mRNA_S-dermatodea_contig12643.1630.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12643.1630.1
Unique NamemRNA_S-dermatodea_contig12643.1630.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12643.1630.1 vs. uniprot
Match: A0A177AWN5_9BILA (PHD-type domain-containing protein n=1 Tax=Intoshia linei TaxID=1819745 RepID=A0A177AWN5_9BILA)

HSP 1 Score: 55.8 bits (133), Expect = 5.810e-8
Identity = 20/32 (62.50%), Postives = 24/32 (75.00%), Query Frame = 1 
Query:    1 LLCDGCGDAYHMYCLNPVLEEVPDDEWLCLPC 96
            L CDGC   YHMYCLNP +E  PD++W+CL C
Sbjct:   46 LFCDGCDRGYHMYCLNPPMENPPDEKWICLLC 77
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BLAST of mRNA_S-dermatodea_contig12643.1630.1 vs. uniprot
Match: A4IH62_XENTR (RING-type E3 ubiquitin transferase n=2 Tax=Xenopus tropicalis TaxID=8364 RepID=A4IH62_XENTR)

HSP 1 Score: 56.6 bits (135), Expect = 4.940e-7
Identity = 29/55 (52.73%), Postives = 37/55 (67.27%), Query Frame = 1 
Query:    1 LLCDGCGDAYHMYCLNPVLEEVPDDE-WLCLPCMNADAEEVEETTASGKEYRRKA 162
            LLCD C  AYH+YCLNP LE++P+DE W C  C N DA EV +     K+ ++KA
Sbjct:  356 LLCDECNMAYHIYCLNPPLEKIPEDEDWYCPSCKN-DATEVVKAGEKLKQSKKKA 409
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BLAST of mRNA_S-dermatodea_contig12643.1630.1 vs. uniprot
Match: A0A1L8HP25_XENLA (RING-type E3 ubiquitin transferase n=1 Tax=Xenopus laevis TaxID=8355 RepID=A0A1L8HP25_XENLA)

HSP 1 Score: 56.6 bits (135), Expect = 5.090e-7
Identity = 29/55 (52.73%), Postives = 37/55 (67.27%), Query Frame = 1 
Query:    1 LLCDGCGDAYHMYCLNPVLEEVPDDE-WLCLPCMNADAEEVEETTASGKEYRRKA 162
            LLCD C  AYH+YCLNP LE++P+DE W C  C N DA EV +     K+ ++KA
Sbjct:  357 LLCDECNMAYHIYCLNPPLEKIPEDEDWYCPSCKN-DATEVVKAGEKLKQSKKKA 410
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BLAST of mRNA_S-dermatodea_contig12643.1630.1 vs. uniprot
Match: F7ESL3_XENTR (RING-type E3 ubiquitin transferase n=5 Tax=Xenopus TaxID=8353 RepID=F7ESL3_XENTR)

HSP 1 Score: 56.6 bits (135), Expect = 5.090e-7
Identity = 29/55 (52.73%), Postives = 37/55 (67.27%), Query Frame = 1 
Query:    1 LLCDGCGDAYHMYCLNPVLEEVPDDE-WLCLPCMNADAEEVEETTASGKEYRRKA 162
            LLCD C  AYH+YCLNP LE++P+DE W C  C N DA EV +     K+ ++KA
Sbjct:  356 LLCDECNMAYHIYCLNPPLEKIPEDEDWYCPSCKN-DATEVVKAGEKLKQSKKKA 409
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BLAST of mRNA_S-dermatodea_contig12643.1630.1 vs. uniprot
Match: UPI0018853C04 (LOW QUALITY PROTEIN: lysine-specific demethylase 5A-like n=1 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI0018853C04)

