mRNA_S-dermatodea_contig12643.1631.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12643.1631.1
Unique NamemRNA_S-dermatodea_contig12643.1631.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig12643.1631.1 vs. uniprot
Match: A0A1V0SKG2_9VIRU (HNH endonuclease n=1 Tax=Klosneuvirus KNV1 TaxID=1977640 RepID=A0A1V0SKG2_9VIRU)

HSP 1 Score: 188 bits (477), Expect = 3.800e-52
Identity = 117/337 (34.72%), Postives = 176/337 (52.23%), Query Frame = 1
Query:   94 LSNSCSNHNCINPSHL--EIVPKSLDDVWKRMLEKTRREN--ECLLWTGSTNK--GYGQTTVYSKIMSAHRASYLIKTKGEPIPR-EIDGMTAHVRHLCGKSLCVNPDHLEIGTIV-SNHQDKAVHGTSMVGERSHLAKITEEKATQIKTSKLCEEEDGFESQTERAERFGVSLVTVRNIDSGKTWCHVKDRFGNTTNNDRLRKRKRETYSANQKQVWGDKDFEAAGEILYKRISKSTTDKRCDIPGDCWNFT-GCTSHGYGQIQIMGKHRGAHVMSCEIATKRAIEPREVTRHLCGNKLCIAPHHLQFGDPSENGLDCLKHGSKACKLDEEKVRNI 1077
            +  +C    CINP HL  + +  + D  W+R+L K +R+    CLLW GS  K  GYG  +   +    H ASY IK K   + +   +    +VRH+C    C  P HLE+GT+  +N++DK   GT + G ++  A I EE A +IK SK   + + +++  +RA+ F VS   V  IDSGK+W  + D  GNT +   +RK ++      +   W  + FE A + +     K       ++ G CW +  G    GYG++ + GK + AH++SCEI         +VTRHLC NK C+ P HL+FG  S+N +D +K G+      EE V+ I
Sbjct:   80 VKRNCVTKRCINPEHLISQKLEMNFDIAWQRLLSKGKRDTTTSCLLWQGSIEKHSGYGIVSFNGRSDRVHVASYKIKVKKIVLEKFNNNNELLYVRHMCDNKHCYEPTHLELGTVSQNNYEDKIKSGTILRGSKNVWATINEETARKIKLSKYPMDHELYKNVPDRAKEFNVSESIVYAIDSGKSWGFIPDANGNTID---MRKNRKII----KIDTWTPEMFEVAKKYIESNYIKD------EVTG-CWIWKLGKNKAGYGKLTLYGKRKCAHIVSCEIKYGYHKPKDKVTRHLCDNKACVNPDHLEFGTQSQNNIDTIKSGNNKNYTTEEIVKEI 402          
BLAST of mRNA_S-dermatodea_contig12643.1631.1 vs. uniprot
Match: A0A3G5AE31_9VIRU (Putative homing endonuclease n=1 Tax=Hyperionvirus sp. TaxID=2487770 RepID=A0A3G5AE31_9VIRU)

