mRNA_S-dermatodea_contig12600.1607.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12600.1607.1
Unique NamemRNA_S-dermatodea_contig12600.1607.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12600.1607.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12600contigS-dermatodea_contig12600:2685..3002 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size319
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924255.043053-CDS-S-dermatodea_contig12600:2684..30021622924255.043053-CDS-S-dermatodea_contig12600:2684..3002Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12600 2685..3002 +
1694079128.5477338-CDS-S-dermatodea_contig12600:2684..30021694079128.5477338-CDS-S-dermatodea_contig12600:2684..3002Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12600 2685..3002 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12600.1607.1prot_S-dermatodea_contig12600.1607.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12600 2685..3002 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12600.1607.1

>prot_S-dermatodea_contig12600.1607.1 ID=prot_S-dermatodea_contig12600.1607.1|Name=mRNA_S-dermatodea_contig12600.1607.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=106bp
SVTPHPSSPSPPIALPRESTHKGACSPVPKPLGASDRLWKYSDKNALAAI
EAEQLCSRIHADDAEIEKFLRVFLDASLGRHRRGCDRLSRNHRLRRCCRG
RPAIID
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mRNA from alignment at S-dermatodea_contig12600:2685..3002+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12600.1607.1 ID=mRNA_S-dermatodea_contig12600.1607.1|Name=mRNA_S-dermatodea_contig12600.1607.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=318bp|location=Sequence derived from alignment at S-dermatodea_contig12600:2685..3002+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGCGTCACTCCACATCCGTCCAGCCCCAGTCCTCCTATAGCACTCCCGCG
CGAATCAACACACAAGGGCGCCTGCTCTCCTGTGCCCAAGCCGCTCGGCG
CCTCCGACCGACTGTGGAAGTACTCGGACAAGAACGCACTGGCCGCAATC
GAAGCAGAACAACTCTGTAGTCGCATTCATGCTGATGATGCGGAGATCGA
GAAATTCCTCCGCGTCTTCCTCGATGCGTCGCTTGGCCGCCATCGCCGTG
GCTGCGATCGGCTCTCGCGGAATCATCGGCTGCGCCGCTGCTGCAGAGGA
CGGCCAGCCATCATTGAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig12600:2685..3002+

>mRNA_S-dermatodea_contig12600.1607.1 ID=mRNA_S-dermatodea_contig12600.1607.1|Name=mRNA_S-dermatodea_contig12600.1607.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at S-dermatodea_contig12600:2685..3002+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGCGTCACTCCACATCCGTCCAGCCCCAGTCCTCCTATAGCACTCCCGCG
CGAATCAACACACAAGGGCGCCTGCTCTCCTGTGCCCAAGCCGCTCGGCG
CCTCCGACCGACTGTGGAAGTACTCGGACAAGAACGCACTGGCCGCAATC
GAAGCAGAACAACTCTGTAGTCGCATTCATGCTGATGATGCGGAGATCGA
GAAATTCCTCCGCGTCTTCCTCGATGCGTCGCTTGGCCGCCATCGCCGTG
GCTGCGATCGGCTCTCGCGGAATCATCGGCTGCGCCGCTGCTGCAGAGGA
CGGCCAGCCATCATTGACAGCGTCACTCCACATCCGTCCAGCCCCAGTCC
TCCTATAGCACTCCCGCGCGAATCAACACACAAGGGCGCCTGCTCTCCTG
TGCCCAAGCCGCTCGGCGCCTCCGACCGACTGTGGAAGTACTCGGACAAG
AACGCACTGGCCGCAATCGAAGCAGAACAACTCTGTAGTCGCATTCATGC
TGATGATGCGGAGATCGAGAAATTCCTCCGCGTCTTCCTCGATGCGTCGC
TTGGCCGCCATCGCCGTGGCTGCGATCGGCTCTCGCGGAATCATCGGCTG
CGCCGCTGCTGCAGAGGACGGCCAGCCATCATTGAC
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