HSP 1 Score: 56.6 bits (135), Expect = 5.260e-7
Identity = 22/42 (52.38%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:    1 LLCDGCGDAYHMYCLNPVLEEVPDDEWLCLPCMNADAEEVEE 126
            LLCDGC D+YH +CLNP L E+P  +W C  C+ A+ E+ +E
Sbjct:  282 LLCDGCDDSYHTFCLNPPLVEIPKGDWRCPQCVAAEVEKPQE 323
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BLAST of mRNA_S-dermatodea_contig12643.1630.1 vs. uniprot
Match: UPI001C9015D2 (lysine-specific demethylase 5A-like n=1 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=UPI001C9015D2)

HSP 1 Score: 56.2 bits (134), Expect = 7.170e-7
Identity = 22/42 (52.38%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:    1 LLCDGCGDAYHMYCLNPVLEEVPDDEWLCLPCMNADAEEVEE 126
            LLCDGC D+YH +CLNP L E+P  +W C  C+ A+ E+ +E
Sbjct:  285 LLCDGCDDSYHTFCLNPPLIEIPKGDWRCPQCVAAEVEKPQE 326
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BLAST of mRNA_S-dermatodea_contig12643.1630.1 vs. uniprot
Match: A0A2T7DDG2_9POAL (PHD-type domain-containing protein n=3 Tax=Panicum TaxID=4539 RepID=A0A2T7DDG2_9POAL)

HSP 1 Score: 55.1 bits (131), Expect = 7.310e-7
Identity = 22/41 (53.66%), Postives = 27/41 (65.85%), Query Frame = 1 
Query:    1 LLCDGCGDAYHMYCLNPVLEEVPDDEWLCLPCMNADAEEVE 123
            ++CDGC +AYH+YCL+P L  VP   W C  C  A A EVE
Sbjct:   85 IMCDGCDEAYHLYCLSPPLTSVPKGHWYCQFCTEAKAREVE 125
[Close]
BLAST of mRNA_S-dermatodea_contig12643.1630.1 vs. uniprot
Match: A0A2T8IJ75_9POAL (PHD-type domain-containing protein n=2 Tax=Panicum hallii TaxID=206008 RepID=A0A2T8IJ75_9POAL)

HSP 1 Score: 55.5 bits (132), Expect = 8.410e-7
Identity = 22/41 (53.66%), Postives = 27/41 (65.85%), Query Frame = 1 
Query:    1 LLCDGCGDAYHMYCLNPVLEEVPDDEWLCLPCMNADAEEVE 123
            ++CDGC +AYH+YCL+P L  VP   W C  C  A A EVE
Sbjct:  138 IMCDGCDEAYHLYCLSPPLTSVPKGHWYCQLCTEAKAREVE 178
[Close]
BLAST of mRNA_S-dermatodea_contig12643.1630.1 vs. uniprot
Match: G1NTF4_MYOLU (RING-type E3 ubiquitin transferase n=17 Tax=Vespertilionidae TaxID=9431 RepID=G1NTF4_MYOLU)

HSP 1 Score: 55.8 bits (133), Expect = 9.430e-7
Identity = 22/40 (55.00%), Postives = 28/40 (70.00%), Query Frame = 1 
Query:    1 LLCDGCGDAYHMYCLNPVLEEVPDDEWLCLPCMNADAEEV 120
            LLCD C  AYH+YCLNP L++VP++EW C  C    +E V
Sbjct:  338 LLCDECNQAYHIYCLNPPLDKVPEEEWYCPSCKTDSSEVV 377
[Close]
BLAST of mRNA_S-dermatodea_contig12643.1630.1 vs. uniprot
Match: UPI001B7E274A (E3 ubiquitin-protein ligase UHRF1-like isoform X1 n=2 Tax=Carcharodon carcharias TaxID=13397 RepID=UPI001B7E274A)

