mRNA_S-dermatodea_contig12632.1622.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12632.1622.1
Unique NamemRNA_S-dermatodea_contig12632.1622.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig12632.1622.1 vs. uniprot
Match: D7G204_ECTSI (PPPDE domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G204_ECTSI)

HSP 1 Score: 328 bits (840), Expect = 4.730e-111
Identity = 166/227 (73.13%), Postives = 192/227 (84.58%), Query Frame = 1 
Query:    1 TQVILNVYDLSPINEFGHPIGLGVFHSGLEVDGREYTFAGGGGIFDHDPRKAPGAHFREAIDMGSFSAEPGALRRALDSLRDDFGPDRYNVLTRNCNTFASALCEELLGRPIPAYVNRLAWMGSWFSCLMPPSMLGEAPVNEGGSAS-NAGYSMVVPPGXXXXXXXXXXXXXNRAAFQGSGVTLSGPAGASASTSAVST--SSGGREGELSDRRDRMRAAALRRAEA 672
            T+V LNVYDLSP+NEFGHPIGLGVFHSGLEVDGREYTFAGGGGIFDH+PRKAPGA FREA++MGSF+    +L RA+DSLR++FGPDRYNVLTRNCN+F+SALCEEL+G+PIP YVNRLAWMGSWFSCLMPP MLG+APVN+GGS+S NAGYSM+ PPG             +R AFQGSG+TL+G  G++ +TS  ST  +  GREGELSDRR+RMR AALRRAEA
Sbjct:    9 TEVTLNVYDLSPVNEFGHPIGLGVFHSGLEVDGREYTFAGGGGIFDHEPRKAPGARFREAVNMGSFTGGSSSLSRAIDSLREEFGPDRYNVLTRNCNSFSSALCEELVGKPIPGYVNRLAWMGSWFSCLMPPGMLGDAPVNQGGSSSYNAGYSMLAPPGRSSGPAAVRGGG-SRNAFQGSGMTLAGSGGSAGTTSGSSTGGTGTGREGELSDRRERMRMAALRRAEA 234
[Close]
BLAST of mRNA_S-dermatodea_contig12632.1622.1 vs. uniprot
Match: A0A835Z1G9_9STRA (PPPDE putative peptidase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1G9_9STRA)

HSP 1 Score: 205 bits (522), Expect = 3.520e-63
Identity = 102/196 (52.04%), Postives = 133/196 (67.86%), Query Frame = 1 
Query:    4 QVILNVYDLSPINEFGHPIGLGVFHSGLEVDGREYTFAGGGGIFDHDPRKAPGAHFREAIDMGSFSAEPGALRRALDSLRDDFGPDRYNVLTRNCNTFASALCEELLGRPIPAYVNRLAWMGSWFSCLMPPSMLGEAPVNEGGSASNAGYSMVVPPGXXXXXXXXXXXXXNRAAFQGSGVTLSGPAGASASTSAVS 591
            +V+LNVYDL+  NE+ H  G G++HSG+++ G+EYTFAGGGGIF H+P+ APGA FR ++ MG+F+    A+  A+ SLR DFGPD Y++L RNCN+F++A CE LL +PIPA+VNR AWMGSWFSCL+PP MLG+APVN+      +G      P                AAF GSGV+L G AG  AS +  S
Sbjct:   13 EVLLNVYDLNEANEYLHSTGFGLYHSGVQIGGKEYTFAGGGGIFSHEPKDAPGARFRCSVSMGTFTGGQAAIDDAIASLRGDFGPDAYHILCRNCNSFSNAFCEALLNKPIPAWVNRAAWMGSWFSCLVPPQMLGQAPVND-----LSGVPARATPAY--------------AAFGGSGVSLGGTAGGGASAAVPS 189
[Close]
BLAST of mRNA_S-dermatodea_contig12632.1622.1 vs. uniprot
Match: W7U9V7_9STRA (PPPDE domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U9V7_9STRA)

HSP 1 Score: 184 bits (466), Expect = 9.060e-55
Identity = 85/149 (57.05%), Postives = 113/149 (75.84%), Query Frame = 1 
Query:    1 TQVILNVYDLSPINEFGHPIGLGVFHSGLEVDGREYTFAGGGGIFDHDPRKAPGAHFREAIDMGSFSAEPGALRRALDSLRDDFGPDRYNVLTRNCNTFASALCEELLGRPIPAYVNRLAWMGSWFSCLMPPSMLGEAPVNEGGSASNA 447
