mRNA_S-dermatodea_contig12639.1626.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12639.1626.1
Unique NamemRNA_S-dermatodea_contig12639.1626.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12639.1626.1 vs. uniprot
Match: D8LRQ5_ECTSI (Non-specific serine/threonine protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRQ5_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 2.420e-15
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1 
Query:    1 VKRALLADITRLCVFFGFENTLDSILPQLITFLNDR 108
            VKRALLADITRLCVFFGFENTLDSILPQLITFLNDR
Sbjct:  365 VKRALLADITRLCVFFGFENTLDSILPQLITFLNDR 400
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BLAST of mRNA_S-dermatodea_contig12639.1626.1 vs. uniprot
Match: A0A6H5JSX2_9PHAE (Non-specific serine/threonine protein kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSX2_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 2.420e-15
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1 
Query:    1 VKRALLADITRLCVFFGFENTLDSILPQLITFLNDR 108
            VKRALLADITRLCVFFGFENTLDSILPQLITFLNDR
Sbjct:  572 VKRALLADITRLCVFFGFENTLDSILPQLITFLNDR 607
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BLAST of mRNA_S-dermatodea_contig12639.1626.1 vs. uniprot
Match: A0A2P4XPT4_9STRA (Phosphoinositide 3-kinase regulatory subunit n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XPT4_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 6.670e-12
Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = 1 
Query:    1 VKRALLADITRLCVFFGFENTLDSILPQLITFLND 105
            VKRALL DITRLCVFFG E TLD +LPQLITFLND
Sbjct:   38 VKRALLVDITRLCVFFGQERTLDVVLPQLITFLND 72
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BLAST of mRNA_S-dermatodea_contig12639.1626.1 vs. uniprot
Match: A0A5D6XP64_9STRA (Non-specific serine/threonine protein kinase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XP64_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 8.090e-12
Identity = 31/36 (86.11%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:    1 VKRALLADITRLCVFFGFENTLDSILPQLITFLNDR 108
            VKRALL DITRLCVFFG E TLD +LPQLITFLNDR
Sbjct:  768 VKRALLVDITRLCVFFGRERTLDVVLPQLITFLNDR 803
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BLAST of mRNA_S-dermatodea_contig12639.1626.1 vs. uniprot
Match: K3WTL6_GLOUD (Non-specific serine/threonine protein kinase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WTL6_GLOUD)

HSP 1 Score: 66.6 bits (161), Expect = 8.100e-12
Identity = 31/36 (86.11%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:    1 VKRALLADITRLCVFFGFENTLDSILPQLITFLNDR 108
            VKRALL DITRLCVFFG E TLD +LPQLITFLNDR
Sbjct:  796 VKRALLVDITRLCVFFGRERTLDVVLPQLITFLNDR 831
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BLAST of mRNA_S-dermatodea_contig12639.1626.1 vs. uniprot
Match: A0A8K1C2E6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C2E6_PYTOL)

HSP 1 Score: 66.2 bits (160), Expect = 1.110e-11
Identity = 30/36 (83.33%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:    1 VKRALLADITRLCVFFGFENTLDSILPQLITFLNDR 108
            VKRALL DITRLC+FFG E TLD +LPQLITFLNDR
Sbjct:  757 VKRALLVDITRLCIFFGRERTLDVVLPQLITFLNDR 792
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BLAST of mRNA_S-dermatodea_contig12639.1626.1 vs. uniprot
Match: T0R693_SAPDV (Non-specific serine/threonine protein kinase n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0R693_SAPDV)

HSP 1 Score: 65.5 bits (158), Expect = 2.070e-11
Identity = 30/36 (83.33%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:    1 VKRALLADITRLCVFFGFENTLDSILPQLITFLNDR 108
            VKRALL DITRLC+FFG E TLD +LPQLITFLNDR
Sbjct:  714 VKRALLHDITRLCIFFGRERTLDVVLPQLITFLNDR 749
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BLAST of mRNA_S-dermatodea_contig12639.1626.1 vs. uniprot
Match: A0A1V9Z1H9_9STRA (Non-specific serine/threonine protein kinase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z1H9_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 2.070e-11
Identity = 30/36 (83.33%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:    1 VKRALLADITRLCVFFGFENTLDSILPQLITFLNDR 108
            VKRALL DITRLC+FFG E TLD +LPQLITFLNDR
Sbjct:  713 VKRALLHDITRLCIFFGRERTLDVVLPQLITFLNDR 748
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BLAST of mRNA_S-dermatodea_contig12639.1626.1 vs. uniprot
Match: A0A067CH76_SAPPC (Non-specific serine/threonine protein kinase n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CH76_SAPPC)

HSP 1 Score: 65.5 bits (158), Expect = 2.070e-11
Identity = 30/36 (83.33%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:    1 VKRALLADITRLCVFFGFENTLDSILPQLITFLNDR 108
            VKRALL DITRLC+FFG E TLD +LPQLITFLNDR
Sbjct:  380 VKRALLHDITRLCIFFGRERTLDVVLPQLITFLNDR 415
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BLAST of mRNA_S-dermatodea_contig12639.1626.1 vs. uniprot
Match: A0A662WUP7_9STRA (Non-specific serine/threonine protein kinase n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WUP7_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 5.270e-11
Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = 1 
Query:    1 VKRALLADITRLCVFFGFENTLDSILPQLITFLND 105
            VKRALL DITRLCVFFG E TLD +LPQLITFLND
Sbjct:  807 VKRALLVDITRLCVFFGRERTLDVVLPQLITFLND 841
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12639.1626.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRQ5_ECTSI2.420e-15100.00Non-specific serine/threonine protein kinase n=1 T... [more]
A0A6H5JSX2_9PHAE2.420e-15100.00Non-specific serine/threonine protein kinase n=1 T... [more]
A0A2P4XPT4_9STRA6.670e-1285.71Phosphoinositide 3-kinase regulatory subunit n=1 T... [more]
A0A5D6XP64_9STRA8.090e-1286.11Non-specific serine/threonine protein kinase n=1 T... [more]
K3WTL6_GLOUD8.100e-1286.11Non-specific serine/threonine protein kinase n=1 T... [more]
A0A8K1C2E6_PYTOL1.110e-1183.33Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
T0R693_SAPDV2.070e-1183.33Non-specific serine/threonine protein kinase n=1 T... [more]
A0A1V9Z1H9_9STRA2.070e-1183.33Non-specific serine/threonine protein kinase n=1 T... [more]
A0A067CH76_SAPPC2.070e-1183.33Non-specific serine/threonine protein kinase n=1 T... [more]
A0A662WUP7_9STRA5.270e-1185.71Non-specific serine/threonine protein kinase n=2 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12639contigS-dermatodea_contig12639:328..438 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.9
Seed ortholog evalue4.5e-12
Seed eggNOG ortholog2880.D8LRQ5
KEGG koko:K08333
KEGG Pathwayko04136,ko04138,ko04140,ko04371,map04136,map04138,map04140,map04371
GOsGO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005737,GO:0005768,GO:0005770,GO:0005942,GO:0006464,GO:0006468,GO:0006605,GO:0006623,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006886,GO:0006914,GO:0007034,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0016236,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0019898,GO:0030242,GO:0031410,GO:0031967,GO:0031975,GO:0031982,GO:0032507,GO:0032991,GO:0033036,GO:0033365,GO:0034067,GO:0034271,GO:0034272,GO:0034613,GO:0035032,GO:0036211,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044232,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045053,GO:0045184,GO:0045185,GO:0045324,GO:0046907,GO:0051179,GO:0051234,GO:0051235,GO:0051641,GO:0051649,GO:0051651,GO:0061695,GO:0061919,GO:0065007,GO:0065008,GO:0070727,GO:0071561,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072665,GO:0072666,GO:0097708,GO:0098796,GO:0140096,GO:1901564,GO:1902494,GO:1990234
EggNOG free text desc.autophagy of peroxisome
EggNOG OGsKOG1240@1,KOG1240@2759
EC2.7.11.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size111
Cds size111
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924256.4124584-CDS-S-dermatodea_contig12639:327..4381622924256.4124584-CDS-S-dermatodea_contig12639:327..438Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12639 328..438 -
1694079129.629478-CDS-S-dermatodea_contig12639:327..4381694079129.629478-CDS-S-dermatodea_contig12639:327..438Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12639 328..438 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12639.1626.1prot_S-dermatodea_contig12639.1626.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12639 328..438 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12639.1626.1

>prot_S-dermatodea_contig12639.1626.1 ID=prot_S-dermatodea_contig12639.1626.1|Name=mRNA_S-dermatodea_contig12639.1626.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=37bp
VKRALLADITRLCVFFGFENTLDSILPQLITFLNDR*
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mRNA from alignment at S-dermatodea_contig12639:328..438-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12639.1626.1 ID=mRNA_S-dermatodea_contig12639.1626.1|Name=mRNA_S-dermatodea_contig12639.1626.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=111bp|location=Sequence derived from alignment at S-dermatodea_contig12639:328..438- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGAAGCGAGCCCTCCTGGCTGACATAACGCGGCTGTGCGTCTTTTTCGG
GTTCGAGAACACCCTCGACTCCATCCTCCCGCAGCTCATCACTTTCCTTA
ACGACAGGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig12639:328..438-

>mRNA_S-dermatodea_contig12639.1626.1 ID=mRNA_S-dermatodea_contig12639.1626.1|Name=mRNA_S-dermatodea_contig12639.1626.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=222bp|location=Sequence derived from alignment at S-dermatodea_contig12639:328..438- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGAAGCGAGCCCTCCTGGCTGACATAACGCGGCTGTGCGTCTTTTTCGG
GTTCGAGAACACCCTCGACTCCATCCTCCCGCAGCTCATCACTTTCCTTA
ACGACAGGTGAGTGAAGCGAGCCCTCCTGGCTGACATAACGCGGCTGTGC
GTCTTTTTCGGGTTCGAGAACACCCTCGACTCCATCCTCCCGCAGCTCAT
CACTTTCCTTAACGACAGGTGA
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