HSP 1 Score: 108 bits (269), Expect = 6.440e-23
Identity = 100/347 (28.82%), Postives = 151/347 (43.52%), Query Frame = 1
Query:    7 RTIDGKCIGIR-----VQRYIWNL---THPDIFKGQTLSNSCSNHNCINPSHLEIVPKSLDDVWK----RMLEKTRRENECLLWTGSTNK-GYGQTTVYSKIMSAHRASYLIKTKGEPIPREIDGMTAHVRHLCGKSLCVNPDHLEIGTIVSNHQDKAVHGTSMVGERSHLAKITEEKATQIKTSKLCEEEDGFESQTER-AERF--GVSLVTVRNIDSGKTWCHVKDRFGNTTNNDRLRKRKRETYSANQKQVWGDKDFEAAGEILYKRISKSTTDKRCDIPGDCWNFTGCTS-HGYGQIQIMGKHRGAHVMSCEIATKRAIEPREV-TRHLCGNKLCIAPHHLQF 993
            + ID + + I+      Q ++W     T   +F       SC+   CI+P H  +      DV+K    R++E +++E EC L+TG   K GYG T +  +I  AH  +  I   G  IP +       VRH C    C    HLE+GT   N  DK   GT++ G     A +TEE   +I  SK   E D   ++T+  +E+F   +S  +V  ID G TW H+             +K  ++       Q + DK  EA  + +   IS         I  +CW + G    HGYGQ + +    G+      +AT +   P ++  RH C NK C +   +Q 
Sbjct:   38 KIIDNQPVRIKFRGKLAQPHLWQKIISTKTWVFNANRYKKSCTEKFCISPDHF-LSRDDPTDVYKLAYIRLMENSKQEGECRLFTGFCTKYGYGNTNLKKRITYAHILAMEIHLNGT-IPDD-----KFVRHKCKNKNCFAIGHLELGTHAENMSDKIRDGTNLAGVDHPNAILTEEMVLEIFNSK---ETDTVPNRTKFFSEKFKIDISSASVYKIDDGSTWSHITKI---------TKKPPKKLVKPELNQEFIDKHHEAMKDKVKNNIS---------INEECWLWKGAKDIHGYGQTRFLRIMFGSIHRFSLMATSQKFIPADLQVRHKCANKHCWSVKIVQL 356          
BLAST of mRNA_S-dermatodea_contig12643.1631.1 vs. uniprot
Match: A0A4R8ER33_9ENTR (HNH endonuclease n=1 Tax=Buttiauxella sp. BIGb0552 TaxID=2485120 RepID=A0A4R8ER33_9ENTR)

HSP 1 Score: 85.9 bits (211), Expect = 1.570e-16
Identity = 57/163 (34.97%), Postives = 82/163 (50.31%), Query Frame = 1
Query:  154 KSLDDVWKRMLEKTRRENECLLWTGST-NKGYGQTTVYSKIMSAHRASYLIKTKGEPIPREIDGMTAHVRHLCGKSLCVNPDHLEIGTIVSNHQDKAVHGTSMVGERSHLAKITEEKATQIKTSKLCEEEDGFESQTERAERFGVSLVTVRNIDSGKTWCHVK 639
            KSL D   R+L    +  EC +W  S  + GYGQ  +  K + A+RASY++  KGE      DGM   +RH C   LC+NP+HL +G+   N QD         GER+   K++E     IK SKL        S ++ A++FG+S      + +G  W  +K
Sbjct:   12 KSLKD---RLLAGCVKTGECWVWNKSVASSGYGQIRLNYKNLRANRASYMV-FKGEIA----DGMV--IRHTCDNKLCINPEHLILGSCKQNSQDMVERDRQAKGERNGRCKLSESDVQAIKDSKL--------SYSQLAKQFGISKGHAHRVKNGVAWSFLK 156          
BLAST of mRNA_S-dermatodea_contig12643.1631.1 vs. uniprot
Match: UPI0013777149 (HNH endonuclease n=1 Tax=Microvirga arsenatis TaxID=2692265 RepID=UPI0013777149)

HSP 1 Score: 80.9 bits (198), Expect = 9.860e-15
Identity = 57/163 (34.97%), Postives = 79/163 (48.47%), Query Frame = 1
Query:  169 VWKRMLEKTRRENE---CLLWTGSTNKGYGQTTVYSKIMSAHRASYLIKTKGEPIPREIDGMTAHVRHLCGKSLCVNPDHLEIGTIVSNHQDKAVHGT-SMVGERSHLAKITEEKATQIKTSKLCEEEDGFESQTERA--ERFGVSLVTVRNIDSGKTWCHVK 639
            +W R   K  R +    C LWTGST KGYG+       ++AHR SY++  KG  + R        V H C   LCVNPDHL +GT + N QD    G     G RS L   TE+    I+           +++T +A    +GV+  T+  I +G+ W H+K
Sbjct:    8 LWPRFQAKIDRSSSPCGCWLWTGSTAKGYGKIRYNGVYVTAHRVSYMLY-KGPILDR------LFVCHTCDTRLCVNPDHLFLGTNLENQQDMWSKGRYGFGGGRSVL---TEDDVRAIRA----------DTRTHKAIATAYGVASSTISMIKTGRNWAHIK 150          
BLAST of mRNA_S-dermatodea_contig12643.1631.1 vs. uniprot
Match: A0A8F5A6F1_9CAUD (HNH endonuclease n=1 Tax=Salmonella phage vB_SalP_ABTNLsp11242 TaxID=2838911 RepID=A0A8F5A6F1_9CAUD)