            T V LNVYDL   N + HP+G+GV+H+G+E+ G EYT+AGG GIF   PR APGA FRE+I +G+    P ALRRAL++LR DFGPD Y+++  NCN F++AL  ELLG+PIPAYVNRLA+ GS+FSC +P  M  +APV++ G+++ A
Sbjct:   14 TMVYLNVYDLHAANRYAHPLGMGVYHTGVEIAGSEYTYAGGAGIFAMYPRVAPGATFRESIPLGTVLDAPRALRRALEALRSDFGPDDYSLVKLNCNHFSAALVMELLGKPIPAYVNRLAFFGSFFSCFLPVEMTSQAPVSQEGNSTGA 162
[Close]
BLAST of mRNA_S-dermatodea_contig12632.1622.1 vs. uniprot
Match: A0A7S2BXA3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BXA3_9STRA)

HSP 1 Score: 183 bits (465), Expect = 1.490e-54
Identity = 88/151 (58.28%), Postives = 109/151 (72.19%), Query Frame = 1 
Query:    1 TQVILNVYDLSPINEFGHPIGLGVFHSGLEVDGREYTFAGGGGIFDHDPRKAPGAHFREAIDMGSFSAEPGALRRALDSLRDDFGPDRYNVLTRNCNTFASALCEELLGRPIPAYVNRLAWMGSWFSCLMPPSMLGEAPVNE--GGSASNA 447
            T V+LNVYDLS  NE G+  GLG +HSG+E+  REYTFAGG GIFD  PR APGA FRE+I +G+F    GAL RALD L+  F P  YNV+T+NCN F+ AL  +LL  PIP +VNRL+ +G+ FSCL+PP +LG++PVN   GG  S A
Sbjct:   27 TSVVLNVYDLSEANELGYSCGLGAYHSGVEIGDREYTFAGGAGIFDTTPRDAPGARFRESITLGTFEGGQGALSRALDELKPFFDPSSYNVITKNCNHFSDALSRQLLDTPIPGWVNRLSNIGNCFSCLIPPQLLGQSPVNAPGGGGGSQA 177
[Close]
BLAST of mRNA_S-dermatodea_contig12632.1622.1 vs. uniprot
Match: A0A7S2XZ08_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZ08_9STRA)

HSP 1 Score: 181 bits (459), Expect = 1.550e-54
Identity = 84/151 (55.63%), Postives = 113/151 (74.83%), Query Frame = 1 
Query:    4 QVILNVYDLSP-INEFGHPIGLGVFHSGLEVDGREYTFAGGGGIFDHDPRKAPGAHFREAIDMGSFSAEPGALRRALDSLRDDFGPDRYNVLTRNCNTFASALCEELLGRPIPAYVNRLAWMGSWFSCLMPPSMLGEAPVNEGGSASNAGY 453
            +VILNVYDLS  +N++  P G G+ HSG+EV GREY+FA G GIFD  PR+AP A FREAI++G+       ++RAL +L  +FGPD+Y++L +NCN+FA A C+EL+GR IP +VNRLA+MGS FSCL+PP  LGEAPV     + ++G+
Sbjct:   17 KVILNVYDLSQEVNQYAAPFGFGLHHSGVEVGGREYSFASGAGIFDSTPRQAPNAVFREAIEIGAVEDGEAGVQRALSNLEAEFGPDKYHILNKNCNSFADAFCQELVGRGIPGWVNRLAYMGSMFSCLIPPEYLGEAPVGAEPMSQSSGF 167
[Close]
BLAST of mRNA_S-dermatodea_contig12632.1622.1 vs. uniprot
Match: K0RSF7_THAOC (PPPDE domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RSF7_THAOC)

HSP 1 Score: 184 bits (466), Expect = 1.550e-53
Identity = 108/229 (47.16%), Postives = 138/229 (60.26%), Query Frame = 1 
Query:    1 TQVILNVYDLSPINEFGHPIGLGVFHSGLEVDGREYTFAGGGGIFDHDPRKAPGAHFREAIDMGSFSAEPGALRRALDSLRDDFGPDRYNVLTRNCNTFASALCEELLGRPIPAYVNRLAWMGSWFSCLMPPSMLGEAPVNEGGSASNAGYSMVVPPGXXXXXXXXXXXXXNRAAFQGSGVTLSGPAGASASTSAVSTSSGGREGE------LSDRRDRMRAAALRRAE 669
            T VILNVYDLSP NE+   +GLG+ HSG+EV GREY+FA GGG+FD  P++APGA FRE+I++G F      L  A+  LR++FGPDRYN++ RNCN FA+AL   LLGR IP +VNRLA  G+  SCL+P  +L EAPV  GG + N     V  P                A F GSG TL  P+       ++  S  GR  +      L+DRR++ + AAL R E
Sbjct:  106 TSVILNVYDLSPANEYLCSVGLGLHHSGVEVLGREYSFASGGGVFDSSPKEAPGAKFRESIELGHFEGGSAELNAAIGDLREEFGPDRYNLIRRNCNHFANALVWRLLGRTIPGHVNRLADYGNCCSCLIPRKLLEEAPVGPGGGSGNGSSYQVFSP----------KKQDTPAVFSGSGHTLGAPS--QEGRMSLLGSWRGRASQKKAQESLTDRREKAKRAALARME 322
[Close]
BLAST of mRNA_S-dermatodea_contig12632.1622.1 vs. uniprot
Match: A0A7S1YZ49_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YZ49_TRICV)

HSP 1 Score: 172 bits (437), Expect = 2.730e-51
Identity = 79/150 (52.67%), Postives = 106/150 (70.67%), Query Frame = 1 
Query:    1 TQVILNVYDLSPINEFGHPIGLGVFHSGLEVDGREYTFAGGGGIFDHDPRKAPGAHFREAIDMGSFSAEPGALRRALDSLRDDFGPDRYNVLTRNCNTFASALCEELLGRPIPAYVNRLAWMGSWFSCLMPPSMLGEAPVNEGGSASNAG 450
            T+V+LN+YDL+P NE+ +PIG G+ HSG+E+ G EY+FA G G+FD  PR+APGA FRE++++G++    G  R  +D LR  FGP  YN+L RNCN FA ALC  LLGR IPA++NRLA +G   SCL+P S+L ++PV  G      G
Sbjct:   12 TKVMLNLYDLTPANEYLYPIGFGLHHSGVEIGGTEYSFASGAGVFDSTPREAPGARFRESVELGTYEGGSGDARVVIDDLRSSFGPSDYNLLKRNCNHFADALCWALLGRRIPAHINRLADIGVCLSCLLPRSVLEDSPVGPGAERGGNG 161
[Close]
BLAST of mRNA_S-dermatodea_contig12632.1622.1 vs. uniprot
Match: W2M287_PHYPR (PPPDE domain-containing protein n=8 Tax=Phytophthora TaxID=4783 RepID=W2M287_PHYPR)

HSP 1 Score: 172 bits (436), Expect = 1.770e-50
Identity = 96/221 (43.44%), Postives = 123/221 (55.66%), Query Frame = 1 
Query:    1 TQVILNVYDLSPINEFGHPIGLGVFHSGLEVDGREYTFAGGGGIFDHDPRKAPGAHFREAIDMGSFSAEPGALRRALDSLRDDFGPDRYNVLTRNCNTFASALCEELLGRPIPAYVNRLAWMGSWFSCLMPPSMLGEAPVNEGGSASNAGYSMVVPPGXXXXXXXXXXXXXNRAAFQGSGVTLSGPAGASASTSAVSTSSGGREGELSDRRDRMRAAALRR 663
            T V LN+YDL   NEF  P+G G+FHSG+E+ G E+++A G G+F   PR+APGA FRE+IDMG F        R   SL  DF  D YN+ TRNCNT+A ALC+ LL +PIP YVNR A++GS+ SCLMP  +  +APV +  + S                            F GSG T+          S V  SS      L+DRR+++R AALRR
Sbjct:    5 TAVTLNIYDLVEANEFMAPLGFGIFHSGVEIAGEEFSYASGAGVFSSSPRQAPGAKFRESIDMGFFEGTSQEAHRLAYSLSPDFEGDAYNLFTRNCNTYADALCQLLLNKPIPGYVNRAAYLGSFLSCLMPADLTDQAPVGDPSTPSRI------------TNGTPRRSDFIYTPFAGSGQTVG---------STVDASSSSESSTLADRREKVRLAALRR 204
[Close]
BLAST of mRNA_S-dermatodea_contig12632.1622.1 vs. uniprot
Match: M4BSD0_HYAAE (PPPDE domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BSD0_HYAAE)

HSP 1 Score: 172 bits (435), Expect = 2.290e-50
Identity = 100/227 (44.05%), Postives = 134/227 (59.03%), Query Frame = 1 
Query:    1 TQVILNVYDLSPINEFGHPIGLGVFHSGLEVDGREYTFAGGGGIFDHDPRKAPGAHFREAIDMGSFSAEPGALRRALDSLRDDFGPDRYNVLTRNCNTFASALCEELLGRPIPAYVNRLAWMGSWFSCLMPPSMLGEAPVNEGGSAS----NAGYSMVVPPGXXXXXXXXXXXXXNRAAFQGSGVTLSGPAGASASTSAVSTSSGGREGELSDRRDRMRAAALRRAE 669
            T V LNVYDL   NE+  P+GLG+FHSG+E+ G+E+++A G G+F   P++APGA FRE+IDMG F        R   SL  D+  D YN+L RNCNT+A A C+ LLG+PIPAYVNR+A++GS+ SCL+P  M   APV +  S S    N     V  P                  F GSG ++ G    S+ST + +         L+DRR+++R AALRR+E
