mRNA_S-dermatodea_contig12631.1621.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12631.1621.1
Unique NamemRNA_S-dermatodea_contig12631.1621.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12631.1621.1 vs. uniprot
Match: D7G2F8_ECTSI (DNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2F8_ECTSI)

HSP 1 Score: 230 bits (587), Expect = 2.410e-71
Identity = 115/174 (66.09%), Postives = 134/174 (77.01%), Query Frame = 1 
Query:    1 RYEDLRERMHRSEAAEIETFVKTVAESLCPGVRCQACGSYRRGKETCGDVDVLICPPEGQEDCSIMLDLLDELRSSGFLTDDLAMPK-PHEPGHSQSYMGVCKLSGEGRKYRRVDIKLYPTSMFGFAVLYFTGSGHFNCSMRYYAKMKGLSLSDKSLKAVNRVEGKKIHSFPSY 519
            R+ED+ +RM RSEAAEIE  V  VA+S+CPGV CQACGSYRRGK  CGDVDVLI PPEGQED  +  DL+  L  +GF+TD L +   PH PG SQS+MG+CKL G GR +RRVDIK YPTS+F FAVLYFTGS HFN SMR +AK+KGL LSDK L  VN V G+++H FPSY
Sbjct:  176 RHEDIMQRMPRSEAAEIEAVVTKVAQSICPGVICQACGSYRRGKSHCGDVDVLIRPPEGQEDSPMFDDLIKRLVETGFITDKLTLAGGPHRPGKSQSFMGICKLPGTGRLHRRVDIKFYPTSLFAFAVLYFTGSSHFNRSMRSFAKIKGLKLSDKGLCRVNTVNGEEVHRFPSY 349
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BLAST of mRNA_S-dermatodea_contig12631.1621.1 vs. uniprot
Match: A0A6H5JHQ3_9PHAE (DNA polymerase lambda n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ3_9PHAE)

HSP 1 Score: 222 bits (565), Expect = 1.680e-64
Identity = 112/174 (64.37%), Postives = 133/174 (76.44%), Query Frame = 1 
Query:    1 RYEDLRERMHRSEAAEIETFVKTVAESLCPGVRCQACGSYRRGKETCGDVDVLICPPEGQEDCSIMLDLLDELRSSGFLTDDLAMP-KPHEPGHSQSYMGVCKLSGEGRKYRRVDIKLYPTSMFGFAVLYFTGSGHFNCSMRYYAKMKGLSLSDKSLKAVNRVEGKKIHSFPSY 519
            R+ED+ +RM RSEAAEIE  V  VA+S+CPG    ACGSYRRGK  CGDVDVLI PPEGQED  +  DL+  L  +GF+TD L +   PH+PG SQS+MG+CKL G+GR +RRVDIK YPTS+F FAVLYFTGS HFN SMR +AK+KGL LSDK L  VN V G+++H FPSY
Sbjct:  652 RHEDITQRMPRSEAAEIEAVVTRVAQSICPG----ACGSYRRGKSHCGDVDVLIRPPEGQEDSPVFDDLIKRLVETGFITDKLTLAGSPHKPGKSQSFMGICKLPGKGRLHRRVDIKFYPTSLFAFAVLYFTGSSHFNRSMRSFAKIKGLKLSDKGLCRVNTVNGEEVHRFPSY 821
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BLAST of mRNA_S-dermatodea_contig12631.1621.1 vs. uniprot
Match: D7G2F7_ECTSI (DNA polymerase lambda n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2F7_ECTSI)

HSP 1 Score: 219 bits (557), Expect = 6.570e-64
Identity = 108/168 (64.29%), Postives = 134/168 (79.76%), Query Frame = 1 
Query:    1 RYEDLRERMHRSEAAEIETFVKTVAESLCPGVRCQACGSYRRGKETCGDVDVLICPPEGQEDCSIMLDLLDELRSSGFLTDDLAMPK-PHEPGHSQSYMGVCKLSGEGRKYRRVDIKLYPTSMFGFAVLYFTGSGHFNCSMRYYAKMKGLSLSDKSLKAVNRVEGKKI 501
            R+ED+++RM RSEAAEIE  V  VA+S+CPGV CQACGSYRRGK  CGDVDVLI PPEGQED  + L+L+ EL  +GF+TD LAMP+ P+ PG  Q++MGVCKL GEG+ +RR+D+KLYPTSMF FAVLYFTGSG FN +MR +AK KGL L+DK L  V+   G+++
Sbjct:  435 RHEDIKQRMPRSEAAEIEAAVTKVAQSICPGVICQACGSYRRGKSNCGDVDVLIRPPEGQEDSPMFLELIKELTETGFITDRLAMPEGPYTPGKPQTFMGVCKLPGEGQIHRRLDVKLYPTSMFAFAVLYFTGSGDFNMNMRCFAKSKGLKLNDKGLFKVDPFSGEEV 602
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BLAST of mRNA_S-dermatodea_contig12631.1621.1 vs. uniprot
Match: A0A6H5JQ91_9PHAE (DNA polymerase lambda n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ91_9PHAE)