HSP 1 Score: 80.5 bits (197), Expect = 1.430e-14
Identity = 55/163 (33.74%), Postives = 83/163 (50.92%), Query Frame = 1
Query:  154 KSLDDVWKRMLEKTRRENECLLWTGST-NKGYGQTTVYSKIMSAHRASYLIKTKGEPIPREIDGMTAHVRHLCGKSLCVNPDHLEIGTIVSNHQDKAVHGTSMVGERSHLAKITEEKATQIKTSKLCEEEDGFESQTERAERFGVSLVTVRNIDSGKTWCHVK 639
            KSL++   R+L    +   C +W  S  + GYGQ  +  K + A+RAS+++  KGE IP   DGM   +RH C   LC+NPDHL +G+   N +D         G ++   K++E+   +IK S L        S ++ AE+FG+S      I  G  W  +K
Sbjct:   12 KSLEE---RLLAGCIKTEGCWIWRRSVASSGYGQIRLNYKNLRANRASFMV-FKGE-IP---DGMV--IRHTCDNKLCINPDHLILGSCKQNSEDMVSRDRQAKGIKNGRCKLSEDTVREIKKSTL--------SCSKTAEKFGISKSHAHKIMKGAAWSFIK 156          
BLAST of mRNA_S-dermatodea_contig12643.1631.1 vs. uniprot
Match: A0A4P7C045_9GAMM (HNH endonuclease n=1 Tax=Nitrosococcus wardiae TaxID=1814290 RepID=A0A4P7C045_9GAMM)

HSP 1 Score: 79.7 bits (195), Expect = 3.840e-14
Identity = 60/157 (38.22%), Postives = 79/157 (50.32%), Query Frame = 1
Query:  178 RMLEKTRR-ENECLLWTGSTNK-GYGQTTVYSKIMSAHRASYLIKTKGEPIPREIDGMTAHVRHLCGKSLCVNPDHLEIGTIVSNHQD--KAVHGTSMVGERSHLAKITEEKATQIKTSKLCEEEDGFESQTERAERFGVSLVTVRNIDSGKTWCHV 636
            R LEKT R E  CL+W G+ NK GYG  +V  K  +A R +Y +     PIP   DGM   V H C   LC+ P+HL +GT   N +D  K        GER+  AK+ E     I++S       G       A ++GVS  T++ I SGK W H+
Sbjct:   30 RFLEKTIRIETGCLMWIGAKNKNGYGCISVEGKTKTASRLAYELFIG--PIP---DGMI--VCHRCDFPLCIEPNHLFLGTDTDNRRDCKKKGRANGARGERNVKAKLKEHDVIVIRSSSA---RSGV-----LANKYGVSRSTIKRIRSGKIWRHI 171          
BLAST of mRNA_S-dermatodea_contig12643.1631.1 vs. uniprot
Match: UPI00046F608A (HNH endonuclease n=1 Tax=Paenibacillus ehimensis TaxID=79264 RepID=UPI00046F608A)