Sbjct:    5 TAVTLNVYDLVEANEYMAPLGLGIFHSGVEIAGKEFSYASGTGVFSSIPKQAPGAKFRESIDMGFFEGSFQEAHRLAYSLSSDYTGDVYNLLNRNCNTYADAACQLLLGKPIPAYVNRMAYLGSFLSCLIPVGMTARAPVGDDVSTSSRITNGTPQRVYIP------------------FTGSGKSIGGTKDTSSSTGSSA---------LADRREKVRLAALRRSE 204
[Close]
BLAST of mRNA_S-dermatodea_contig12632.1622.1 vs. uniprot
Match: A0A1V9ZG04_9STRA (PPPDE domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZG04_9STRA)

HSP 1 Score: 171 bits (432), Expect = 7.100e-50
Identity = 99/225 (44.00%), Postives = 137/225 (60.89%), Query Frame = 1 
Query:    1 TQVILNVYDLSPINEFGHPIGLGVFHSGLEVDGREYTFAGGGGIFDHDPRKAPGAHFREAIDMGSFSAEPGALRRALDSLRDDFGPDRYNVLTRNCNTFASALCEELLGRPIPAYVNRLAWMGSWFSCLMPPSMLGEAPVNEGGSASNAGYSMVVPPGXXXXXXXXXXXXXNRAAFQGSGVTLSGPAGASASTSAVSTSSGGREGELSDRRDRMRAAALRRAEAA 675
            T VILNVYDL   N + H +G G FHSGL+V G EY+FAGG GIF   P++A GA FRE+I MG F       RR ++SLR DF    YN+LT+NCNTFA+  C +LLG PIP+Y+NR+A+ GS+ SCL+P  + G APV EG ++ +   +   P               +  A+ G+G++L+G      ++SA  T     E +   RR++ RAAA++R E+A
Sbjct:    7 TAVILNVYDLMEANAYTHALGFGAFHSGLDVGGDEYSFAGGAGIFTCRPKQADGAVFRESIHMGYFDGSSMDARRVIESLRSDFQGSHYNLLTKNCNTFANEACLQLLGIPIPSYINRMAYFGSFLSCLLPKELAGNAPV-EGSTSLSYSNTPSQP---------------SYQAYGGNGISLNG------TSSATMT-----EDDAEIRREKRRAAAMKRLESA 204
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12632.1622.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G204_ECTSI4.730e-11173.13PPPDE domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A835Z1G9_9STRA3.520e-6352.04PPPDE putative peptidase domain-containing protein... [more]
W7U9V7_9STRA9.060e-5557.05PPPDE domain-containing protein n=2 Tax=Monodopsid... [more]
A0A7S2BXA3_9STRA1.490e-5458.28Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2XZ08_9STRA1.550e-5455.63Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
K0RSF7_THAOC1.550e-5347.16PPPDE domain-containing protein n=1 Tax=Thalassios... [more]
A0A7S1YZ49_TRICV2.730e-5152.67Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
W2M287_PHYPR1.770e-5043.44PPPDE domain-containing protein n=8 Tax=Phytophtho... [more]
M4BSD0_HYAAE2.290e-5044.05PPPDE domain-containing protein n=1 Tax=Hyaloperon... [more]
A0A1V9ZG04_9STRA7.100e-5044.00PPPDE domain-containing protein n=1 Tax=Thraustoth... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12632contigS-dermatodea_contig12632:461..6332 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score331.3
Seed ortholog evalue3.7e-88
Seed eggNOG ortholog2880.D7G204
EggNOG free text desc.Lys63-specific deubiquitinase activity
