mRNA_S-dermatodea_contig12643.1629.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12643.1629.1
Unique NamemRNA_S-dermatodea_contig12643.1629.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig12643.1629.1 vs. uniprot
Match: A0A6H5K4R3_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4R3_9PHAE)

HSP 1 Score: 182 bits (462), Expect = 6.200e-48
Identity = 133/394 (33.76%), Postives = 184/394 (46.70%), Query Frame = 1
Query:    1 YEPVAQSKKALAEIHENGLARHGNGSKTDQGRMFGPSDITADGAFERMEHMMMRNSIEPFLSKVP---RREQTIEMCVEILKREP-RKFGKRKDEKHFRPGDKQVEIDGIVDAMIEGGMTTTVLAALSCALVVFDSVTTACLRNQDTLGSNARDGHVVTRRGKNDTEIDILRAVLPPEFKNRESQYKTTEGCAVNHTKDDKVKDAYAVMLVIGRSIMRKLL---------------------------AIDRYELTE--------------------------------------------------------KIGPFDEKGKVYDNNKLYNLFKYAGKRALGLPFFGPNILRTIHVTKVVRYCVENNIDPNHPDVVRLFALARHGEHERKRSY 921
            Y+PVA  K+  A  HEN L+R GNGSK D+GR F   D      F  +  ++  N I+P ++K+    RR++ IEMC+++L        GKR DE+H  P   + +ID +V  + + G++T  L   SCAL + DS+T+ACLR QD+LG  A   +V   R         L  VLPP  KN  +  K+  G  VNH KD++    +AVMLVIGR +M   L                           AID  E +E                                                        K  PF + GK Y++ +L +++ + GK ALGLP FGPNILRTIHVT V+  C    I  +   V+  FALARHGE+E +++Y
Sbjct: 1135 YDPVASDKRNEANAHENSLSRLGNGSKVDKGRTFSIEDWKDKCKF--LADLVDENGIKPIMAKIGDAVRRKEVIEMCLDVLHDGGGATIGKRDDERHLYPEKYEEQIDEVVGVLAKAGVSTEDLERFSCALHILDSLTSACLRPQDSLGCLACKAYVKNGR---------LVFVLPPVGKNSRTLVKSVIGMVVNHAKDERTTGPFAVMLVIGRRLMTMHLQENYKAACAEQQLAREQQRDAEGRLSKAIDSDEFSEDDARRDLAAASDSLKRADKEVQHYAPRDSEKADQEDRVRNRRRRQARVLQFAELGDKAAPFTKYGKNYNDGQLRSMYLHVGKYALGLPAFGPNILRTIHVTTVMTVCYTLGIPQSDDRVLNHFALARHGEYEMRKAY 1517          
BLAST of mRNA_S-dermatodea_contig12643.1629.1 vs. uniprot
Match: D7FKZ5_ECTSI (PHD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKZ5_ECTSI)

HSP 1 Score: 177 bits (450), Expect = 2.480e-46
Identity = 132/387 (34.11%), Postives = 182/387 (47.03%), Query Frame = 1
Query:    1 YEPVAQSKKALAEIHENGLARHGNGSKTDQGRMFGPSDITADGAFERMEHMMMRNSIEPFLSKVPR----REQTIEMCVEILK-------REPRKFGKRKDEKHFRPGDKQVEIDGIVDAMIEGGMTTTVLAALSCALVVFDSVTTACLRNQDTLGSNARDGHVVTRRGKNDTEIDILRAVLPPEFKNRESQYKTTEGCAVNHTKDDKVKDAYAVMLVIGRSIMRK-------------------------------------LLAIDRYELTE--------------------------------KIGPFDEKGKVYDNNKLYNLFKYAGKRALGLPFFGPNILRTIHVTKVVRYCVENNIDPNHPDVVRLFALARHGEHERKRSY 921
            Y+ VA  K++ A  +ENGL R GNG K D GR+   ++   D  F  +   +  + I PF+ ++      R++ ++MC+E+L+        + R  GKR DE H  P   + +ID +V    + G+  + LA+ S  L + DS+T ACLR QD LG  A   +V   R         L  VLPPE KN E+  K+  G  V H K D+ K  YAVM+VIGR +MRK                                     +LA    +LTE                                K+  F   GK YD + L +++KY G+  LGLP FGPNILR+IHVT V+  C +  I  +   +VR FALARHGE ERKR+Y
Sbjct: 1235 YKEVANVKRSDASDYENGLKRVGNGQKYDNGRLARGAEWKKDLKF--LGDSVEESVIAPFMDRIGEDAEGRDEVVKMCMEVLEDKSDATHNKNRYLGKRLDEDHLYPDSYRAQIDAVVGMFWDSGVDASDLASFSQGLQILDSLTAACLRPQDWLGCLASQVYVKGTR---------LIFVLPPECKNSEALKKSDIGLVVTHAKSDRTKGPYAVMMVIGRRLMRKHLEANYKDARSQVQKAQTNLADAVRNSTKDGVVKARKILAAAERQLTEYAPTESERKNEEDRAKAEKRDQREIGYAELGDKVCTFTAYGKNYDQSMLNDMYKYVGEYYLGLPAFGPNILRSIHVTDVMEVCYKIGIHYDDMRLVRHFALARHGEFERKRAY 1610          