HSP 1 Score: 197 bits (500), Expect = 6.570e-56
Identity = 104/180 (57.78%), Postives = 128/180 (71.11%), Query Frame = 1 
Query:    1 RYEDLRERMHRSEAAEIETFVKTVAESLCPGVRCQA------------CGSYRRGKETCGDVDVLICPPEGQEDCSIMLDLLDELRSSGFLTDDLAMPK-PHEPGHSQSYMGVCKLSGEGRKYRRVDIKLYPTSMFGFAVLYFTGSGHFNCSMRYYAKMKGLSLSDKSLKAVNRVEGKKI 501
            R+ED++ RM RSEAAEIE  V  VA+S+CPGV CQA            CGSYRR K  CGDVDVLI PPEGQED S+ L+L+ EL  +  +TD LA+P+ P+ PG  Q++MGVCKL GEGR +RR+DIKLYP SMF FAVLYF GSG FN +MR + K KGL L+DK L  V+   G+++
Sbjct:  395 RHEDIKPRMPRSEAAEIEAAVTKVAQSICPGVICQASFLTSPRRRTEACGSYRRVKRNCGDVDVLIRPPEGQEDSSMFLELVKELTETRLITDRLAVPEGPYTPGKPQTFMGVCKLPGEGRLHRRLDIKLYPASMFAFAVLYFAGSGDFNMNMRCFGKSKGLKLNDKGLFKVDPFSGEEV 574
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BLAST of mRNA_S-dermatodea_contig12631.1621.1 vs. uniprot
Match: UPI0008FEC294 (DNA polymerase lambda isoform X2 n=2 Tax=Bathyergidae TaxID=10167 RepID=UPI0008FEC294)

HSP 1 Score: 171 bits (434), Expect = 7.650e-50
Identity = 92/168 (54.76%), Postives = 114/168 (67.86%), Query Frame = 1 
Query:    4 YEDLRERMHRSEAAEIETFVKTVAESLCPGVRCQACGSYRRGKETCGDVDVLICPPEGQEDCSIMLDLLDELRSSGFLTDDLAMPKPHEPGHSQSYMGVCKLSGEGRKYRRVDIKLYPTSMFGFAVLYFTGSGHFNCSMRYYAKMKGLSLSDKSLKA--VNRVEGKKI 501
            Y D  ERM R EAAEIE  V+  A++L PG+ C ACGS+RRGK TCGDVDVL+  P+G+    I   LLD+LR  GFLTDDL   + H  G  Q Y+GVC+L G GR++RR+DI L P S F  A+LYFTGS HFN SMR  AK KG+SLS+ +L+   V   +G K+
Sbjct:  105 YSDFLERMPREEAAEIEQTVRVAAQALSPGLLCVACGSFRRGKLTCGDVDVLLTHPDGRSHRGIFSRLLDKLRQQGFLTDDLVSQEDH--GQQQKYLGVCQLPGPGRRHRRLDIILVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALRTAVVRGTQGAKV 270
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BLAST of mRNA_S-dermatodea_contig12631.1621.1 vs. uniprot
Match: A0A8C0G3I4_CHEAB (DNA polymerase n=1 Tax=Chelonoidis abingdonii TaxID=106734 RepID=A0A8C0G3I4_CHEAB)

HSP 1 Score: 170 bits (430), Expect = 2.400e-49
Identity = 93/164 (56.71%), Postives = 114/164 (69.51%), Query Frame = 1 
Query:    4 YEDLRERMHRSEAAEIETFVKTVAESLCPGVRCQACGSYRRGKETCGDVDVLICPPEGQEDCSIMLDLLDELRSSGFLTDDLAMPKPHEPGHSQSYMGVCKLSGEGRKYRRVDIKLYPTSMFGFAVLYFTGSGHFNCSMRYYAKMKGLSLSDKSLK-AVNRVEG 492
            YED  ERM R EAAEIE  V   A SL PG+ C ACGSYRRGK TCGDVDVL+  P+GQ    I   LLD LR SGFLTDDL + +  + G+ + Y+GVC+L G GR++RR+DI + P + F  A+LYFTGS +FNCSMR  AK +G+SLS+ +L  AV R  G
Sbjct:   96 YEDFLERMPREEAAEIEQTVSKAAWSLNPGLVCVACGSYRRGKATCGDVDVLVTHPDGQSHRGIFGKLLDSLRRSGFLTDDLVIQE--DSGNQKKYLGVCRLPGPGRRHRRLDIIVAPHAEFACALLYFTGSAYFNCSMRALAKTRGMSLSEHALHTAVVRAPG 257
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BLAST of mRNA_S-dermatodea_contig12631.1621.1 vs. uniprot
Match: A0A2K6FMH0_PROCO (DNA polymerase n=2 Tax=Lemuriformes TaxID=376915 RepID=A0A2K6FMH0_PROCO)

HSP 1 Score: 167 bits (424), Expect = 5.790e-49
Identity = 92/168 (54.76%), Postives = 111/168 (66.07%), Query Frame = 1 
Query:    4 YEDLRERMHRSEAAEIETFVKTVAESLCPGVRCQACGSYRRGKETCGDVDVLICPPEGQEDCSIMLDLLDELRSSGFLTDDLAMPKPHEPGHSQSYMGVCKLSGEGRKYRRVDIKLYPTSMFGFAVLYFTGSGHFNCSMRYYAKMKGLSLSDKSLKA--VNRVEGKKI 501
            Y+D  ERM R EAAEIE  V+  A +  PG+ C ACGSYRRGK TCGDVDVLI  P+G+    I   LLD LR  GFLTDDL   +  E G  Q Y+GVC+L G GR++RR+DI + P S F  A+LYFTGS HFN SMR  AK KG+SLS+ +L    V   +G K+
Sbjct:   53 YDDFLERMPREEAAEIEQTVREAARAFNPGLLCVACGSYRRGKMTCGDVDVLITHPDGRSHQGIFSRLLDSLRQQGFLTDDLVSHE--ENGQQQKYLGVCQLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTGVVRNTQGVKV 218
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BLAST of mRNA_S-dermatodea_contig12631.1621.1 vs. uniprot
Match: W4GGX8_9STRA (DNA polymerase n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GGX8_9STRA)

HSP 1 Score: 175 bits (444), Expect = 1.970e-48
Identity = 97/172 (56.40%), Postives = 118/172 (68.60%), Query Frame = 1 
Query:    4 YEDLRERMHRSEAAEIETFVKTVAESLCPGVRCQACGSYRRGKETCGDVDVLICPPEGQEDCSIMLDLLDELRSSGFLTDDLAMPKPHEPGHSQSYMGVCKLSGEGRKYRRVDIKLYPTSMFGFAVLYFTGSGHFNCSMRYYAKMKGLSLSDKSLKAVNRVEG-KKIHSFPS 516
            Y+D   ++ RSE  EIE+ VK    SL P      CGSYRRGK   GDVDVLI  P  Q+DC+IM  LL +L + GFLTDDL   + H+ G S SYMGVC+L GEGR+YRR+DIK+YP ++FGFA LYFTGS HFN SMR +AKMKG SL+DK L    R +G KK+   P+
Sbjct:  448 YDDFLAKIPRSEVQEIESVVKQHVHSLLPRAVAITCGSYRRGKSQSGDVDVLISDPT-QDDCNIMPRLLADLHAIGFLTDDLTTVEEHKIGGSDSYMGVCRL-GEGRRYRRIDIKVYPRNLFGFAQLYFTGSDHFNRSMRAFAKMKGYSLTDKGLYKATRSKGVKKLKQGPN 617
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BLAST of mRNA_S-dermatodea_contig12631.1621.1 vs. uniprot
Match: A0A6J0E3F8_PERMB (DNA polymerase n=6 Tax=Muroidea TaxID=337687 RepID=A0A6J0E3F8_PERMB)

HSP 1 Score: 167 bits (424), Expect = 2.430e-48
Identity = 92/170 (54.12%), Postives = 114/170 (67.06%), Query Frame = 1 
Query:    4 YEDLRERMHRSEAAEIETFVKTVAESLCPGVRCQACGSYRRGKETCGDVDVLICPPEGQEDCSIMLDLLDELRSSGFLTDDLAMPKPHEPGHSQSYMGVCKLSGEGRKYRRVDIKLYPTSMFGFAVLYFTGSGHFNCSMRYYAKMKGLSLSDKSLKA--VNRVEGKKIHS 507
            Y+D  +RM R EAAEIE  V+  A++  PG+ C ACGSYRRGK TCGDVDVLI  P+G+    I   LLD LR  GFLTDDL   + +  G  Q Y+GVC+L G GR++RR+DI + P S F  A+LYFTGS HFN SMR  AK KG+SLS+ +L A  V   +G K+ S
Sbjct:  105 YDDFLDRMPREEAAEIEQTVRLSAQAFNPGLLCVACGSYRRGKVTCGDVDVLITHPDGRSHQGIFSRLLDSLRQQGFLTDDLVSQEDN--GQQQKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSAAVVRNSQGVKVGS 272
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BLAST of mRNA_S-dermatodea_contig12631.1621.1 vs. uniprot
Match: A0A8C8Z8S2_PROSS (DNA polymerase n=1 Tax=Prolemur simus TaxID=1328070 RepID=A0A8C8Z8S2_PROSS)

HSP 1 Score: 166 bits (420), Expect = 3.450e-48
Identity = 91/168 (54.17%), Postives = 111/168 (66.07%), Query Frame = 1 
Query:    4 YEDLRERMHRSEAAEIETFVKTVAESLCPGVRCQACGSYRRGKETCGDVDVLICPPEGQEDCSIMLDLLDELRSSGFLTDDLAMPKPHEPGHSQSYMGVCKLSGEGRKYRRVDIKLYPTSMFGFAVLYFTGSGHFNCSMRYYAKMKGLSLSDKSLKA--VNRVEGKKI 501
            Y+D  +RM R EAAEIE  V+  A +  PG+ C ACGSYRRGK TCGDVDVLI  P+G+    I   LLD LR  GFLTDDL   +  E G  Q Y+GVC+L G GR++RR+DI + P S F  A+LYFTGS HFN SMR  AK KG+SLS+ +L    V   +G K+
Sbjct:   67 YDDFLDRMPREEAAEIEQTVREAARAFNPGLLCVACGSYRRGKVTCGDVDVLITHPDGRSHQGIFSCLLDSLRQRGFLTDDLVSHE--ENGQQQKYLGVCQLPGPGRRHRRLDIIIVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTGVVRNTQGVKV 232
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12631.1621.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2F8_ECTSI2.410e-7166.09DNA polymerase n=1 Tax=Ectocarpus siliculosus TaxI... [more]
A0A6H5JHQ3_9PHAE1.680e-6464.37DNA polymerase lambda n=1 Tax=Ectocarpus sp. CCAP ... [more]
D7G2F7_ECTSI6.570e-6464.29DNA polymerase lambda n=1 Tax=Ectocarpus siliculos... [more]
A0A6H5JQ91_9PHAE6.570e-5657.78DNA polymerase lambda n=1 Tax=Ectocarpus sp. CCAP ... [more]
UPI0008FEC2947.650e-5054.76DNA polymerase lambda isoform X2 n=2 Tax=Bathyergi... [more]
A0A8C0G3I4_CHEAB2.400e-4956.71DNA polymerase n=1 Tax=Chelonoidis abingdonii TaxI... [more]
A0A2K6FMH0_PROCO5.790e-4954.76DNA polymerase n=2 Tax=Lemuriformes TaxID=376915 R... [more]
W4GGX8_9STRA1.970e-4856.40DNA polymerase n=2 Tax=Aphanomyces astaci TaxID=11... [more]
A0A6J0E3F8_PERMB2.430e-4854.12DNA polymerase n=6 Tax=Muroidea TaxID=337687 RepID... [more]
A0A8C8Z8S2_PROSS3.450e-4854.17DNA polymerase n=1 Tax=Prolemur simus TaxID=132807... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12631contigS-dermatodea_contig12631:511..7005 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score223.8
Seed ortholog evalue6.1e-56
Seed eggNOG ortholog2880.D7G2F8
Preferred namePOLB
KEGG rclassRC00536
KEGG koko:K01834,ko:K02330,ko:K03512,ko:K10981
KEGG ReactionR01518
KEGG Pathwayko00010,ko00260,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03410,ko03450,ko04922,ko05166,ko05203,ko05230,map00010,map00260,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map03410,map03450,map04922,map05166,map05203,map05230
KEGG ModuleM00001,M00002,M00003,M00296
GOsGO:0000228,GO:0000724,GO:0000725,GO:0000726,GO:0000793,GO:0000794,GO:0000795,GO:0002200,GO:0002376,GO:0002377,GO:0002440,GO:0002520,GO:0002562,GO:0002566,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003824,GO:0003887,GO:0003906,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005819,GO:0005856,GO:0005874,GO:0005876,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006266,GO:0006281,GO:0006284,GO:0006285,GO:0006286,GO:0006287,GO:0006288,GO:0006289,GO:0006290,GO:0006302,GO:0006303,GO:0006310,GO:0006464,GO:0006508,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0006950,GO:0006952,GO:0006954,GO:0006974,GO:0007154,GO:0007165,GO:0007275,GO:0007431,GO:0007435,GO:0007568,GO:0008017,GO:0008092,GO:0008150,GO:0008152,GO:0008219,GO:0008630,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009636,GO:0009653,GO:0009887,GO:0009987,GO:0010033,GO:0010212,GO:0010224,GO:0010332,GO:0012501,GO:0015630,GO:0015631,GO:0016311,GO:0016444,GO:0016445,GO:0016446,GO:0016447,GO:0016579,GO:0016740,GO:0016772,GO:0016779,GO:0016829,GO:0016835,GO:0018130,GO:0019438,GO:0019538,GO:0019899,GO:0022612,GO:0023052,GO:0030145,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033151,GO:0033152,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0035272,GO:0035556,GO:0036211,GO:0036296,GO:0042221,GO:0042493,GO:0042592,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044454,GO:0044464,GO:0045471,GO:0046483,GO:0046677,GO:0046872,GO:0046914,GO:0048513,GO:0048534,GO:0048535,GO:0048536,GO:0048731,GO:0048732,GO:0048856,GO:0048872,GO:0050789,GO:0050794,GO:0050896,GO:0051103,GO:0051402,GO:0051575,GO:0051716,GO:0055093,GO:0065007,GO:0065008,GO:0070013,GO:0070482,GO:0070646,GO:0070647,GO:0070997,GO:0071704,GO:0071707,GO:0071897,GO:0090304,GO:0097159,GO:0097190,GO:0097193,GO:0097305,GO:0097510,GO:0098501,GO:0098502,GO:0099080,GO:0099081,GO:0099086,GO:0099512,GO:0099513,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1901700
EggNOG free text desc.DNA-directed DNA polymerase activity
EggNOG OGsCOG1796@1,KOG2534@2759
EC2.7.7.7,5.4.2.11
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03400,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Exons4
Model size531
Cds size507
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12631.1621.1prot_S-dermatodea_contig12631.1621.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12631 511..6981 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924256.087209-CDS-S-dermatodea_contig12631:510..6821622924256.087209-CDS-S-dermatodea_contig12631:510..682Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12631 511..682 -
1694079129.3993669-CDS-S-dermatodea_contig12631:510..6821694079129.3993669-CDS-S-dermatodea_contig12631:510..682Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12631 511..682 -
1622924256.09816-CDS-S-dermatodea_contig12631:4021..41971622924256.09816-CDS-S-dermatodea_contig12631:4021..4197Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12631 4022..4197 -
1694079129.4108953-CDS-S-dermatodea_contig12631:4021..41971694079129.4108953-CDS-S-dermatodea_contig12631:4021..4197Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12631 4022..4197 -
1622924256.1059248-CDS-S-dermatodea_contig12631:4857..49351622924256.1059248-CDS-S-dermatodea_contig12631:4857..4935Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12631 4858..4935 -
1694079129.419598-CDS-S-dermatodea_contig12631:4857..49351694079129.419598-CDS-S-dermatodea_contig12631:4857..4935Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12631 4858..4935 -
1622924256.1178737-CDS-S-dermatodea_contig12631:6900..69811622924256.1178737-CDS-S-dermatodea_contig12631:6900..6981Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12631 6901..6981 -
1694079129.4286478-CDS-S-dermatodea_contig12631:6900..69811694079129.4286478-CDS-S-dermatodea_contig12631:6900..6981Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12631 6901..6981 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924256.1259024-UTR-S-dermatodea_contig12631:6981..70051622924256.1259024-UTR-S-dermatodea_contig12631:6981..7005Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12631 6982..7005 -
1694079129.4373357-UTR-S-dermatodea_contig12631:6981..70051694079129.4373357-UTR-S-dermatodea_contig12631:6981..7005Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12631 6982..7005 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12631.1621.1