EggNOG OGsKOG0324@1,KOG0324@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPPPDE putative peptidase domain
Ec32 orthologEc-07_003470.1
Exons4
Model size684
Cds size684
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12632.1622.1prot_S-dermatodea_contig12632.1622.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12632 461..6332 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924256.1533113-CDS-S-dermatodea_contig12632:460..6121622924256.1533113-CDS-S-dermatodea_contig12632:460..612Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12632 461..612 -
1694079129.4479146-CDS-S-dermatodea_contig12632:460..6121694079129.4479146-CDS-S-dermatodea_contig12632:460..612Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12632 461..612 -
1622924256.1622274-CDS-S-dermatodea_contig12632:2918..30831622924256.1622274-CDS-S-dermatodea_contig12632:2918..3083Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12632 2919..3083 -
1694079129.4606113-CDS-S-dermatodea_contig12632:2918..30831694079129.4606113-CDS-S-dermatodea_contig12632:2918..3083Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12632 2919..3083 -
1622924256.192136-CDS-S-dermatodea_contig12632:4146..43591622924256.192136-CDS-S-dermatodea_contig12632:4146..4359Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12632 4147..4359 -
1694079129.4692705-CDS-S-dermatodea_contig12632:4146..43591694079129.4692705-CDS-S-dermatodea_contig12632:4146..4359Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12632 4147..4359 -
1622924256.2009437-CDS-S-dermatodea_contig12632:6178..63321622924256.2009437-CDS-S-dermatodea_contig12632:6178..6332Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12632 6179..6332 -
1694079129.4858236-CDS-S-dermatodea_contig12632:6178..63321694079129.4858236-CDS-S-dermatodea_contig12632:6178..6332Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12632 6179..6332 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12632.1622.1

>prot_S-dermatodea_contig12632.1622.1 ID=prot_S-dermatodea_contig12632.1622.1|Name=mRNA_S-dermatodea_contig12632.1622.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=228bp
TQVILNVYDLSPINEFGHPIGLGVFHSGLEVDGREYTFAGGGGIFDHDPR
KAPGAHFREAIDMGSFSAEPGALRRALDSLRDDFGPDRYNVLTRNCNTFA
SALCEELLGRPIPAYVNRLAWMGSWFSCLMPPSMLGEAPVNEGGSASNAG
YSMVVPPGRAAASSTAGGGGGNRAAFQGSGVTLSGPAGASASTSAVSTSS
GGREGELSDRRDRMRAAALRRAEAAAS*
back to top

mRNA from alignment at S-dermatodea_contig12632:461..6332-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12632.1622.1 ID=mRNA_S-dermatodea_contig12632.1622.1|Name=mRNA_S-dermatodea_contig12632.1622.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5872bp|location=Sequence derived from alignment at S-dermatodea_contig12632:461..6332- (Saccorhiza dermatodea SderLu1190fm monoicous)