HSP 1 Score: 78.6 bits (192), Expect = 5.980e-14
Identity = 59/155 (38.06%), Postives = 77/155 (49.68%), Query Frame = 1
Query:  178 RMLEKTRRENECLLWTGSTN-KGYGQTTVYSKIMSAHRASYLIKTKGEPIPREIDGMTAHVRHLCGKSLCVNPDHLEIGTIVSNHQDKAVHGTSMVGERSHLAKITEEKATQIKTSKLCEEEDGFESQTERAERFGVSLVTVRNIDSGKTWCHVK 639
            R      +   C +W GS N KGYGQ  V      AHR SY +  KG  IP+   GM   V H C   LCVNPDHL +GT   N  D        VGER   +K+T+EK  +I++ +    + G     + A RFGVS   V++I   + W HV+
Sbjct:    6 RFTSNVDKSGACWVWKGSINGKGYGQLNVNGINEMAHRYSYQMH-KGT-IPK---GM--FVMHSCDNRLCVNPDHLIVGTHRDNMDDMINKKRQAVGERVKSSKLTKEKVKEIRSLR----KRGL-MYKDIAVRFGVSAYHVKDICRFRVWKHVE 148          
BLAST of mRNA_S-dermatodea_contig12643.1631.1 vs. uniprot
Match: A0A352V7A0_9SPIR (HNH endonuclease n=1 Tax=Spirochaetia bacterium TaxID=2053615 RepID=A0A352V7A0_9SPIR)

HSP 1 Score: 78.2 bits (191), Expect = 1.250e-13
Identity = 57/177 (32.20%), Postives = 87/177 (49.15%), Query Frame = 1
Query:  142 EIVPKSLDDVWKRMLE----KTRRENECLLWTGSTNKGYGQTTVYSKIMSAHRASYLIKTKGEPIPREIDGMTAHVRHLCGKSLCVNPDHLEIGTIVSNHQDKAVHGT---SMVGERSHLAKITEEKATQIKTSKLCEEEDGFESQTERAERFGVSLVTVRNIDSGKTWCHVKDRFG 651
            E  P+ +++  +R+ E    +  +   C  WT ST+KGYG   +  K   AHR  ++I T GE      DG+   V H C   LC+NPDHL +GT + N  D    G       GE++  AK+T+ +   IK        +G  ++T  +E+F +S   V+ I   KTW H+ +  G
Sbjct:    3 EFTPEWIEEARERIREHFQYEINKNTGCWEWTKSTSKGYGHLGIRGKFYQAHRLMWII-TNGEIK----DGL--FVCHKCDNRLCINPDHLFLGTNLDNINDAIEKGKWQHQPKGEKNGNAKLTKNQVLNIKHLVS----NGIPTKT-ISEKFNISQRHVQYIAKNKTWKHLINGVG 167          
BLAST of mRNA_S-dermatodea_contig12643.1631.1 vs. uniprot
Match: A0A6M3KWD7_9ZZZZ (Putative homing endonuclease n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6M3KWD7_9ZZZZ)

HSP 1 Score: 74.3 bits (181), Expect = 2.870e-12
Identity = 41/93 (44.09%), Postives = 53/93 (56.99%), Query Frame = 1
Query:  172 WKRMLEKTRRENECLLWTGSTNKGYGQTTVYSKIMSAHRASYLIKTKGEPIPREIDGMTAHVRHLCGKSLCVNPDHLEIGTIVSNHQDKAVHG 450
            WKR+  KT   N+C LW G T++GYG T   S  +S HR ++  K     IP+ +    A VRH CG  LCVNP+HL+IG    N +D A  G
Sbjct:   26 WKRVDIKT--PNDCWLWKGPTDRGYGVTCDGSNRISTHRMAW--KLINGDIPKFVKTRKALVRHKCGNRLCVNPNHLDIGNYSDNGKDAAREG 114          
BLAST of mRNA_S-dermatodea_contig12643.1631.1 vs. uniprot
Match: A0A6M1YN17_9BACT (HNHc domain-containing protein n=1 Tax=Chlamydiae bacterium TaxID=2081524 RepID=A0A6M1YN17_9BACT)

HSP 1 Score: 74.3 bits (181), Expect = 6.850e-12
Identity = 50/158 (31.65%), Postives = 81/158 (51.27%), Query Frame = 1
Query:  154 KSLDDVWKRMLEKTRRENECLLWTGSTNKGYGQTTVYSKIMSAHRASYLIKTKGEPIPREIDGMTAHVRHLCGKSLCVNPDHLEIGTIVSNHQDKAVHGTSMVGERSHLAKITEEKATQIKTSKLCEEEDGFESQTERAERFGVSLVTVRNIDSGKTW 627
            +  DDV+++    T+++ ECL+WTG+T+KGY +  +  K+ SAHR  +  +  GEPIP   +G    V H C    CVN  HL + +   N +D    G    G R+  AK +E+    I+       E   +S ++ A+  G    T+R I + +T+
Sbjct:   64 RDFDDVFEK---NTKKQGECLIWTGTTSKGYPKFKLQGKVYSAHRVVWE-QVFGEPIP---EGKC--VCHHCDNRACVNVGHLFVASRAQNSKDMIRKGRQAKGSRNGSAKFSEKDIISIRN------EPPTKSISDIAKERGAHNSTIRRILNKETY 206          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12643.1631.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1V0SKG2_9VIRU3.800e-5234.72HNH endonuclease n=1 Tax=Klosneuvirus KNV1 TaxID=1... [more]
A0A3G5AE31_9VIRU6.440e-2328.82Putative homing endonuclease n=1 Tax=Hyperionvirus... [more]
A0A4R8ER33_9ENTR1.570e-1634.97HNH endonuclease n=1 Tax=Buttiauxella sp. BIGb0552... [more]
UPI00137771499.860e-1534.97HNH endonuclease n=1 Tax=Microvirga arsenatis TaxI... [more]
A0A8F5A6F1_9CAUD1.430e-1433.74HNH endonuclease n=1 Tax=Salmonella phage vB_SalP_... [more]
A0A4P7C045_9GAMM3.840e-1438.22HNH endonuclease n=1 Tax=Nitrosococcus wardiae Tax... [more]
UPI00046F608A5.980e-1438.06HNH endonuclease n=1 Tax=Paenibacillus ehimensis T... [more]
A0A352V7A0_9SPIR1.250e-1332.20HNH endonuclease n=1 Tax=Spirochaetia bacterium Ta... [more]
A0A6M3KWD7_9ZZZZ2.870e-1244.09Putative homing endonuclease n=1 Tax=viral metagen... [more]
A0A6M1YN17_9BACT6.850e-1231.65HNHc domain-containing protein n=1 Tax=Chlamydiae ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12643contigS-dermatodea_contig12643:5612..6691 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViruses
Seed ortholog score86.3
Seed ortholog evalue3.2e-14
Seed eggNOG ortholog1455075.W6PP19_9CAUD
EggNOG free text desc.HNH endonuclease
EggNOG OGs4QAIU@10239,4QNBQ@10744,4QPDE@28883,4QUQC@35237
COG Functional cat.S
Best tax levelPodoviridae
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size1080
Cds size1080
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924256.6275342-CDS-S-dermatodea_contig12643:5611..66911622924256.6275342-CDS-S-dermatodea_contig12643:5611..6691Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12643 5612..6691 -
1694079129.7523022-CDS-S-dermatodea_contig12643:5611..66911694079129.7523022-CDS-S-dermatodea_contig12643:5611..6691Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12643 5612..6691 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12643.1631.1prot_S-dermatodea_contig12643.1631.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12643 5612..6691 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12643.1631.1

>prot_S-dermatodea_contig12643.1631.1 ID=prot_S-dermatodea_contig12643.1631.1|Name=mRNA_S-dermatodea_contig12643.1631.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=360bp
MYRTIDGKCIGIRVQRYIWNLTHPDIFKGQTLSNSCSNHNCINPSHLEIV
PKSLDDVWKRMLEKTRRENECLLWTGSTNKGYGQTTVYSKIMSAHRASYL
IKTKGEPIPREIDGMTAHVRHLCGKSLCVNPDHLEIGTIVSNHQDKAVHG
TSMVGERSHLAKITEEKATQIKTSKLCEEEDGFESQTERAERFGVSLVTV
RNIDSGKTWCHVKDRFGNTTNNDRLRKRKRETYSANQKQVWGDKDFEAAG
EILYKRISKSTTDKRCDIPGDCWNFTGCTSHGYGQIQIMGKHRGAHVMSC
EIATKRAIEPREVTRHLCGNKLCIAPHHLQFGDPSENGLDCLKHGSKACK
LDEEKVRNI*
back to top