>prot_S-dermatodea_contig12631.1621.1 ID=prot_S-dermatodea_contig12631.1621.1|Name=mRNA_S-dermatodea_contig12631.1621.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=169bp
MHRSEAAEIETFVKTVAESLCPGVRCQACGSYRRGKETCGDVDVLICPPE
GQEDCSIMLDLLDELRSSGFLTDDLAMPKPHEPGHSQSYMGVCKLSGEGR
KYRRVDIKLYPTSMFGFAVLYFTGSGHFNCSMRYYAKMKGLSLSDKSLKA
VNRVEGKKIHSFPSYRRE*
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mRNA from alignment at S-dermatodea_contig12631:511..7005-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12631.1621.1 ID=mRNA_S-dermatodea_contig12631.1621.1|Name=mRNA_S-dermatodea_contig12631.1621.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=6495bp|location=Sequence derived from alignment at S-dermatodea_contig12631:511..7005- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGTACGAAGATCTTCGAGAGCGAATGCACCGTTCCGAGGCAGCTGAGAT
TGAGACCTTCGTCAAGACCGTTGCAGAGAGTCTGTGCCCCGGGGTGCGGT
GCCAGGTGAGGTGGTTGTCTCGGGCAGTTTGTTCGTAACCGTGGTTTTCA
GGCGGAGGTAAGAGACGGGTTGAGTCTGTGGTATTTTTGTGGGAGATTGT
GATGGTGATGGTGATGGTGATGGTGATGGTGATGGTAATGATGATGACGA
TGTTGATGGTACGTTACAGGGGAAAAAATACCGTGACAATTGCCGCGTTT
TCCGTTCAATCAACGTGGGCTACTATAATATAATAGCGGTCGTGCGTGAG
CGGTTGACATAAAACGCTGTTCTCCCGTTTTGCGCCTTTTGCTGGTTTAA
AGTTGTCCTTGCGAATGAGACAGCTTCTTTGCTCGTTATTATAGTTTCCC
TAAAAAATACAGATCTCAGCAACATAGAGCGAGCGTTGCGGTCCCACCTT
TTCAAGAGGGAAGGTGGTCCAAGCTAGACCTATGGAGGCTCAGTTGTTAC
ATCTGATGCTATGGTGTCTTATCATGTACCTGGTACGAAGCATGATGTTG
TACTTGGTATGGTTATGTTAGCATACAGGACATGAGTCTTTGTCCAGGTA
TATCCTGGTGATGTATCTTTGCTGCGTTTTTATGAGCTAGTTCTATTAAA
CATTCCTTTACTACTATCACATACTTTTGTTTTGTATATTCTCTTGACTG
AGCCTTTCTGTTCGTTTCTTTGGGGAGTTTTACATAGTACACCCATACTA
CCTTTGTCTTATTGTTGTGAAATGACTGCTCAGAACAACAAACAGCTCTC
CTTTTTTTGCAGGATCATGTGCTGCAAAGAAACTCCTCGTACTCGCAGCA
CTACCAGTCTTGTAGCCCCCCCCCCCGCAAAGACCATTAACCATTTTTCA
ACGATATTCATCAACTCTCTTCGTTCTTGTATCATACCAGGTATATACTT
CGAAGTATGATACTATTAACAATTTCGAGACAGCCTGAAATCGGGTTGAT
CTGCTCGCACCGTGTTCACATCGACCCGTTGAGTACATACTATACTATAT
ACTATATACCAATGCTTCATACTCTATATATTATATGCTGAATACTGTAT
ACCATATACTATACTAGTGTGTAGCCACGGCTACGCCCGTGTGAGGTGTG
CATTGGTAGGACGATATGCTGACGGAAGGCGACACGGAGGCCGAACGCGG
TCGAGCTACTGTGCGCGTCGCTGCTGTGCGTGTTGCTGCTGTGCGTGTCG
CTGCTGTGTTTTCGCTTTATTAAAAAAATATAATCGCTCAACACAAACAT
CAAGTTGTTTGGCATCAGACATCATCCTTGTCTAAAATCTATATACACAA
TCGGTCATTGTTGCATTAATTATTAAGGTGCTGTGTGCTGTATAGTATAT
GCTATATACTATACACTATATACTATGTACTACTCTGAATATACTCCTAG
TAATATTAGTAGCCGTAGCCGCGGCGGAAAAGTGATGATGAACTGCCACG
CTAGCTTGCATGCATGCACGCCGGTGGTACACTGGTCATCGCGATCACCC
CTACTGATGATACTCCCCGCTAAAGTACCGTACTGCTGTATATGTTGAAG
TCCATGTATGGTTTATTATAGTGTTTGGCCTTGACTCTTTGCTATAGCGT
CCGACCACAAGTCGGGTTGGCATCAGCCGATCGGCTAGATACGTCTGGTA
AATCAGCCAAATCGATCAAATCGACCAAACCAACGAATCAAACAAGCGTG
AAACAACAATTTGGGACTCGTTTTCTTTTGGTCAGGCGGCACTACTGTGA
GTCTATCCAGTCATCGGGGCGCCCGGAGCAATCCAGACCAATGGGTGAAT
CCCGAAAAAACCGCTTGGGATACATTTTGACCAATGAGGGCAAGCAAAAA
GCTATACGAAGGCGTCGCCCCCCTGCCCGTCCCCCACTGAACGAATCGCG
TTTTGGCCTCTTGTTCCGTTCATGAACATTGGTGTGTGTGTTTTGCTGTG
GGTTTTGTTATCATTGACAGGCGTGCGGGAGCTACAGGCGGGGGAAGGAG
ACGTGCGGCGATGTGGATGTGCTTATCTGCCCTCCCGAAGGGCAAGAGGT
ATGCGTCTGTGTGTGCGTCGTTGTGCTATCGTGTCATGATCTTGTCGGTA
TCGTGTTGTGTCGTATCGTTTTCGTGCGGTAAACTCGACCGTGATGATTG
TTTTCGAAGCCTGTCTGTGAGCAATCCTAAGGTAGGCCTAAGGTTGGGGG
GGCGGGAAGGTATTATTTTCCCTCTTGAAAAGGTGAGACCCCAACGCTCG
CTCTATGTTTTTGAAAACTTTTGTTTTGAGGGAAGGGTTGTCGGCTGGCC
AGCCACAATAAAGATGTTGCAATCCGGAACATATTGGTTGAAGCTGGTAT
ACACGGAACGAGATCTGAGATGGGCTGGCCAATCAGGCGCGAGTACAGCA
AAATGGAAAAACGCCTTCTGAACTCCTGCGCCACAGACAAAAGCCAATTT
TCTTACACCCGCTCCTATATTTCGATTCCCCGACTTTGTATTTTTTGTGT
GATTATCCGGCGTACTACTATATAATTTTTCCCTTTCTGTTTCGCTGGAA
CTCTTGCGCTCATCCTTGCTACTGAGCCATATACCCGACTGTTAATACCT
TGTCAGTAATGTGTACTGCAACCGATGTGGAATAGCCACGCACTATGAAG
ACCCCCCCCCCCCCCCCCCCCGACCCTCCCCCCTGCTGCACGCTTCCCAC
TATCCCAGGACTGCTCCATAATGCTTGATCTGCTTGACGAGCTGAGATCG
TCAGGGTTCCTTACGGACGACCTGGCTATGCCGAAGCCGCACGAGCCCGG
ACACTCGCAGAGCTACATGGGCGTCTGCAAGCTGTCTGGGGAGGGGCGCA
AGTACCGCCGGGTGGACATCAAGCTCTACCCCACGTGGGTGACCTTGCAT
TTGCGTACCTCGTGTAGGCAGGTTTGACTATGATGCCTTCCGTGTTACGC
GTGCGCTTCATCGGCGAGAAGGATGTTTGAGCTTGCTGATTGGGTAGAGA
TTTTTTGCGGTGCTATGATCATCGGAGTGGTTGAGATTCGATTATTATCG
CATTCGATCATGTGCGGTGTGCTCGCGCTCATAACGCGACACTCCCCACA
AACCTCTACTAATACTACATAATCATTTCCTCTCCGCCTTCTACAGCAGC
ACCGGCAGCGCACACAGCCACTTCTCACATACACGTACGCTTGCACGCTC
GTGTGCGCCACCTCTCCCTCACACACACGCGCGCGCGCACTGCTGTGCCT
TCGTGTCGGTTGATCATGATGGAGATGACGTCATGATGGTGGAGATGACG
TCATAATGATGATGGTGTAATGATGATGATGTTTACATAACAGCTGATCT
ACCATTCTCGAAACTCATCATGCCGTAGTCGGTCACAAGAGCGATCCTGC
GATCTTTGACTCAGGGGGGAACTAAAAAAAACATCGGATCACACTTGGAA
AAACCCCGACGGAAACAACTTGATGAACAAAAAAACAAAAAAACAGAAAT
ATTGAGCCGTTACTATTGTACGTGCCGAACAGTACCGTATACCCAACATA
GTGTTCCAGACATCAATATTGTCTGTGGCCTCACAACATCTGCGATGTTC
AGCTGTCCTATCACAAGGTTTAAAAGCAAGGAAATTGGTCCTGATTACTA
TTATACTGGTTACTGCTGTGTATCCGCGTAATAGAGGTCGATGTATACAA
TATGACTACTAAATGGTAAATGGGCAAATTTTCGCTACAATTGCGGAGGT
ACACAGCAGTAGCCAGGACCTAATGTGTGGAAAACAGTGTACCCCAACAT
GATATTCCAGAATCTATCTGCTCTGGCCTCTGTCCTGGCCTTACAACATC
TGCGCTGCGATCTTCAGGCCTGAAATGCCAAACCAAAAACATTAATATAT
TATACTAAAACTACCACAAGGTGTTGAGGGCCAAGGTTTAACAACACGAC
TAGAATGTGCTACAAATATTGAGCAGAAATTTGGTCCTGATTACTATTAT
ACTCGTTCTTCTTCTTTCTTTTTTTGTTTGTTTTTTCTTTTCGTAGCAGA
CCCAAGTCCCCAGGCATGCCCCCTCTGTTTTCGAGAGTTGGTTTATGTCA
ATTCCTTCTTTGTATGTACTATATAGGTAGTCCCGCAGTTTTTTTTTCTT
TTCTCGATCTCCCGATTTTTTCTCCTCTGACCACGAGCGGGATCGGCAAC
CATTGGTGGGCCGGTCGGCTGTATGTGTGATAATAATAATACTAATAATA
GTAAGAATAACTGATTACTGTTTATCCCCGTGATAGAGGTCAATGTATAT
AAACTATTACCAGGTATATACTAAAATTGAAATTGGGGCAAATTTTCGCC
GCGATTGGACGTACTAGATCTGGTGAACAGCAGTGCCATCGTAAAGCAGC
ACGGCCCTTTTGAACACTCTCCTCCGTCATCACCCCCTTAAAATAGTATA
TACCCTTCTTCGTCATCACCTTCCTGCCTTAGCTGTAGATCGATGTACGG
CTACGTCGTGAATTTCTTCACTAGATCTATGTCATCACCCCCTTAGAGCC
TATATTCTTTGTACAGCCTTCTTCGTGACGACACTACCATATACTCTTCT
CAGTCATCACCCCGTTAGAAAAGTACATACCATTCTCTGTCATAACCTCC
CTTGCTGGTATGTACGTCGATGTACGGCTTCGCGGTCCCTTACTTCACTG
GATCTACGTCTATAACCTCCCGCATTATCACTATTACAGAGGCACACAGT
AATCAGGTCCAATTTTTCCACAATTCTCAACCTAGAAAAATCAAAATAGG
CTGTGAATTTATTGAGATTTCAAGGCCGATGTTCTTGTATATGGCCAAAT
CTCGTGTTTTTTCTTTTTTCATGAGATTTTGTTGTTTGGGAATTCATGGT