BLAST of mRNA_S-dermatodea_contig12643.1629.1 vs. uniprot
Match: A0A6H5KG30_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG30_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 2.240e-30
Identity = 114/392 (29.08%), Postives = 162/392 (41.33%), Query Frame = 1
Query:   88 QGRMFGPSDITADGAFERMEHMMMRNSIEPFLSKVP---RREQTIEMCVEILKREP-RKFGKRKDEKHFRPGDKQVEIDGIVDAMIEGG---------------------------MTTTVLAALSCALVVFDSVTTACLRNQDTLGSNARDGHVVTRRGKNDTEIDILRAVLPPEFKNRESQYKTTEGCAVNHTKDDKVKDAYAVMLVIGRSIMRKLL---------------------------AIDRYELTE--------------------------------------------------------KIGPFDEKGKVYDNNKLYNLFKYAGKRALGLPFFGPNILRTIHVTKVVRYCVENNIDPNHPDVVRLFALARHGEHERKRSY 921
            +GR F   D      F  +  ++  N I+P ++K+    RR++ IEMC+++L        GKR DE+H  P   + +ID +V  + + G                           ++T  L   SCAL + DS+T+ACLR QD+LG  A   +V   R         L  VL P  KN  +   +  G  VNH KD++    +AVMLVIGR +M   L                           AID  E +E                                                        K  PF + GK Y++ +L +++ + GK ALGLP FGPNILRTIHVT V+  C    I  +   V+  FALARHGE+E +++Y
Sbjct:   10 KGRTFSIEDWKDKCKF--LADLVEENGIKPIMAKIGDAVRRKEVIEMCLDVLHDGGGATIGKRDDERHLYPDKYEEQIDEVVGVLAKAGXXXXXXXXXXXXXXXXXXXXXXXXXARVSTEDLERFSCALHILDSLTSACLRPQDSLGCLACKAYVKNGR---------LVIVLTPVGKNSRTLVNSVIGMVVNHAKDERTTGPFAVMLVIGRRLMTMHLQENYKAACAEQQLAREQQRDAEGRLSKAIDSDEFSEDDARRDLAAASDSLNRADKEVQHYAPRDSEKADQEDNVRNRRRRQARVLQFAELGDKAAPFTKYGKNYNDGQLRSMYLHVGKYALGLPAFGPNILRTIHVTTVMTVCYTLGIPQSDDRVLNHFALARHGEYEMRKAY 390          
BLAST of mRNA_S-dermatodea_contig12643.1629.1 vs. uniprot
Match: A0A6H5JMD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMD7_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 5.480e-9
Identity = 33/62 (53.23%), Postives = 43/62 (69.35%), Query Frame = 1
Query:  736 LFKYAGKRALGLPFFGPNILRTIHVTKVVRYCVENNIDPNHPDVVRLFALARHGEHERKRSY 921
            ++ + GK ALGLP FGPNILRTIHVT V+  C    I  +   V+  FALARHGE+E +++Y
Sbjct:    1 MYLHVGKYALGLPAFGPNILRTIHVTTVMTVCYTLGIPQSDDRVLNHFALARHGEYEMRKAY 62          
BLAST of mRNA_S-dermatodea_contig12643.1629.1 vs. uniprot
Match: A0A6H5JY76_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY76_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 9.790e-8
Identity = 45/142 (31.69%), Postives = 67/142 (47.18%), Query Frame = 1
Query:  226 EILKREPRKFGKRKDEKHFRPGDKQVEIDGIVDAMIEGGMTTTVLAALSCALVVFDSVTTACLRNQDTLGSNARDGHVVTRRGKNDTEIDILRAVLPPEFKNRESQYKTTEGCAVNHTKDDKVKDAYAVMLVIGRSIMRKLL 651
            E+L+  PRK   R++E H  P + +   + IVD ++E       L  + C               +D  G                 ++ I R +LP  FKN+++   +T G  VNHTK +K + AYAVM VIGR +MR+LL