mRNA from alignment at S-dermatodea_contig12643:5612..6691-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12643.1631.1 ID=mRNA_S-dermatodea_contig12643.1631.1|Name=mRNA_S-dermatodea_contig12643.1631.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1080bp|location=Sequence derived from alignment at S-dermatodea_contig12643:5612..6691- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTATAGAACGATCGATGGTAAGTGCATTGGTATACGAGTGCAGAGATA TATCTGGAACCTGACACACCCCGACATATTCAAGGGACAAACACTATCAA ATTCGTGTTCAAACCACAACTGCATCAATCCCTCCCACCTAGAAATCGTG CCCAAATCGTTGGATGACGTCTGGAAAAGAATGCTGGAGAAGACACGTCG TGAAAATGAATGTTTACTGTGGACAGGGTCTACGAATAAAGGGTACGGTC AAACTACTGTGTACAGTAAGATTATGTCTGCCCATAGAGCATCCTACTTG ATCAAAACAAAGGGTGAGCCGATCCCACGCGAGATCGATGGGATGACCGC ACATGTACGACACTTGTGTGGCAAGTCGCTTTGTGTCAACCCGGATCACC TCGAGATTGGAACCATCGTTTCTAATCACCAAGACAAGGCTGTGCATGGA ACGAGTATGGTCGGTGAGCGTAGTCACTTGGCAAAAATTACAGAAGAGAA GGCAACTCAAATCAAGACATCGAAACTATGTGAAGAAGAAGATGGTTTTG AATCACAGACCGAGAGAGCTGAGAGGTTCGGTGTCTCTTTGGTCACCGTA CGAAACATTGATAGCGGTAAGACATGGTGTCACGTCAAGGACAGATTTGG GAACACTACCAACAATGATCGTCTACGGAAGAGAAAACGTGAGACTTATT CCGCTAACCAAAAACAAGTTTGGGGCGACAAAGATTTCGAGGCTGCCGGT GAAATACTGTACAAGCGAATATCCAAGTCAACAACAGACAAGAGGTGCGA TATTCCAGGAGACTGCTGGAACTTCACCGGATGCACTTCGCACGGATACG GCCAAATTCAGATTATGGGGAAGCACAGGGGCGCGCATGTCATGAGTTGC GAAATCGCTACAAAGAGGGCAATTGAGCCAAGGGAGGTAACGAGGCATCT CTGTGGCAATAAGTTGTGCATCGCCCCTCATCATTTGCAGTTTGGCGATC CCTCGGAAAACGGCTTGGACTGTCTGAAACACGGGTCAAAAGCGTGTAAG TTGGATGAAGAAAAAGTTAGGAATATTTGA
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig12643:5612..6691-

>mRNA_S-dermatodea_contig12643.1631.1 ID=mRNA_S-dermatodea_contig12643.1631.1|Name=mRNA_S-dermatodea_contig12643.1631.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2160bp|location=Sequence derived from alignment at S-dermatodea_contig12643:5612..6691- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTATAGAACGATCGATGGTAAGTGCATTGGTATACGAGTGCAGAGATA
TATCTGGAACCTGACACACCCCGACATATTCAAGGGACAAACACTATCAA
ATTCGTGTTCAAACCACAACTGCATCAATCCCTCCCACCTAGAAATCGTG
CCCAAATCGTTGGATGACGTCTGGAAAAGAATGCTGGAGAAGACACGTCG
TGAAAATGAATGTTTACTGTGGACAGGGTCTACGAATAAAGGGTACGGTC
AAACTACTGTGTACAGTAAGATTATGTCTGCCCATAGAGCATCCTACTTG
ATCAAAACAAAGGGTGAGCCGATCCCACGCGAGATCGATGGGATGACCGC
ACATGTACGACACTTGTGTGGCAAGTCGCTTTGTGTCAACCCGGATCACC
TCGAGATTGGAACCATCGTTTCTAATCACCAAGACAAGGCTGTGCATGGA
ACGAGTATGGTCGGTGAGCGTAGTCACTTGGCAAAAATTACAGAAGAGAA
GGCAACTCAAATCAAGACATCGAAACTATGTGAAGAAGAAGATGGTTTTG
AATCACAGACCGAGAGAGCTGAGAGGTTCGGTGTCTCTTTGGTCACCGTA
CGAAACATTGATAGCGGTAAGACATGGTGTCACGTCAAGGACAGATTTGG
GAACACTACCAACAATGATCGTCTACGGAAGAGAAAACGTGAGACTTATT
CCGCTAACCAAAAACAAGTTTGGGGCGACAAAGATTTCGAGGCTGCCGGT
GAAATACTGTACAAGCGAATATCCAAGTCAACAACAGACAAGAGGTGCGA
TATTCCAGGAGACTGCTGGAACTTCACCGGATGCACTTCGCACGGATACG
GCCAAATTCAGATTATGGGGAAGCACAGGGGCGCGCATGTCATGAGTTGC
GAAATCGCTACAAAGAGGGCAATTGAGCCAAGGGAGGTAACGAGGCATCT
CTGTGGCAATAAGTTGTGCATCGCCCCTCATCATTTGCAGTTTGGCGATC
CCTCGGAAAACGGCTTGGACTGTCTGAAACACGGGTCAAAAGCGTGTAAG
TTGGATGAAGAAAAAGTTAGGAATATTTGAATGTATAGAACGATCGATGG
TAAGTGCATTGGTATACGAGTGCAGAGATATATCTGGAACCTGACACACC
CCGACATATTCAAGGGACAAACACTATCAAATTCGTGTTCAAACCACAAC
TGCATCAATCCCTCCCACCTAGAAATCGTGCCCAAATCGTTGGATGACGT
CTGGAAAAGAATGCTGGAGAAGACACGTCGTGAAAATGAATGTTTACTGT
GGACAGGGTCTACGAATAAAGGGTACGGTCAAACTACTGTGTACAGTAAG
ATTATGTCTGCCCATAGAGCATCCTACTTGATCAAAACAAAGGGTGAGCC
GATCCCACGCGAGATCGATGGGATGACCGCACATGTACGACACTTGTGTG
GCAAGTCGCTTTGTGTCAACCCGGATCACCTCGAGATTGGAACCATCGTT
TCTAATCACCAAGACAAGGCTGTGCATGGAACGAGTATGGTCGGTGAGCG
TAGTCACTTGGCAAAAATTACAGAAGAGAAGGCAACTCAAATCAAGACAT
CGAAACTATGTGAAGAAGAAGATGGTTTTGAATCACAGACCGAGAGAGCT
GAGAGGTTCGGTGTCTCTTTGGTCACCGTACGAAACATTGATAGCGGTAA
GACATGGTGTCACGTCAAGGACAGATTTGGGAACACTACCAACAATGATC
GTCTACGGAAGAGAAAACGTGAGACTTATTCCGCTAACCAAAAACAAGTT
TGGGGCGACAAAGATTTCGAGGCTGCCGGTGAAATACTGTACAAGCGAAT
ATCCAAGTCAACAACAGACAAGAGGTGCGATATTCCAGGAGACTGCTGGA
ACTTCACCGGATGCACTTCGCACGGATACGGCCAAATTCAGATTATGGGG
AAGCACAGGGGCGCGCATGTCATGAGTTGCGAAATCGCTACAAAGAGGGC
AATTGAGCCAAGGGAGGTAACGAGGCATCTCTGTGGCAATAAGTTGTGCA
TCGCCCCTCATCATTTGCAGTTTGGCGATCCCTCGGAAAACGGCTTGGAC
TGTCTGAAACACGGGTCAAAAGCGTGTAAGTTGGATGAAGAAAAAGTTAG
GAATATTTGA
back to top