mRNA_S-dermatodea_contig12624.1618.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12624.1618.1
Unique NamemRNA_S-dermatodea_contig12624.1618.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12624.1618.1 vs. uniprot
Match: D7FKZ0_ECTSI (Oxoglutarate dehydrogenase (succinyl-transferring) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKZ0_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 9.560e-24
Identity = 43/50 (86.00%), Postives = 50/50 (100.00%), Query Frame = 1 
Query:    1 QFGEDCIIDMVCYRRMGHNEIDQPLFTQPVLYKQIAQHPDTASIFETRLV 150
            Q+GEDCIIDM+CYRRMGHNEIDQPLFTQPVLYKQI+QHPDTA+IFE++L+
Sbjct:  454 QYGEDCIIDMICYRRMGHNEIDQPLFTQPVLYKQISQHPDTAAIFESKLL 503
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BLAST of mRNA_S-dermatodea_contig12624.1618.1 vs. uniprot
Match: A0A835Z9M1_9STRA (Oxoglutarate dehydrogenase (succinyl-transferring) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9M1_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.020e-21
Identity = 40/49 (81.63%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:    4 FGEDCIIDMVCYRRMGHNEIDQPLFTQPVLYKQIAQHPDTASIFETRLV 150
            FGEDCI+DM+CYRRMGHNEIDQPLFTQP +YK+IA HPDT SIFE RL+
Sbjct:  471 FGEDCIVDMICYRRMGHNEIDQPLFTQPTVYKKIANHPDTVSIFEARLL 519
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BLAST of mRNA_S-dermatodea_contig12624.1618.1 vs. uniprot
Match: A0A7S3DPD1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DPD1_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 2.210e-17
Identity = 32/50 (64.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:    1 QFGEDCIIDMVCYRRMGHNEIDQPLFTQPVLYKQIAQHPDTASIFETRLV 150
            ++G D I+DM+CYRR GHNE+DQP FTQP+LYK+I++HP T  IFE RL+
Sbjct:  111 EWGSDVIVDMICYRRNGHNELDQPAFTQPLLYKEISRHPTTLQIFEKRLI 160
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BLAST of mRNA_S-dermatodea_contig12624.1618.1 vs. uniprot
Match: A0A7S4WA40_9STRA (Oxoglutarate dehydrogenase (succinyl-transferring) n=5 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4WA40_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 5.560e-17
Identity = 33/50 (66.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:    1 QFGEDCIIDMVCYRRMGHNEIDQPLFTQPVLYKQIAQHPDTASIFETRLV 150
            ++G D I+DM+CYRR+GHNE+DQPLFTQP LYK IA+HP T  I+E RL+
Sbjct:  510 EWGSDAIVDMICYRRLGHNELDQPLFTQPKLYKAIAKHPSTLQIYEKRLI 559
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BLAST of mRNA_S-dermatodea_contig12624.1618.1 vs. uniprot
Match: W7TVJ9_9STRA (Oxoglutarate dehydrogenase (succinyl-transferring) n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TVJ9_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.040e-16
Identity = 34/49 (69.39%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:    4 FGEDCIIDMVCYRRMGHNEIDQPLFTQPVLYKQIAQHPDTASIFETRLV 150
            +GEDCIID+VCYRR GHNE+DQPLFTQP+LY QI +HP T  I+  RL+
Sbjct:  507 WGEDCIIDVVCYRRHGHNELDQPLFTQPLLYSQIQKHPSTLEIYHDRLM 555
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BLAST of mRNA_S-dermatodea_contig12624.1618.1 vs. uniprot
Match: A0A7S3XQH6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQH6_HETAK)

HSP 1 Score: 79.7 bits (195), Expect = 3.610e-16
Identity = 35/49 (71.43%), Postives = 42/49 (85.71%), Query Frame = 1 
Query:    4 FGEDCIIDMVCYRRMGHNEIDQPLFTQPVLYKQIAQHPDTASIFETRLV 150
            F ED +IDM+CYRR GHNE+DQPLFTQPVLY++I +HP TA IF+ RLV
Sbjct:  411 FMEDIMIDMICYRRNGHNELDQPLFTQPVLYQKINKHPTTAQIFKQRLV 459
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BLAST of mRNA_S-dermatodea_contig12624.1618.1 vs. uniprot
Match: A0A7S2R3E7_9STRA (Oxoglutarate dehydrogenase (succinyl-transferring) n=2 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R3E7_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 9.210e-16
Identity = 34/50 (68.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    1 QFGEDCIIDMVCYRRMGHNEIDQPLFTQPVLYKQIAQHPDTASIFETRLV 150
            ++G D I+DMVCYRR GHNE+DQPLFTQP  YKQIA HP T  IFE  L+
Sbjct:  519 EWGTDVIVDMVCYRRYGHNELDQPLFTQPKFYKQIANHPATIEIFEKELL 568
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BLAST of mRNA_S-dermatodea_contig12624.1618.1 vs. uniprot
Match: A0A7S3LCB0_9STRA (Oxoglutarate dehydrogenase (succinyl-transferring) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LCB0_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 9.210e-16
Identity = 34/50 (68.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:    1 QFGEDCIIDMVCYRRMGHNEIDQPLFTQPVLYKQIAQHPDTASIFETRLV 150
            ++G D IIDM+CYRR GHNE+DQP FTQP LYK+I++HP T  IFE RLV
Sbjct:  519 EWGGDVIIDMICYRRNGHNELDQPAFTQPKLYKKISRHPTTLQIFEKRLV 568
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BLAST of mRNA_S-dermatodea_contig12624.1618.1 vs. uniprot
Match: A0A7S2UGI7_9STRA (Oxoglutarate dehydrogenase (succinyl-transferring) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UGI7_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.260e-15
Identity = 33/50 (66.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    1 QFGEDCIIDMVCYRRMGHNEIDQPLFTQPVLYKQIAQHPDTASIFETRLV 150
            ++G D IIDMVCYRR GHNE+DQP FTQP LYK+I+ HP T  +FE RL+
Sbjct:  504 EWGSDVIIDMVCYRRNGHNELDQPAFTQPKLYKKISSHPSTLMLFEKRLI 553
[Close]
BLAST of mRNA_S-dermatodea_contig12624.1618.1 vs. uniprot
Match: B8CBX3_THAPS (Oxoglutarate dehydrogenase (succinyl-transferring) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CBX3_THAPS)

