mRNA_S-dermatodea_contig12643.1629.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig12643.1629.1 vs. uniprot
Match: A0A6H5K4R3_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4R3_9PHAE) HSP 1 Score: 182 bits (462), Expect = 6.200e-48 Identity = 133/394 (33.76%), Postives = 184/394 (46.70%), Query Frame = 1
Query: 1 YEPVAQSKKALAEIHENGLARHGNGSKTDQGRMFGPSDITADGAFERMEHMMMRNSIEPFLSKVP---RREQTIEMCVEILKREP-RKFGKRKDEKHFRPGDKQVEIDGIVDAMIEGGMTTTVLAALSCALVVFDSVTTACLRNQDTLGSNARDGHVVTRRGKNDTEIDILRAVLPPEFKNRESQYKTTEGCAVNHTKDDKVKDAYAVMLVIGRSIMRKLL---------------------------AIDRYELTE--------------------------------------------------------KIGPFDEKGKVYDNNKLYNLFKYAGKRALGLPFFGPNILRTIHVTKVVRYCVENNIDPNHPDVVRLFALARHGEHERKRSY 921
Y+PVA K+ A HEN L+R GNGSK D+GR F D F + ++ N I+P ++K+ RR++ IEMC+++L GKR DE+H P + +ID +V + + G++T L SCAL + DS+T+ACLR QD+LG A +V R L VLPP KN + K+ G VNH KD++ +AVMLVIGR +M L AID E +E K PF + GK Y++ +L +++ + GK ALGLP FGPNILRTIHVT V+ C I + V+ FALARHGE+E +++Y
Sbjct: 1135 YDPVASDKRNEANAHENSLSRLGNGSKVDKGRTFSIEDWKDKCKF--LADLVDENGIKPIMAKIGDAVRRKEVIEMCLDVLHDGGGATIGKRDDERHLYPEKYEEQIDEVVGVLAKAGVSTEDLERFSCALHILDSLTSACLRPQDSLGCLACKAYVKNGR---------LVFVLPPVGKNSRTLVKSVIGMVVNHAKDERTTGPFAVMLVIGRRLMTMHLQENYKAACAEQQLAREQQRDAEGRLSKAIDSDEFSEDDARRDLAAASDSLKRADKEVQHYAPRDSEKADQEDRVRNRRRRQARVLQFAELGDKAAPFTKYGKNYNDGQLRSMYLHVGKYALGLPAFGPNILRTIHVTTVMTVCYTLGIPQSDDRVLNHFALARHGEYEMRKAY 1517
BLAST of mRNA_S-dermatodea_contig12643.1629.1 vs. uniprot
Match: D7FKZ5_ECTSI (PHD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKZ5_ECTSI) HSP 1 Score: 177 bits (450), Expect = 2.480e-46 Identity = 132/387 (34.11%), Postives = 182/387 (47.03%), Query Frame = 1
Query: 1 YEPVAQSKKALAEIHENGLARHGNGSKTDQGRMFGPSDITADGAFERMEHMMMRNSIEPFLSKVPR----REQTIEMCVEILK-------REPRKFGKRKDEKHFRPGDKQVEIDGIVDAMIEGGMTTTVLAALSCALVVFDSVTTACLRNQDTLGSNARDGHVVTRRGKNDTEIDILRAVLPPEFKNRESQYKTTEGCAVNHTKDDKVKDAYAVMLVIGRSIMRK-------------------------------------LLAIDRYELTE--------------------------------KIGPFDEKGKVYDNNKLYNLFKYAGKRALGLPFFGPNILRTIHVTKVVRYCVENNIDPNHPDVVRLFALARHGEHERKRSY 921
Y+ VA K++ A +ENGL R GNG K D GR+ ++ D F + + + I PF+ ++ R++ ++MC+E+L+ + R GKR DE H P + +ID +V + G+ + LA+ S L + DS+T ACLR QD LG A +V R L VLPPE KN E+ K+ G V H K D+ K YAVM+VIGR +MRK +LA +LTE K+ F GK YD + L +++KY G+ LGLP FGPNILR+IHVT V+ C + I + +VR FALARHGE ERKR+Y
Sbjct: 1235 YKEVANVKRSDASDYENGLKRVGNGQKYDNGRLARGAEWKKDLKF--LGDSVEESVIAPFMDRIGEDAEGRDEVVKMCMEVLEDKSDATHNKNRYLGKRLDEDHLYPDSYRAQIDAVVGMFWDSGVDASDLASFSQGLQILDSLTAACLRPQDWLGCLASQVYVKGTR---------LIFVLPPECKNSEALKKSDIGLVVTHAKSDRTKGPYAVMMVIGRRLMRKHLEANYKDARSQVQKAQTNLADAVRNSTKDGVVKARKILAAAERQLTEYAPTESERKNEEDRAKAEKRDQREIGYAELGDKVCTFTAYGKNYDQSMLNDMYKYVGEYYLGLPAFGPNILRSIHVTDVMEVCYKIGIHYDDMRLVRHFALARHGEFERKRAY 1610
BLAST of mRNA_S-dermatodea_contig12643.1629.1 vs. uniprot
Match: A0A6H5KG30_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG30_9PHAE) HSP 1 Score: 130 bits (327), Expect = 2.240e-30 Identity = 114/392 (29.08%), Postives = 162/392 (41.33%), Query Frame = 1