HSP 1 Score: 55.8 bits (133), Expect = 9.480e-7
Identity = 29/55 (52.73%), Postives = 34/55 (61.82%), Query Frame = 1 
Query:    1 LLCDGCGDAYHMYCLNPVLEEVPDDE-WLCLPCMNADAEEVEETTASGKEYRRKA 162
            LLCD C  AYH+YCLNP L ++PDDE W C  C N D  EV       KE ++KA
Sbjct:  377 LLCDECNMAYHIYCLNPPLSKIPDDEDWYCPSCKN-DTSEVVRAGEKLKESKKKA 430
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12643.1630.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A177AWN5_9BILA5.810e-862.50PHD-type domain-containing protein n=1 Tax=Intoshi... [more]
A4IH62_XENTR4.940e-752.73RING-type E3 ubiquitin transferase n=2 Tax=Xenopus... [more]
A0A1L8HP25_XENLA5.090e-752.73RING-type E3 ubiquitin transferase n=1 Tax=Xenopus... [more]
F7ESL3_XENTR5.090e-752.73RING-type E3 ubiquitin transferase n=5 Tax=Xenopus... [more]
UPI0018853C045.260e-752.38LOW QUALITY PROTEIN: lysine-specific demethylase 5... [more]
UPI001C9015D27.170e-752.38lysine-specific demethylase 5A-like n=1 Tax=Amphib... [more]
A0A2T7DDG2_9POAL7.310e-753.66PHD-type domain-containing protein n=3 Tax=Panicum... [more]
A0A2T8IJ75_9POAL8.410e-753.66PHD-type domain-containing protein n=2 Tax=Panicum... [more]
G1NTF4_MYOLU9.430e-755.00RING-type E3 ubiquitin transferase n=17 Tax=Vesper... [more]
UPI001B7E274A9.480e-752.73E3 ubiquitin-protein ligase UHRF1-like isoform X1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12643contigS-dermatodea_contig12643:2610..3297 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score62.0
Seed ortholog evalue2e-07
Seed eggNOG ortholog176946.XP_007427322.1
Preferred namePHRF1
KEGG koko:K17586
GOsGO:0003008,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006351,GO:0006366,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007600,GO:0007605,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0018130,GO:0019438,GO:0019899,GO:0019904,GO:0032420,GO:0032421,GO:0032426,GO:0032501,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0042995,GO:0043005,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044463,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0050877,GO:0050954,GO:0070063,GO:0071704,GO:0090304,GO:0097458,GO:0097659,GO:0098858,GO:0098862,GO:0120025,GO:0120038,GO:1901360,GO:1901362,GO:1901576
EggNOG free text desc.PHD and RING finger
EggNOG OGs38EN7@33154,3BF52@33208,3CUF1@33213,485Z7@7711,48X2U@7742,KOG0825@1,KOG0825@2759
COG Functional cat.O
Best tax levelVertebrata
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009
Hectar predicted targeting categoryother localisation
Exons2
Model size329
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924256.53978-CDS-S-dermatodea_contig12643:2609..28581622924256.53978-CDS-S-dermatodea_contig12643:2609..2858Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12643 2610..2858 -
1694079129.703074-CDS-S-dermatodea_contig12643:2609..28581694079129.703074-CDS-S-dermatodea_contig12643:2609..2858Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12643 2610..2858 -
1622924256.5519614-CDS-S-dermatodea_contig12643:3219..32971622924256.5519614-CDS-S-dermatodea_contig12643:3219..3297Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12643 3220..3297 -
1694079129.719068-CDS-S-dermatodea_contig12643:3219..32971694079129.719068-CDS-S-dermatodea_contig12643:3219..3297Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12643 3220..3297 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12643.1630.1prot_S-dermatodea_contig12643.1630.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12643 2610..3297 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12643.1630.1

>prot_S-dermatodea_contig12643.1630.1 ID=prot_S-dermatodea_contig12643.1630.1|Name=mRNA_S-dermatodea_contig12643.1630.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=109bp
LLCDGCGDAYHMYCLNPVLEEVPDDEWLCLPCMNADAEEVEETTASGKEY
RRKADKGRHAVLVVAENEQEKKIVDENMAKAAQLEKEIVLDRVGSDTRTL
TVLDVETAA
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mRNA from alignment at S-dermatodea_contig12643:2610..3297-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12643.1630.1 ID=mRNA_S-dermatodea_contig12643.1630.1|Name=mRNA_S-dermatodea_contig12643.1630.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=688bp|location=Sequence derived from alignment at S-dermatodea_contig12643:2610..3297- (Saccorhiza dermatodea SderLu1190fm monoicous)
CTCCTTTGTGACGGCTGTGGTGATGCTTACCACATGTACTGCCTCAATCC
TGTTCTTGAGGAAGTCCCCGATGACGAGGTGAGCCGTGTTCCATTCGACT
ACAACATCGTGTTCAATACTCCCCGCCCTTGTCCCCACTAATCAATAAAA
CCACACGTGGCTGTGAGCTTTCTTGTTACCCGAGGTTTCCGATATATTAC
TTTGTAGCAAGGGGTTCTTAGAACAGGAACAGTGTGTCCGCGAAAATGCC
TGTCTCTCTCCTCTCTACAAAATACCAGTAAACCCCTCTAAAGATTCAGA
AAATGTCAAATTCGCGAAGGTGTGGTGTGCCATTCGGGAATTATGTGTTG
CGAGACATGACCGTACATAGCAAAAATAAGCAACATCTCACACTTTCACC
ACGTCCCTTTTCGATCTCTTTGTGGAAATAAAACAACAGTGGTTGTGCCT
ACCCTGCATGAATGCTGATGCAGAGGAGGTAGAGGAGACGACGGCCAGCG
GCAAAGAATATCGCAGAAAAGCAGATAAGGGTAGACATGCCGTCCTAGTC
GTGGCTGAAAACGAGCAGGAGAAGAAAATTGTCGACGAAAACATGGCGAA
AGCAGCGCAATTGGAAAAGGAGATCGTGTTAGACAGGGTTGGATCGGACA
CCAGAACTCTGACCGTGCTCGACGTCGAGACAGCAGCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig12643:2610..3297-

>mRNA_S-dermatodea_contig12643.1630.1 ID=mRNA_S-dermatodea_contig12643.1630.1|Name=mRNA_S-dermatodea_contig12643.1630.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at S-dermatodea_contig12643:2610..3297- (Saccorhiza dermatodea SderLu1190fm monoicous)
CTCCTTTGTGACGGCTGTGGTGATGCTTACCACATGTACTGCCTCAATCC
TGTTCTTGAGGAAGTCCCCGATGACGAGCTCCTTTGTGACGGCTGTGGTG
ATGCTTACCACATGTACTGCCTCAATCCTGTTCTTGAGGAAGTCCCCGAT
GACGAGTGGTTGTGCCTACCCTGCATGAATGCTGATGCAGAGGAGGTAGA
GGAGACGACGGCCAGCGGCAAAGAATATCGCAGAAAAGCAGATAAGGGTA
GACATGCCGTCCTAGTCGTGGCTGAAAACGAGCAGGAGAAGAAAATTGTC
GACGAAAACATGGCGAAAGCAGCGCAATTGGAAAAGGAGATCGTGTTAGA
CAGGGTTGGATCGGACACCAGAACTCTGACCGTGCTCGACGTCGAGACAG
CAGCGTGGTTGTGCCTACCCTGCATGAATGCTGATGCAGAGGAGGTAGAG
GAGACGACGGCCAGCGGCAAAGAATATCGCAGAAAAGCAGATAAGGGTAG
ACATGCCGTCCTAGTCGTGGCTGAAAACGAGCAGGAGAAGAAAATTGTCG
ACGAAAACATGGCGAAAGCAGCGCAATTGGAAAAGGAGATCGTGTTAGAC
AGGGTTGGATCGGACACCAGAACTCTGACCGTGCTCGACGTCGAGACAGC
AGCG
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