Sbjct:  305 ELLEMNPRK---RENEDHLCPPEFKQRNEAIVDELVEENKLAKDLCRMKC---------------KDVYGK----------------DVAITRCLLPRYFKNKKALENSTCGVVVNHTKHEKCEGAYAVMAVIGRKVMRRLL 412          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12643.1629.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5K4R3_9PHAE6.200e-4833.76PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
D7FKZ5_ECTSI2.480e-4634.11PHD domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KG30_9PHAE2.240e-3029.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMD7_9PHAE5.480e-953.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JY76_9PHAE9.790e-831.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12643contigS-dermatodea_contig12643:534..1541 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size933
Cds size933
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924256.5827932-CDS-S-dermatodea_contig12643:533..8071622924256.5827932-CDS-S-dermatodea_contig12643:533..807Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12643 534..807 -
1694079129.7290268-CDS-S-dermatodea_contig12643:533..8071694079129.7290268-CDS-S-dermatodea_contig12643:533..807Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12643 534..807 -
1622924256.5912974-CDS-S-dermatodea_contig12643:882..15411622924256.5912974-CDS-S-dermatodea_contig12643:882..1541Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12643 883..1541 -
1694079129.7402492-CDS-S-dermatodea_contig12643:882..15411694079129.7402492-CDS-S-dermatodea_contig12643:882..1541Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12643 883..1541 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12643.1629.1prot_S-dermatodea_contig12643.1629.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12643 534..1541 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12643.1629.1

>prot_S-dermatodea_contig12643.1629.1 ID=prot_S-dermatodea_contig12643.1629.1|Name=mRNA_S-dermatodea_contig12643.1629.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=311bp
YEPVAQSKKALAEIHENGLARHGNGSKTDQGRMFGPSDITADGAFERMEH
MMMRNSIEPFLSKVPRREQTIEMCVEILKREPRKFGKRKDEKHFRPGDKQ
VEIDGIVDAMIEGGMTTTVLAALSCALVVFDSVTTACLRNQDTLGSNARD
GHVVTRRGKNDTEIDILRAVLPPEFKNRESQYKTTEGCAVNHTKDDKVKD
AYAVMLVIGRSIMRKLLAIDRYELTEKIGPFDEKGKVYDNNKLYNLFKYA
GKRALGLPFFGPNILRTIHVTKVVRYCVENNIDPNHPDVVRLFALARHGE
HERKRSYASEK
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mRNA from alignment at S-dermatodea_contig12643:534..1541-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12643.1629.1 ID=mRNA_S-dermatodea_contig12643.1629.1|Name=mRNA_S-dermatodea_contig12643.1629.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1008bp|location=Sequence derived from alignment at S-dermatodea_contig12643:534..1541- (Saccorhiza dermatodea SderLu1190fm monoicous)