Query: 88 QGRMFGPSDITADGAFERMEHMMMRNSIEPFLSKVP---RREQTIEMCVEILKREP-RKFGKRKDEKHFRPGDKQVEIDGIVDAMIEGG---------------------------MTTTVLAALSCALVVFDSVTTACLRNQDTLGSNARDGHVVTRRGKNDTEIDILRAVLPPEFKNRESQYKTTEGCAVNHTKDDKVKDAYAVMLVIGRSIMRKLL---------------------------AIDRYELTE--------------------------------------------------------KIGPFDEKGKVYDNNKLYNLFKYAGKRALGLPFFGPNILRTIHVTKVVRYCVENNIDPNHPDVVRLFALARHGEHERKRSY 921
+GR F D F + ++ N I+P ++K+ RR++ IEMC+++L GKR DE+H P + +ID +V + + G ++T L SCAL + DS+T+ACLR QD+LG A +V R L VL P KN + + G VNH KD++ +AVMLVIGR +M L AID E +E K PF + GK Y++ +L +++ + GK ALGLP FGPNILRTIHVT V+ C I + V+ FALARHGE+E +++Y
Sbjct: 10 KGRTFSIEDWKDKCKF--LADLVEENGIKPIMAKIGDAVRRKEVIEMCLDVLHDGGGATIGKRDDERHLYPDKYEEQIDEVVGVLAKAGXXXXXXXXXXXXXXXXXXXXXXXXXARVSTEDLERFSCALHILDSLTSACLRPQDSLGCLACKAYVKNGR---------LVIVLTPVGKNSRTLVNSVIGMVVNHAKDERTTGPFAVMLVIGRRLMTMHLQENYKAACAEQQLAREQQRDAEGRLSKAIDSDEFSEDDARRDLAAASDSLNRADKEVQHYAPRDSEKADQEDNVRNRRRRQARVLQFAELGDKAAPFTKYGKNYNDGQLRSMYLHVGKYALGLPAFGPNILRTIHVTTVMTVCYTLGIPQSDDRVLNHFALARHGEYEMRKAY 390
BLAST of mRNA_S-dermatodea_contig12643.1629.1 vs. uniprot
Match: A0A6H5JMD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMD7_9PHAE) HSP 1 Score: 67.4 bits (163), Expect = 5.480e-9 Identity = 33/62 (53.23%), Postives = 43/62 (69.35%), Query Frame = 1
Query: 736 LFKYAGKRALGLPFFGPNILRTIHVTKVVRYCVENNIDPNHPDVVRLFALARHGEHERKRSY 921
++ + GK ALGLP FGPNILRTIHVT V+ C I + V+ FALARHGE+E +++Y
Sbjct: 1 MYLHVGKYALGLPAFGPNILRTIHVTTVMTVCYTLGIPQSDDRVLNHFALARHGEYEMRKAY 62
BLAST of mRNA_S-dermatodea_contig12643.1629.1 vs. uniprot
Match: A0A6H5JY76_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY76_9PHAE) HSP 1 Score: 63.9 bits (154), Expect = 9.790e-8 Identity = 45/142 (31.69%), Postives = 67/142 (47.18%), Query Frame = 1
Query: 226 EILKREPRKFGKRKDEKHFRPGDKQVEIDGIVDAMIEGGMTTTVLAALSCALVVFDSVTTACLRNQDTLGSNARDGHVVTRRGKNDTEIDILRAVLPPEFKNRESQYKTTEGCAVNHTKDDKVKDAYAVMLVIGRSIMRKLL 651
E+L+ PRK R++E H P + + + IVD ++E L + C +D G ++ I R +LP FKN+++ +T G VNHTK +K + AYAVM VIGR +MR+LL
Sbjct: 305 ELLEMNPRK---RENEDHLCPPEFKQRNEAIVDELVEENKLAKDLCRMKC---------------KDVYGK----------------DVAITRCLLPRYFKNKKALENSTCGVVVNHTKHEKCEGAYAVMAVIGRKVMRRLL 412 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12643.1629.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig12643.1629.1 >prot_S-dermatodea_contig12643.1629.1 ID=prot_S-dermatodea_contig12643.1629.1|Name=mRNA_S-dermatodea_contig12643.1629.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=311bp YEPVAQSKKALAEIHENGLARHGNGSKTDQGRMFGPSDITADGAFERMEHback to top mRNA from alignment at S-dermatodea_contig12643:534..1541- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig12643.1629.1 ID=mRNA_S-dermatodea_contig12643.1629.1|Name=mRNA_S-dermatodea_contig12643.1629.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1008bp|location=Sequence derived from alignment at S-dermatodea_contig12643:534..1541- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig12643:534..1541- >mRNA_S-dermatodea_contig12643.1629.1 ID=mRNA_S-dermatodea_contig12643.1629.1|Name=mRNA_S-dermatodea_contig12643.1629.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1866bp|location=Sequence derived from alignment at S-dermatodea_contig12643:534..1541- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |