mRNA_S-dermatodea_contig12634.1623.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12634.1623.1
Unique NamemRNA_S-dermatodea_contig12634.1623.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig12634.1623.1 vs. uniprot
Match: D7G5K5_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5K5_ECTSI)

HSP 1 Score: 145 bits (367), Expect = 1.120e-38
Identity = 74/86 (86.05%), Postives = 81/86 (94.19%), Query Frame = 1 
Query:    1 QVLQERVLRLETEALASEKQASSMSERQRFEGDVLPTIKSPRRPQDFSCTHPDRKHYARGLCVSCYQRWLRNRNLAEEETAAAAAA 258
            Q+LQERVLRLETEA+ASEKQASSMSERQRFEGD+ P+IKSPRR QDFSCTHP+RKHYARGLCVSCYQRWLR RNLAE++TAA A A
Sbjct: 1994 QLLQERVLRLETEAIASEKQASSMSERQRFEGDIGPSIKSPRRSQDFSCTHPERKHYARGLCVSCYQRWLRYRNLAEDDTAAVAGA 2079
[Close]
BLAST of mRNA_S-dermatodea_contig12634.1623.1 vs. uniprot
Match: A0A6H5J8B2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8B2_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 5.280e-38
Identity = 73/86 (84.88%), Postives = 80/86 (93.02%), Query Frame = 1 
Query:    1 QVLQERVLRLETEALASEKQASSMSERQRFEGDVLPTIKSPRRPQDFSCTHPDRKHYARGLCVSCYQRWLRNRNLAEEETAAAAAA 258
            Q+LQERVLRLETEA+ASEKQASSMSERQRFEGD+ P+IKSPRR QDFSCTHP+RKHYARGLCVSCYQRWLR RNLAE++ AA A A
Sbjct: 1365 QLLQERVLRLETEAIASEKQASSMSERQRFEGDIGPSIKSPRRSQDFSCTHPERKHYARGLCVSCYQRWLRYRNLAEDDAAAVAGA 1450
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12634.1623.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5K5_ECTSI1.120e-3886.05Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5J8B2_9PHAE5.280e-3884.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12634contigS-dermatodea_contig12634:1318..4138 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size269
Cds size267
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12634.1623.1prot_S-dermatodea_contig12634.1623.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12634 1318..4137 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924256.2645953-CDS-S-dermatodea_contig12634:1317..14331622924256.2645953-CDS-S-dermatodea_contig12634:1317..1433Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12634 1318..1433 +
1694079129.5161197-CDS-S-dermatodea_contig12634:1317..14331694079129.5161197-CDS-S-dermatodea_contig12634:1317..1433Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12634 1318..1433 +
1622924256.2759817-CDS-S-dermatodea_contig12634:3323..34101622924256.2759817-CDS-S-dermatodea_contig12634:3323..3410Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12634 3324..3410 +
1694079129.5269318-CDS-S-dermatodea_contig12634:3323..34101694079129.5269318-CDS-S-dermatodea_contig12634:3323..3410Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12634 3324..3410 +
1622924256.2856817-CDS-S-dermatodea_contig12634:4073..41371622924256.2856817-CDS-S-dermatodea_contig12634:4073..4137Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12634 4074..4137 +
1694079129.5427303-CDS-S-dermatodea_contig12634:4073..41371694079129.5427303-CDS-S-dermatodea_contig12634:4073..4137Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12634 4074..4137 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12634.1623.1

>prot_S-dermatodea_contig12634.1623.1 ID=prot_S-dermatodea_contig12634.1623.1|Name=mRNA_S-dermatodea_contig12634.1623.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=89bp
QVLQERVLRLETEALASEKQASSMSERQRFEGDVLPTIKSPRRPQDFSCT
HPDRKHYARGLCVSCYQRWLRNRNLAEEETAAAAAAVAA
back to top

mRNA from alignment at S-dermatodea_contig12634:1318..4138+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12634.1623.1 ID=mRNA_S-dermatodea_contig12634.1623.1|Name=mRNA_S-dermatodea_contig12634.1623.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2821bp|location=Sequence derived from alignment at S-dermatodea_contig12634:1318..4138+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGTTTTGCAGGAGCGCGTGCTGAGGCTGGAGACCGAGGCATTGGCCTC
AGAGAAGCAAGCCAGCAGCATGTCGGAGCGACAGCGATTCGAGGGGGACG
TCCTTCCCACGATCAAGTAAGCCTTACAGGCTTGGGACCCCCCCCCCCCC
GCTCTTGCCCGTTGTGGCAAAGGGTATGGTATATATATCCCGAGGTTAAA
CTCCTGGAGGGTATACCTTTAAAAATGTGGATATAGGCAGTATATACATT
TGGGGGGGGGGGGAGTACGAGGAGTATCTTTGTAGCACATGATTCTGCAA
TAAAAGGAGAGCTGTTTTTTATACTGAGCAGTCATTTCACAGCAATCAGA
CAAAGGTAGTATGGGTGTACTATGTAAAACTCACCAAAGAATCCAACAGA
AAGGCTCAATGAAGAGAATATATGTAATAAAAGTATGTGGTAGGAAATGA
ACATATAATATTATTGGCTCATAAAAACGCAGCAAGGATACCTCACCAGG
ATATACCTCAGGACAAAAACTCATGTCCTGTATGATACCATAACCATATA
ACATCATACATGATAAGACACCATAGCATCATATGTATCAAGTGAGCCTC
CATAGGTGTAGCTTGGACCATATTCCCTCCTGAAAAGGTGGGACCCCAAC
GCTCGCTCTAAGTTACTGAAATCTTACTTTTTTAGGGGGGGTGTACGTAT
GTTTAACGCATGTCGTATCCAGACGACGGGCATAGACCCCGCGTCCCAAC
AATGCCGGGACGGAGCGGTATGCCGGGTGCGTGCTCGGTTCGCCAGCCTG
GCTGGGCTGCGTTTCACAAGAATGGTGCATACCAGCTGCTATCGGTACCC
ATCATTCTTGCGTTTGCGACGCCAAGCCGATATGCCGTGGGTTTTGATTT
GACACACCGGGTAACCAAATATTGCACATCCAGTAGGCGTGACTATACTC
CAAGTACCGCAAATAAACTTTGATTTCCGTGCGAACGCAAAAGCGCCGCG
CGCACGCAGCATACACGACGTTGCATGTGTGATACACTCGGACCATAATC
TGCTAATGAGCTCTCCTTGCGGAGTACCGGTCATGAGTCAATTGGTTGCT
CTAGGGCGTTCCAACTAGTCTATAGTGCAGCAGGTCCTACTGTGTACAGT
ATAGGATGTGGTTCGTTTCACTCCTTTGGGGAGAGAGGGAGGGGGACATG
AAGTCGTTCGACCGAAATATTTTGAGCTCACAGGACGCACTGCATCAACT
CCCCCATATTGCCCGATAAATATCAGTTTTACAGCTCCATGCCACAAGAG
CCAACCCTCCCAAAAGCATGTAAGAGTCTCGTCTCGTTTTACTTAACTCA
CTATTAATAGTTGCAAGCCACGGCTGTCGCCCGTGGTAGTAGTTTAATTC
AAAACATCGGCTTGAAAAAATCGGCCGAAAATCGTGTAGGAGTTTAGTGT
TGTGGTCCGCTGTGGTCCACACTATATCACTGTGAATCGCTAATTTAACT
GGTTGGCTCTTGTATTAATTAGTAAGGATATAGTATAGCGCGCCACGTGG
TTGAACTGGTACACCAACGTTCCAGTAGGCGGAGGACCCGGTTTCGAACC
CGGGCAGAGTCGATATTTATTTGTTTATTTTCTCTACCGCCGCCGCGGAA
AGCGCGGCAGCGTGAGTAAGCAAAATCCGATAAATCGGCGAGAGCTACGG
GACTGCCGAACCCAATGCACTCGCGATGAAAACTGAAAACGCAAGGTAAG
ATATAATAGGTGGGATGGTTGATCCCTTATGGCTACAGACGGACCTACCT
CGGAAAAGCTGGTCTATCATACTTTTATGTGTGGAAATAAATAAATCATA
CCAGACGTTAAATTTTTACAAGGAGTACAGTCACGTTAGACTGTATGACG
TCGATATCTCTTACCGCATAACTTTATTTTTATTTTTTGTCGCGGTCGTT
CTGCTTCCCTCTCCTCTTCTTCCCTCTTTTTTTTGTTCTTGTTTTGCTGT
TCCCAGGTCTCCCCGCCGGCCGCAGGACTTCAGCTGCACGCACCCAGATA
GGAAGCACTACGCTAGAGGGCTGTGCGTCAGCTGTTACCAGAGGTGATAA
AACGTGCAAACGGTTTTTCATAGCTTTTGTGTGTACTTGTTTTGTGTGTA
TATACTGTACTCTCATTTTTTTATTGGTTGATTTAGTTGTGATGTGACTC
AGTCGATTCACTATTACATTGTATTTGGGTTCGGGCGTCGCAAACGCAAG
GAAATATGACTACTACTGCTGTGCAGGAGGCTGGTATGATATCATCCTTG
TGTAACGCAGCCTTGCCTGGCCGGCAAAATCCCCGGCATATGGCTCCGCT
CCGTCCCGGCACTGTTGGAATGCGTGTTCTATGACCGCTTGGATACAGAA
CGCGTTAAAAATAAATACCCCTGCCCCCGCCCCCCTCCCCCACCCGACCT
GACTCGACCCGCCCTCAACCCCCACCTCACCCTAACCCCAACGCCAATGG
CCACCCGCACCCCCATCCCCACCCGCATCCCCAACCCCCACCGCCATCCT
CCCAAAAAATATTTTAAGATTCCAAAAACATAGAGCGAGCGTTGGGGTCC
CACCTTTTCAAGAGGAGGGAAGATGGTCCAAGCTACTGCTGTACCTATGT
AGGCTCGCTTGTTACGTATGATGCTGTGGTGTCATGTTCGTGTATGTGAT
CCATCCCCCACTCCCACCCCCCAAACCCCAACCCCAACCCCAACCCCAAC
ACCCAGGTGGCTCCGCAACCGCAACCTCGCCGAGGAAGAAACAGCCGCAG
CAGCCGCTGCCGTCGCCGCCG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig12634:1318..4138+

>mRNA_S-dermatodea_contig12634.1623.1 ID=mRNA_S-dermatodea_contig12634.1623.1|Name=mRNA_S-dermatodea_contig12634.1623.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at S-dermatodea_contig12634:1318..4138+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGTTTTGCAGGAGCGCGTGCTGAGGCTGGAGACCGAGGCATTGGCCTC
AGAGAAGCAAGCCAGCAGCATGTCGGAGCGACAGCGATTCGAGGGGGACG
TCCTTCCCACGATCAACAGGTTTTGCAGGAGCGCGTGCTGAGGCTGGAGA
CCGAGGCATTGGCCTCAGAGAAGCAAGCCAGCAGCATGTCGGAGCGACAG
CGATTCGAGGGGGACGTCCTTCCCACGATCAAGTCTCCCCGCCGGCCGCA
GGACTTCAGCTGCACGCACCCAGATAGGAAGCACTACGCTAGAGGGCTGT
GCGTCAGCTGTTACCAGAGGTCTCCCCGCCGGCCGCAGGACTTCAGCTGC
ACGCACCCAGATAGGAAGCACTACGCTAGAGGGCTGTGCGTCAGCTGTTA
CCAGAGGTGGCTCCGCAACCGCAACCTCGCCGAGGAAGAAACAGCCGCAG
CAGCCGCTGCCGTCGCCGCCGTGGCTCCGCAACCGCAACCTCGCCGAGGA
AGAAACAGCCGCAGCAGCCGCTGCCGTCGCCGCC
back to top