TATGAACCAGTCGCACAGTCTAAGAAAGCTCTGGCCGAAATACATGAGAA CGGCCTGGCGAGGCATGGAAATGGGAGCAAAACGGATCAGGGCAGGATGT TCGGCCCGAGTGACATTACAGCCGACGGGGCCTTCGAGCGCATGGAACAT ATGATGATGAGGAATTCAATCGAGCCTTTCCTGTCTAAAGTACCGCGTCG GGAACAAACTATCGAGATGTGTGTGGAAATTCTCAAGCGCGAGCCGAGGA AATTTGGCAAGCGCAAAGACGAAAAGCATTTTCGCCCCGGTGATAAGCAA GTGGAAATCGATGGCATCGTCGACGCGATGATCGAGGGCGGGATGACGAC GACAGTACTAGCTGCACTAAGCTGCGCTCTGGTCGTCTTTGACTCGGTGA CAACTGCGTGCTTGAGGAACCAGGACACGCTGGGATCAAACGCGCGAGAC GGGCACGTCGTAACGAGAAGGGGAAAAAACGATACGGAAATCGACATTCT GCGGGCCGTTCTCCCACCTGAATTCAAGAACCGCGAGTCCCAGTATAAAA CCACAGAGGGTTGCGCGGTGAACCACACAAAGGATGACAAGGTGAAAGAT GCATATGCGGTTATGCTAGTGATAGGTAGGTCCATCATGCGAAAGCTATT GGCAATAGAGTTGGCGAAAGAGCAAAACAATCTGAAGAAGGCGGGGGGGG CTAATGTAAACAAGAAGATAAATGCCGCAGCTAGTCGGTACGAGCTCACT GAGAAGATTGGTCCTTTCGACGAAAAGGGTAAGGTTTACGATAACAACAA GCTGTACAATCTTTTCAAGTACGCGGGTAAGCGTGCACTTGGTTTACCGT TTTTCGGCCCCAATATCCTCCGAACCATACACGTCACCAAGGTGGTAAGG TACTGCGTTGAGAACAACATCGACCCCAATCACCCTGATGTTGTGCGTCT CTTTGCCCTTGCGAGACACGGTGAGCACGAAAGAAAACGGTCGTACGCCA GCGAAAAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig12643:534..1541-

>mRNA_S-dermatodea_contig12643.1629.1 ID=mRNA_S-dermatodea_contig12643.1629.1|Name=mRNA_S-dermatodea_contig12643.1629.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1866bp|location=Sequence derived from alignment at S-dermatodea_contig12643:534..1541- (Saccorhiza dermatodea SderLu1190fm monoicous)
TATGAACCAGTCGCACAGTCTAAGAAAGCTCTGGCCGAAATACATGAGAA
CGGCCTGGCGAGGCATGGAAATGGGAGCAAAACGGATCAGGGCAGGATGT
TCGGCCCGAGTGACATTACAGCCGACGGGGCCTTCGAGCGCATGGAACAT
ATGATGATGAGGAATTCAATCGAGCCTTTCCTGTCTAAAGTACCGCGTCG
GGAACAAACTATCGAGATGTGTGTGGAAATTCTCAAGCGCGAGCCGAGGA
AATTTGGCAAGCGCAAAGACGAAAAGCATTTTCGCCCCGGTGATAAGCAA
GTGGAAATCGATGGCATCGTCGACGCGATGATCGAGGGCGGGATGACGAC
GACAGTACTAGCTGCACTAAGCTGCGCTCTGGTCGTCTTTGACTCGGTGA
CAACTGCGTGCTTGAGGAACCAGGACACGCTGGGATCAAACGCGCGAGAC
GGGCACGTCGTAACGAGAAGGGGAAAAAACGATACGGAAATCGACATTCT
GCGGGCCGTTCTCCCACCTGAATTCAAGAACCGCGAGTCCCAGTATAAAA
CCACAGAGGGTTGCGCGGTGAACCACACAAAGGATGACAAGGTGAAAGAT
GCATATGCGGTTATGCTAGTGATAGGTAGGTCCATCATGCGAAAGCTATT
GGCAATAGATATGAACCAGTCGCACAGTCTAAGAAAGCTCTGGCCGAAAT
ACATGAGAACGGCCTGGCGAGGCATGGAAATGGGAGCAAAACGGATCAGG
GCAGGATGTTCGGCCCGAGTGACATTACAGCCGACGGGGCCTTCGAGCGC
ATGGAACATATGATGATGAGGAATTCAATCGAGCCTTTCCTGTCTAAAGT
ACCGCGTCGGGAACAAACTATCGAGATGTGTGTGGAAATTCTCAAGCGCG
AGCCGAGGAAATTTGGCAAGCGCAAAGACGAAAAGCATTTTCGCCCCGGT
GATAAGCAAGTGGAAATCGATGGCATCGTCGACGCGATGATCGAGGGCGG
GATGACGACGACAGTACTAGCTGCACTAAGCTGCGCTCTGGTCGTCTTTG
ACTCGGTGACAACTGCGTGCTTGAGGAACCAGGACACGCTGGGATCAAAC
GCGCGAGACGGGCACGTCGTAACGAGAAGGGGAAAAAACGATACGGAAAT
CGACATTCTGCGGGCCGTTCTCCCACCTGAATTCAAGAACCGCGAGTCCC
AGTATAAAACCACAGAGGGTTGCGCGGTGAACCACACAAAGGATGACAAG
GTGAAAGATGCATATGCGGTTATGCTAGTGATAGGTAGGTCCATCATGCG
AAAGCTATTGGCAATAGATCGGTACGAGCTCACTGAGAAGATTGGTCCTT
TCGACGAAAAGGGTAAGGTTTACGATAACAACAAGCTGTACAATCTTTTC
AAGTACGCGGGTAAGCGTGCACTTGGTTTACCGTTTTTCGGCCCCAATAT
CCTCCGAACCATACACGTCACCAAGGTGGTAAGGTACTGCGTTGAGAACA
ACATCGACCCCAATCACCCTGATGTTGTGCGTCTCTTTGCCCTTGCGAGA
CACGGTGAGCACGAAAGAAAACGGTCGTACGCCAGCGAAAAATCGGTACG
AGCTCACTGAGAAGATTGGTCCTTTCGACGAAAAGGGTAAGGTTTACGAT
AACAACAAGCTGTACAATCTTTTCAAGTACGCGGGTAAGCGTGCACTTGG
TTTACCGTTTTTCGGCCCCAATATCCTCCGAACCATACACGTCACCAAGG
TGGTAAGGTACTGCGTTGAGAACAACATCGACCCCAATCACCCTGATGTT
GTGCGTCTCTTTGCCCTTGCGAGACACGGTGAGCACGAAAGAAAACGGTC
GTACGCCAGCGAAAAA
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