ACGCAGGTTATCCTCAATGTGTACGACCTGAGTCCCATCAACGAATTCGG
CCACCCTATAGGCTTGGGGGTGTTCCACAGCGGTCTGGAGGTGGACGGGC
GAGAGTACACCTTCGCCGGCGGGGGGGGCATCTTCGACCACGACCCCAGA
AAAGGTACACCCCGACCCCCCACCCCAGAAAAGGTACAATTCAACGCACC
AATATAGCTTGATAGCTTGGGGGGGGAATCGACCAAAAATCCCAGAAAAG
GTACACCACGATCCTCCACCCAAAAAGGTATAATGTAACGCACCAATATA
GCTTGGGGGTGGGGGTTCGACCAAAAACCACAGAAAAGGTACACCCCGAC
CCTCCACCCAGAAAAGGTACAATGTAACGCACAAATGTTCGACCACGACC
CCCAGAAAAGCTATACAGTAGTGTATGTCACGCCTTCAAAAAAGCTTAGG
GGGGGGGCAAATAAGGGTGGGTATAATAGTATAATAGTACAGGCTCGAAT
ACAAGTTGAAAATAATATCACAACTTAAAACAACCCATTCCTAGAGTTAC
CTATTACTTAAAACTATTACTTAAAACAACCCATTCCTAGAGTTACCTAT
TGATTTTAATGTGACACGAGAGCATCGTATATCGTATATAATGTAGGCTT
CCACTGAGTTACTATAGTTCGATTGGGCCATCTGTTTTCCTCTATTAATA
CCAAAAGTGATTGGTTGGACCCCCATGCTTATTCCGTGTTCATGAATATT
CATTATACTGTCTTCAGGGGATTTTCGACCACAACCCCCAGAAAAAGGTA
CATCAGTCTCCTCCCCCCCCGATAAAGGGCACATATAGTGGAAAGTGAGG
CCAGGTCGGCGGTCCGTACGCGGAGATCCAAGTCCCTTGGCTGTACTGGG
AGCATAGTCTAGTCACTCACTCCTCCTGACTGTGCAACCATGGGTTACCC
GGTATGTCCAATCAATCCATGGCATATCGGTTGGCGTCGCAAACGCAAAG
ATGATGGCTATGATAGCAGCGGGTGTCATCCTTGTGAAACGCAGCCTGGT
CGGCGAAAACCCGGCATATCGCTCCGCCCGGGCATTGTTGGGACGCGTGG
TCGATGTCCGTTTGGGTACGACATGAGTTCAATGCGATTACTCCCTCACA
AGTACAAATACGATTGGGGCTCCGAGGAGTTTGAAGACAGTGTCCATGTA
GTGGCGGAATGCCTATTTTATGAAAAAGGATAGAGAAGTATACATACATA
CAAATGGCTAAGCTAAGAAAAATTAAAGGCTGTGACAGAGACTTTTGAAG
CATGGAAAAAGAGTCAGGCGAAGGCAGTAAGTACGCTGTAGCTATATACT
GGGGTGAACAAGAAGTGGCCTGAGAAAGCGACAAGTTTTGTAGACGCGAT
AGGAAAAGCAATTTTGCGCCTCCTTTGGCAGAGAAGGAAGGTACGATTGG
CCATCGGCGATAGATAGATCGATCCTGTGGGAACAATGATCCGTCCTCTC
GAGGACACGTGGTCAATGGTCTAATAGCTAAGGCATGCAAAACATGAGTA
CGCCCTCCACCATCCAACCTTAACTCCGCACAAGGGGGATGATCGTACCA
CGCAGTGTTGAAATGGTGAGGCACCCACGAGGCAGTGTAACCCATGGCTG
ACTCTGGAGGTGGCGACACCAGATAATACAGCAACTCATTCAAGGCTGTC
GTCCATATGCAACATTACCCAGTACGGTCTAGGCCGGGCACTCTTACTTA
GCAGGATGCAGCTCACCGTTCATGCGACTCGCCGAAGACATCACGGCGCT
CCGCGCTTGGTGAATGCGAGCCTGGTCCGGCGAAAACCCGGCGTGCTCCG
TCCCGGCTTTGTAGGGATGCGAGGTCGAGGTATATGTATATGGTCTAACG
ACTACCGCATGCATAACATTGCGTACACCCCCCCCCCCCCGTCACCTCCC
GAACCCTTGTACCGTAAATTTAGCCCCTGGCGCGCATTTTCGGGAGGCTA
TTGACATGGGCTCTTTTTCGGCGGAGCCCGGGGCGCTAAGGCGAGCCTTG
GACTCGTTGCGGGATGATTTTGGGCCGGACCGGTATAACGTTTTGACGAG
AAACTGCAACACTTTCGCGTCAGCTTTGTGCGAAGAGCTCCTGGGGAGGC
CCATCCCGGCCTACGTGAACCGACTCGCTTGGATGGGTGAGAAAGCGCCC
GTTTTTGTTGGGTTTTTTTCGCGAATGCATTGGGTTCGGCACACCCGCAG
CGCTCGCCGATGATTCTTGGACTTTGATTCATTACGCACGTTGTCGCGCT
TTCCGCGGCGGGAGGTATCATGCTGTAGACAACAAATTATTATCGACCCT
GCCCCGGATTCGAACCCAGGTCCTCCACCTTAGCTTACTGGGCGTTGGTG
TACCGTTTCAAATATGTGTTTTTTTTTTCATATAAAACAAAATTTAGTTC
ATGTACATCCCTAGCTATCGTAGTTCAAGGGGAAACCGAACGTAAGAATT
TGTACATCCTTTTACTCTCGCGCTGCTCGGTAAGGCACATGTGCATAGCT
TAGTTTTTAGGCAATTTATTGACCACGCGTCCTCGGGAGGACGGAGCTTT
TGTCCTAATACTTAAGGAACACTTAATATGATTGGCTCATAAAAACGCAG
CAAAGATATATCACCAGGATATACCTCAGGACAAAGACTCATTATGTCCT
GTATGATGCCATGACCATATAACATCATACATGATAAGACGCCATAGCAT
CATATGTACTTGTAACAAGTGAGCCTGCCTCCATAGGTGTAGCTTGGACC
ATCTTCCCTCTTGAAAGGTGGCACCCCAACGCTCGCTCTCTGTTTCTGAA
ATATTTAGTTTTTTAGGGGGGGTACTCAAGTTTAGCAAAACTTGGTTTTT
ATATACAAGTATACTACTTGTAGAATCATATTATTCACATGTACATGCCT
AACTCACAGGCACACTACACTAGTTCCAGGCGAAAACCGAAAGTAGGTAC
GTTTAGTAAGGTATAGGTGCAAGAGGGAATAATATAACATTATATTACAC
ACAGTATAACAGTAGTGTTAATAGTGAACTGTTATAGGGCTTAAACATCG
CGCGACAAGATTAGCACAGCCTCCAAATCGCGAGTCATCATGAATCCCCG
CGTATAGATGTACCACCGGCCAATATAAATTATCGGGGGGATATGCACAC
GTATCTCCTTTCTCTCCTCACACACCATCCCCGCCCCCTTTTCGTCCAGG
TTCTTGGTTCTCGTGCCTGATGCCGCCGAGCATGCTGGGAGAGGCCCCCG
TTAACGAGGGTGGGTCGGCCTCGAACGCGGGATACTCCATGGTAGTGCCG
CCGGGACGGGCTGCTGCATCTTCCACGGCGGGGGGCGGGGGCGGGAATCG
TGCCGCGTTTCAAGGTGAACTTATGTACTTCGTATGCTCTTTGTTCTTGT
ATGTAAGACAAACCACGCGCCCCGAGGTTGAACTGGTGGACCAACAGCCC
AGTAAGTGCAGGACCCGGGTTCGAATCCCGGCGGAGTCGATATTTATTTA
TTTTCTCTATCTCCGCCGCGAANNNNNNNNNNGATGGACCTCGGAAAAGA
AAGTCTATCATATGCGTGCCAAAAAAATACAAAAATAAAATATAAGGTGT
GTTATTATGTTTGGTATCATACAGTTAACTCTTTTGGCACTAGGGCTCTC
CGCTCCGAAGCGATCAAAGCCTCTCTATTAATAGATACCAGTTGACAAGC
TACATTTACATGCCCGTTTCCCCTTGGGCTCCGTTTTTTTCTCTCAGTCC
TGCGTCATAAGCCATGCGGATCCCCAGAGCCCCGCTTCAAGCACGCCTCA
TTACGTGCTAACCGGCGGTCCAAACAGTGTAGTGGGCTACTGTAGTACCA
AAAGGGCCTAACTGCGCGCCCCGTGGTTGAACTGGTTGACCAATAACCCA
GTAGGGCGGAGTGAGGACCCGGGTTCGAATCCCGGCAGAATCGTTTTTTG
TTGTTTTCTGTACCTCCGCCGCGGAAAACGCGACAGCGTGAGTAAGCAAA
ATCCGAGAAGTCGGCGAGCTGCGGGAGTGCCGAACCCAGTGCATTCGCGA
TAAAAATCAAAGGTGATAAGATACCGGGGATAAAATAAGAGAGATGGGAT
GATCAATCCCTTGTGACCACAGACGTACCTACATCGGAAAAGCAAGTCTT
ACAAGTATCATATGTGTGTGTGAAAAAAAAAAAAGTGTTGTTATGTGTGG
TACTGTGTTCTGCTTATTGTAGTACAAGTACACTTTTTGGGACATGTGAC
CCCGATCGATTATTTTGCTATTTTTGATTGATTGATTGAGTGATTGATTG
ATCGATTTATTGATCGATTGATTGATTGATTGATTGATTGGTTGATTGAT
TGATTGATTGATTGATTGAGTGATTGATTGATTGATTGATTGAGTGATTG
AGTGATTGATTGATGGATTGATTGATTGATTGATTGATTGATTTATTGAT
CGATTGATTGATTGATTGATTGATTGATTTGATTTGATTTGCACACGTAC
AGCCGATCGGCTTAATCCGACCTATCCGACTTGTGGTCACATACTATTCT
ATAGAATATCGTATAGCAATTAGTCAAGGAGAAGACAACGTGCTCTTGTG
TGCACCTCCGTAATATCAACAGAGTAGCAGAATATGTGGATACCAGATCC
CCCCTCGAGATGGCAATTCCCTTGAGGACGTAAAAGTGCAGACGACGCCT
CCTTACACGGGTACACCACCTCCCCGCGGGACAGACATACACTCTTGCCT
CGTGGCTGTGCTCTCGCGGGTGCGGTCGGTTGCTCAAGACCACCCTCGGC
TTGTCCAAGACCCCACCTCGGTGTGTACTCCACTCCACTCCACGCCACCC
ATCACAAAGATGATATGCCTGCCCAAGGCATTGCCTCATACTTTGGGCTC
TCCCCGCACTACAACCCACACACACGTACTATATTATTAAATAATGCAAC
AACGACCGATTGTGTATATTGAGTGTAGAGAAGGATGGTGTCTGATGCCA