HSP 1 Score: 77.4 bits (189), Expect = 2.350e-15
Identity = 31/50 (62.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    1 QFGEDCIIDMVCYRRMGHNEIDQPLFTQPVLYKQIAQHPDTASIFETRLV 150
            ++G D +IDM+CYRR GHNE+DQP+FTQP LYK I +HP T  IFE +L+
Sbjct:  480 EWGTDVVIDMICYRRNGHNELDQPMFTQPKLYKAITRHPSTLEIFEKKLI 529
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12624.1618.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKZ0_ECTSI9.560e-2486.00Oxoglutarate dehydrogenase (succinyl-transferring)... [more]
A0A835Z9M1_9STRA1.020e-2181.63Oxoglutarate dehydrogenase (succinyl-transferring)... [more]
A0A7S3DPD1_9STRA2.210e-1764.00Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
A0A7S4WA40_9STRA5.560e-1766.00Oxoglutarate dehydrogenase (succinyl-transferring)... [more]
W7TVJ9_9STRA1.040e-1669.39Oxoglutarate dehydrogenase (succinyl-transferring)... [more]
A0A7S3XQH6_HETAK3.610e-1671.43Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2R3E7_9STRA9.210e-1668.00Oxoglutarate dehydrogenase (succinyl-transferring)... [more]
A0A7S3LCB0_9STRA9.210e-1668.00Oxoglutarate dehydrogenase (succinyl-transferring)... [more]
A0A7S2UGI7_9STRA1.260e-1566.00Oxoglutarate dehydrogenase (succinyl-transferring)... [more]
B8CBX3_THAPS2.350e-1562.00Oxoglutarate dehydrogenase (succinyl-transferring)... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12624contigS-dermatodea_contig12624:6712..6861 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.8
Seed ortholog evalue4.1e-14
Seed eggNOG ortholog2880.D7FKZ0
KEGG rclassRC00004,RC00027,RC00627,RC02743,RC02833,RC02883
KEGG koko:K00164
KEGG ReactionR00621,R01933,R01940,R03316,R08549
KEGG Pathwayko00020,ko00310,ko00380,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00310,map00380,map01100,map01110,map01120,map01130,map01200
KEGG ModuleM00009,M00011,M00032
EggNOG free text desc.oxoglutarate dehydrogenase (succinyl-transferring) activity
EggNOG OGsCOG0567@1,KOG0450@2759
EC1.2.4.2
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01601,ko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size150
Cds size123
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924255.919577-UTR-S-dermatodea_contig12624:6711..67381622924255.919577-UTR-S-dermatodea_contig12624:6711..6738Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12624 6712..6738 +
1694079129.2978268-UTR-S-dermatodea_contig12624:6711..67381694079129.2978268-UTR-S-dermatodea_contig12624:6711..6738Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12624 6712..6738 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924255.9322488-CDS-S-dermatodea_contig12624:6738..68611622924255.9322488-CDS-S-dermatodea_contig12624:6738..6861Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12624 6739..6861 +
1694079129.3082118-CDS-S-dermatodea_contig12624:6738..68611694079129.3082118-CDS-S-dermatodea_contig12624:6738..6861Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12624 6739..6861 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12624.1618.1prot_S-dermatodea_contig12624.1618.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12624 6739..6861 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12624.1618.1

>prot_S-dermatodea_contig12624.1618.1 ID=prot_S-dermatodea_contig12624.1618.1|Name=mRNA_S-dermatodea_contig12624.1618.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=41bp
MVCYRRMGHNEIDQPLFTQPVLYKQIAQHPDTASIFETRLV
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mRNA from alignment at S-dermatodea_contig12624:6712..6861+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12624.1618.1 ID=mRNA_S-dermatodea_contig12624.1618.1|Name=mRNA_S-dermatodea_contig12624.1618.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=150bp|location=Sequence derived from alignment at S-dermatodea_contig12624:6712..6861+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGTTCGGCGAGGACTGCATCATCGACATGGTCTGCTACCGCCGCATGGG
ACACAACGAGATCGACCAGCCGCTCTTCACGCAGCCCGTGTTGTACAAGC
AGATCGCGCAGCACCCTGACACGGCCAGCATCTTCGAGACCAGACTGGTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig12624:6712..6861+

>mRNA_S-dermatodea_contig12624.1618.1 ID=mRNA_S-dermatodea_contig12624.1618.1|Name=mRNA_S-dermatodea_contig12624.1618.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=246bp|location=Sequence derived from alignment at S-dermatodea_contig12624:6712..6861+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTCTGCTACCGCCGCATGGGACACAACGAGATCGACCAGCCGCTCTT
CACGCAGCCCGTGTTGTACAAGCAGATCGCGCAGCACCCTGACACGGCCA
GCATCTTCGAGACCAGACTGGTGATGGTCTGCTACCGCCGCATGGGACAC
AACGAGATCGACCAGCCGCTCTTCACGCAGCCCGTGTTGTACAAGCAGAT
CGCGCAGCACCCTGACACGGCCAGCATCTTCGAGACCAGACTGGTG
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