGTKAVTK+TSS
Sbjct:    1 MAKTPSKKSAKAPKKAGKGTKKKTRVESYGSYIYKVLKQVHPDTGISKRGVSILNSFIGDIFDRLATEAGKLARYTKKSTLSSREIQTAVRLTLPGELAKHAVSEGTKAVTKYTSS 116
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12656.1636.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWI8_ECTSI3.630e-7098.28Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
A0A6U0X3U9_9STRA3.680e-6488.79Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 R... [more]
A0A836CJ22_9STRA5.690e-6389.74Histone H2B n=2 Tax=Tribonema minus TaxID=303371 R... [more]
H2B_OLILU2.380e-6186.21Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=830... [more]
A0A836CJT3_9STRA3.920e-6189.74Histone H2B n=1 Tax=Tribonema minus TaxID=303371 R... [more]
A0A485K2U0_9STRA1.140e-6085.59Histone H2B n=29 Tax=Stramenopiles TaxID=33634 Rep... [more]
B7FWR8_PHATC8.490e-6085.34Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 Re... [more]
A0A6U6DWX5_9STRA8.190e-5986.21Histone H2B n=4 Tax=Odontella aurita TaxID=265563 ... [more]
B8BX20_THAPS1.310e-5784.17Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 Re... [more]
W7TEP7_9STRA1.980e-5681.03Histone h2b n=4 Tax=Monodopsidaceae TaxID=425072 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12656contigS-dermatodea_contig12656:944..1294 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score214.5
Seed ortholog evalue2.6e-53
Seed eggNOG ortholog2880.D7FWI8
KEGG koko:K11252
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006325,GO:0006333,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0031298,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0070013,GO:0071840,GO:0097159,GO:1901363
EggNOG free text desc.protein heterodimerization activity
EggNOG OGsKOG1744@1,KOG1744@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Hectar predicted targeting categoryother localisation
Exons1
Model size351
Cds size351
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924257.0920343-CDS-S-dermatodea_contig12656:943..12941622924257.0920343-CDS-S-dermatodea_contig12656:943..1294Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12656 944..1294 -
1694079130.0774913-CDS-S-dermatodea_contig12656:943..12941694079130.0774913-CDS-S-dermatodea_contig12656:943..1294Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12656 944..1294 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12656.1636.1prot_S-dermatodea_contig12656.1636.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12656 944..1294 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12656.1636.1

>prot_S-dermatodea_contig12656.1636.1 ID=prot_S-dermatodea_contig12656.1636.1|Name=mRNA_S-dermatodea_contig12656.1636.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=117bp
MAKTPSKKSAKAPKKAGDKKKRNKRTESYSSYIYKVLKQVHPDTGISKRG
MSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAK
HAVSEGTKAVTKFTSS*
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mRNA from alignment at S-dermatodea_contig12656:944..1294-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12656.1636.1 ID=mRNA_S-dermatodea_contig12656.1636.1|Name=mRNA_S-dermatodea_contig12656.1636.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=351bp|location=Sequence derived from alignment at S-dermatodea_contig12656:944..1294- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCCAAGACCCCCTCCAAGAAGTCCGCCAAGGCCCCCAAGAAGGCCGG
GGACAAGAAGAAGAGGAACAAGAGGACCGAGTCGTACTCGTCGTACATCT
ATAAGGTGCTCAAGCAGGTGCACCCGGACACTGGTATCTCGAAGCGCGGG
ATGTCCATCATGAACTCGTTCATCAACGACGTGTTCGAGCGTGTGGCGGG
AGAGTCCGGGAAGCTGACCCGGTACAACAAGAAGGCGACCCTGTCCTCTC
GCGAGGTGCAGACGGCGGTGCGTCTGATGCTCCCCGGAGAGCTGGCCAAG
CACGCTGTGTCCGAGGGCACCAAGGCCGTCACCAAGTTCACCTCCTCCTA
G
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Coding sequence (CDS) from alignment at S-dermatodea_contig12656:944..1294-

>mRNA_S-dermatodea_contig12656.1636.1 ID=mRNA_S-dermatodea_contig12656.1636.1|Name=mRNA_S-dermatodea_contig12656.1636.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at S-dermatodea_contig12656:944..1294- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCCAAGACCCCCTCCAAGAAGTCCGCCAAGGCCCCCAAGAAGGCCGG
GGACAAGAAGAAGAGGAACAAGAGGACCGAGTCGTACTCGTCGTACATCT
ATAAGGTGCTCAAGCAGGTGCACCCGGACACTGGTATCTCGAAGCGCGGG
ATGTCCATCATGAACTCGTTCATCAACGACGTGTTCGAGCGTGTGGCGGG
AGAGTCCGGGAAGCTGACCCGGTACAACAAGAAGGCGACCCTGTCCTCTC
GCGAGGTGCAGACGGCGGTGCGTCTGATGCTCCCCGGAGAGCTGGCCAAG
CACGCTGTGTCCGAGGGCACCAAGGCCGTCACCAAGTTCACCTCCTCCTA
GATGGCCAAGACCCCCTCCAAGAAGTCCGCCAAGGCCCCCAAGAAGGCCG
GGGACAAGAAGAAGAGGAACAAGAGGACCGAGTCGTACTCGTCGTACATC
TATAAGGTGCTCAAGCAGGTGCACCCGGACACTGGTATCTCGAAGCGCGG
GATGTCCATCATGAACTCGTTCATCAACGACGTGTTCGAGCGTGTGGCGG
GAGAGTCCGGGAAGCTGACCCGGTACAACAAGAAGGCGACCCTGTCCTCT
CGCGAGGTGCAGACGGCGGTGCGTCTGATGCTCCCCGGAGAGCTGGCCAA
GCACGCTGTGTCCGAGGGCACCAAGGCCGTCACCAAGTTCACCTCCTCCT
AG
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