AACAACTTGATGTTTGTATTGAGCATATTTTTTTTTTTGTAAATGCGAAA
ACACAGCAGCAGCGACACGCGCAGGCAGCAGCGACACGCACAGTATGATA
GCTCGACCGCGTTCGACCTCCGTGTCGCGTTCCGTCGGCATATCGTCCTG
CCAACGCATACCTCACCCGGGCGTAGCCGTGGCTGTTATACCCACTATTA
CTACTTCGAACTATCATATTACGGAGGAGCATTATCAACGTTAACAGGTC
CAAATCTCATAGCCAATAATACAATACCCCAACTATTCCAACTATTTTTA
CCATGAATTACCCAAACAACAAAATCTCGTGAAAAACAAAAAACACGACA
TTATGGCCATATTCACGAACATCGACCTTAAAATCTCGATGATTCCATTA
ATAGCCTATTTTCATTTTTCTAGGTTGAGACAGACTTGTGGCAAAAAAAA
TTGACCTGTTAACTATGGTCCTCCGTAAAATCAATATTAATAGTAATAGT
AATAGTAATAGTAATAGTAATATTAATATTAATAGCACACATCAATCATC
CGTGATATTAAAATTAATATTAGTAATAATAGCACACATCAATCATCCGT
GATATTAAAGTTAATAGTAATATTAATAGCACACATCAATCATCCGTGAC
CCTTGCCTTGCTTCCCGCAGGCTCGGGCGTGACGTTGTCGGGCCCCGCGG
GAGCTTCTGCGAGCACGTCCGCGGTATCCACCAGCAGCGGGGGCCGCGAG
GGAGAGCTCTCCGACAGAAGGGATCGGATGCGCGCGGCGGCATTGCGGCG
GGCCGAGGCCGCGGCCTCATGA
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig12632:461..6332-

>mRNA_S-dermatodea_contig12632.1622.1 ID=mRNA_S-dermatodea_contig12632.1622.1|Name=mRNA_S-dermatodea_contig12632.1622.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1368bp|location=Sequence derived from alignment at S-dermatodea_contig12632:461..6332- (Saccorhiza dermatodea SderLu1190fm monoicous)
ACGCAGGTTATCCTCAATGTGTACGACCTGAGTCCCATCAACGAATTCGG
CCACCCTATAGGCTTGGGGGTGTTCCACAGCGGTCTGGAGGTGGACGGGC
GAGAGTACACCTTCGCCGGCGGGGGGGGCATCTTCGACCACGACCCCAGA
AAAGACGCAGGTTATCCTCAATGTGTACGACCTGAGTCCCATCAACGAAT
TCGGCCACCCTATAGGCTTGGGGGTGTTCCACAGCGGTCTGGAGGTGGAC
GGGCGAGAGTACACCTTCGCCGGCGGGGGGGGCATCTTCGACCACGACCC
CAGAAAAGCCCCTGGCGCGCATTTTCGGGAGGCTATTGACATGGGCTCTT
TTTCGGCGGAGCCCGGGGCGCTAAGGCGAGCCTTGGACTCGTTGCGGGAT
GATTTTGGGCCGGACCGGTATAACGTTTTGACGAGAAACTGCAACACTTT
CGCGTCAGCTTTGTGCGAAGAGCTCCTGGGGAGGCCCATCCCGGCCTACG
TGAACCGACTCGCTTGGATGGCCCCTGGCGCGCATTTTCGGGAGGCTATT
GACATGGGCTCTTTTTCGGCGGAGCCCGGGGCGCTAAGGCGAGCCTTGGA
CTCGTTGCGGGATGATTTTGGGCCGGACCGGTATAACGTTTTGACGAGAA
ACTGCAACACTTTCGCGTCAGCTTTGTGCGAAGAGCTCCTGGGGAGGCCC
ATCCCGGCCTACGTGAACCGACTCGCTTGGATGGGTTCTTGGTTCTCGTG
CCTGATGCCGCCGAGCATGCTGGGAGAGGCCCCCGTTAACGAGGGTGGGT
CGGCCTCGAACGCGGGATACTCCATGGTAGTGCCGCCGGGACGGGCTGCT
GCATCTTCCACGGCGGGGGGCGGGGGCGGGAATCGTGCCGCGTTTCAAGG
TTCTTGGTTCTCGTGCCTGATGCCGCCGAGCATGCTGGGAGAGGCCCCCG
TTAACGAGGGTGGGTCGGCCTCGAACGCGGGATACTCCATGGTAGTGCCG
CCGGGACGGGCTGCTGCATCTTCCACGGCGGGGGGCGGGGGCGGGAATCG
TGCCGCGTTTCAAGGCTCGGGCGTGACGTTGTCGGGCCCCGCGGGAGCTT
CTGCGAGCACGTCCGCGGTATCCACCAGCAGCGGGGGCCGCGAGGGAGAG
CTCTCCGACAGAAGGGATCGGATGCGCGCGGCGGCATTGCGGCGGGCCGA
GGCCGCGGCCTCATGAGCTCGGGCGTGACGTTGTCGGGCCCCGCGGGAGC
TTCTGCGAGCACGTCCGCGGTATCCACCAGCAGCGGGGGCCGCGAGGGAG
AGCTCTCCGACAGAAGGGATCGGATGCGCGCGGCGGCATTGCGGCGGGCC
GAGGCCGCGGCCTCATGA
back to top