CGGAATAATCGGGTATTCATGGTCATGAGATTTGGTCCTGATTACTCTGT
ACCTCCGTAATATTAAAAGAGCCATGTAGCTTTCTTTGTTACGACCCTTT
TATATACTTCCTATTCTCCGTCGACGCCCTCCTTTCAAGTTTTATACCCT
TCTCCGTCACCACCTTGCTTCCTGGCAGGTCGATGTACGACTTTGCAGTT
CCGTCCTTCACTGGATCGCCGTCAGCACCCCTTTAGAGCCTTTATCTTGA
TGTTACCTTCTTCGTGACGACCCTAGTATATATTCTTCTCCGTCATCACC
CCTTTACAAACGCACGTACCATTCTCTGTCATCACCTCCCTGCTTGGTAT
GTACATCTTTGTACGGCTTCGCGGTTCCTTACTTCGTCATAACCCCCCCC
CCGCTATATCAGTACTAATATACCTGTTTACATATTATTCTCCGTCAACG
CCCCCGTTTCAAGTTGTTATACCCTTATCCATCATCACCTTCCTTCCTTC
CCGGTAGATCGATGTACAGCTTCGTAGTTCCTAATTGGATCGCTGTCATC
ACCCCTTAACCCTTTTGGAACTAAGGCTGTTTTCGGGTAACTGCTTGCTA
TCATTTTGTACCCAATTGGGACTAAGCCTGGCGACGAAGCCTGTTTTCGG
GTAACTGTTGACTACCATAATAACAAACAGTTACCCGAAAACAGCCTTAG
TCCCAAAACAAAAGGATGTATAAAATAATAGCAAACAGTTACCCGAAAAC
AGCCTTATTCCCAAAAGGGTTAAGAGCCTATATCTTTATGCAAACTTCTT
CGTGACGACCCTATTTTATACTATATATACTTTTGTCCGTCATCACCCCG
GTACAAAAGTATATACCATTCTCTGTCATCACCTCCCTGCTTGGCGTGCA
CGTCGATATACGGCTTCGGGGTTCCTTACTTCACTAAATCTTCGTCAGCA
TCCCCCTGCTATATCACTATGTAGCTTTCTTGGTGACGACCCTCATATAT
AATTTTCTCCGTCATCGCCCCCTTTTTGAAAGTACATTTGTTCATTTTCT
CCACCTCCGCCGCGGAAAGCGCAACAGCGTGAGTAAGCAAAAAATCCGAG
AAATCGGCTATTGAGCTGCGGGGGTGCTGAACTAACCCAATGCATTCGCG
AAAAAAAGCAAAGGTGAGAACATACCGGGGATGAGAGAGATGGGATGATC
AATCCCTTGTGATCACAGACGGACCTACCTCGGAAAAGCAAGTCTATCAT
GTGTGTGCCAAAAAAATGTATGTAGATACATGTATTATATACCCTTCTCC
ATTATCGCCTTGTTTCCTGGCAGATCGATGTTCGGCTTCGCAGTTCTCTA
CTTTACGGGATCGGGACACTTCAACTGCAGCATGCGCTACTACGCCAAGA
TGAAGGGGCTAAGCCTGAGCGATAAAAGCCTCAAGGCGGTCAACAGGGTC
GAGGGAAAGAAGATCCACAGCTTCCCCAGCTACAGGCGAGAGTAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig12631:511..7005-

>mRNA_S-dermatodea_contig12631.1621.1 ID=mRNA_S-dermatodea_contig12631.1621.1|Name=mRNA_S-dermatodea_contig12631.1621.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1014bp|location=Sequence derived from alignment at S-dermatodea_contig12631:511..7005- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCACCGTTCCGAGGCAGCTGAGATTGAGACCTTCGTCAAGACCGTTGC
AGAGAGTCTGTGCCCCGGGGTGCGGTGCCAGATGCACCGTTCCGAGGCAG
CTGAGATTGAGACCTTCGTCAAGACCGTTGCAGAGAGTCTGTGCCCCGGG
GTGCGGTGCCAGGCGTGCGGGAGCTACAGGCGGGGGAAGGAGACGTGCGG
CGATGTGGATGTGCTTATCTGCCCTCCCGAAGGGCAAGAGGCGTGCGGGA
GCTACAGGCGGGGGAAGGAGACGTGCGGCGATGTGGATGTGCTTATCTGC
CCTCCCGAAGGGCAAGAGGACTGCTCCATAATGCTTGATCTGCTTGACGA
GCTGAGATCGTCAGGGTTCCTTACGGACGACCTGGCTATGCCGAAGCCGC
ACGAGCCCGGACACTCGCAGAGCTACATGGGCGTCTGCAAGCTGTCTGGG
GAGGGGCGCAAGTACCGCCGGGTGGACATCAAGCTCTACCCCACGACTGC
TCCATAATGCTTGATCTGCTTGACGAGCTGAGATCGTCAGGGTTCCTTAC
GGACGACCTGGCTATGCCGAAGCCGCACGAGCCCGGACACTCGCAGAGCT
ACATGGGCGTCTGCAAGCTGTCTGGGGAGGGGCGCAAGTACCGCCGGGTG
GACATCAAGCTCTACCCCACATCGATGTTCGGCTTCGCAGTTCTCTACTT
TACGGGATCGGGACACTTCAACTGCAGCATGCGCTACTACGCCAAGATGA
AGGGGCTAAGCCTGAGCGATAAAAGCCTCAAGGCGGTCAACAGGGTCGAG
GGAAAGAAGATCCACAGCTTCCCCAGCTACAGGCGAGAGTAAATCGATGT
TCGGCTTCGCAGTTCTCTACTTTACGGGATCGGGACACTTCAACTGCAGC
ATGCGCTACTACGCCAAGATGAAGGGGCTAAGCCTGAGCGATAAAAGCCT
CAAGGCGGTCAACAGGGTCGAGGGAAAGAAGATCCACAGCTTCCCCAGCT
ACAGGCGAGAGTAA
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