mRNA_S-dermatodea_contig1259.1595.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1259.1595.1
Unique NamemRNA_S-dermatodea_contig1259.1595.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig1259.1595.1 vs. uniprot
Match: A0A6H5KIA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIA1_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 3.130e-17
Identity = 59/125 (47.20%), Postives = 75/125 (60.00%), Query Frame = 2 
Query:    2 FMMEARVLMANAAVVDSTFQELGPGFTTCFRYENITDPDQAMRVASFVAPTNSSAERLSRTMLHKVK----SGSSRKSKRGKNGGRVNRMWPGHRATDELPNEAQLLVVDRLQQKLDKIEREQCS 364
            F+ E+R+L+ N AVV STFQEL P FTTCFRY  + DP QA RVA F+AP N +AE+L+  ML  VK      S  K   G+ G R+      H    + P  A   VV RLQQ+LD +E++ CS
Sbjct:  139 FIRESRILLNNLAVVHSTFQELDPAFTTCFRYGEMADPAQAARVAGFLAPNNRTAEKLADQMLSHVKIKSPPESGNKQSWGEGGKRLR-----HPEDVDPPKAA---VVTRLQQRLDMVEKDVCS 255
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BLAST of mRNA_S-dermatodea_contig1259.1595.1 vs. uniprot
Match: D7FMV3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMV3_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 2.340e-15
Identity = 44/70 (62.86%), Postives = 54/70 (77.14%), Query Frame = 2 
Query:    2 FMMEARVLMANAAVVDSTFQELGPGFTTCFRYENITDPDQAMRVASFVAPTNSSAERLSRTMLHKVKSGS 211
            FM E+R L+ NAAVV+STFQELGPGF TCFRYE+++DP+Q  RVA F+AP   +A+RL   ML  VK GS
Sbjct:  220 FMRESRALINNAAVVESTFQELGPGFATCFRYESMSDPEQTHRVARFIAPDEDTAQRLEGKMLENVKPGS 289
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BLAST of mRNA_S-dermatodea_contig1259.1595.1 vs. uniprot
Match: D7FMV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMV4_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 2.980e-12
Identity = 52/111 (46.85%), Postives = 68/111 (61.26%), Query Frame = 2 
Query:    2 FMMEARVLMANAAVVDSTFQELGPGFTTCFRYENITDPDQAMRVASFVAPTNSSAERLSRTMLHKVKSGSSRKSKRGKNGGRVNRMWPGHRATDELPNEAQLLVVDRLQQK 334
            F+ E+R+L+ N AVV STFQEL P FTTCFRY  + DP QA RVA F+AP N +AE+L+  +L  VK  S  +S   K+GG+  +    H    + P  A   VV RL Q+
Sbjct:  262 FIRESRILLNNLAVVHSTFQELDPSFTTCFRYGEMADPAQAARVAGFLAPNNHTAEKLADQILSHVKIKSPPESGNIKSGGKGGKRLK-HLEDVDPPKAA---VVTRLPQR 368
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1259.1595.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KIA1_9PHAE3.130e-1747.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMV3_ECTSI2.340e-1562.86Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FMV4_ECTSI2.980e-1246.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1259contigS-dermatodea_contig1259:3393..6440 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size3048
Cds size366
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1259.1595.1prot_S-dermatodea_contig1259.1595.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1259 3397..3762 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924254.0570421-UTR-S-dermatodea_contig1259:3392..33961622924254.0570421-UTR-S-dermatodea_contig1259:3392..3396Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1259 3393..3396 +
1694079127.796204-UTR-S-dermatodea_contig1259:3392..33961694079127.796204-UTR-S-dermatodea_contig1259:3392..3396Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1259 3393..3396 +
1622924254.0816586-UTR-S-dermatodea_contig1259:3762..64401622924254.0816586-UTR-S-dermatodea_contig1259:3762..6440Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1259 3763..6440 +
1694079127.8179715-UTR-S-dermatodea_contig1259:3762..64401694079127.8179715-UTR-S-dermatodea_contig1259:3762..6440Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1259 3763..6440 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924254.06964-CDS-S-dermatodea_contig1259:3396..37621622924254.06964-CDS-S-dermatodea_contig1259:3396..3762Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1259 3397..3762 +
1694079127.8096461-CDS-S-dermatodea_contig1259:3396..37621694079127.8096461-CDS-S-dermatodea_contig1259:3396..3762Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1259 3397..3762 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1259.1595.1

>prot_S-dermatodea_contig1259.1595.1 ID=prot_S-dermatodea_contig1259.1595.1|Name=mRNA_S-dermatodea_contig1259.1595.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=122bp
MMEARVLMANAAVVDSTFQELGPGFTTCFRYENITDPDQAMRVASFVAPT
NSSAERLSRTMLHKVKSGSSRKSKRGKNGGRVNRMWPGHRATDELPNEAQ
LLVVDRLQQKLDKIEREQCSW*
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mRNA from alignment at S-dermatodea_contig1259:3393..6440+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1259.1595.1 ID=mRNA_S-dermatodea_contig1259.1595.1|Name=mRNA_S-dermatodea_contig1259.1595.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3048bp|location=Sequence derived from alignment at S-dermatodea_contig1259:3393..6440+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTTCATGATGGAGGCCCGAGTCCTCATGGCGAACGCCGCAGTCGTGGATT
CGACCTTCCAAGAACTGGGGCCGGGCTTCACGACCTGCTTCCGGTACGAG
AACATAACCGACCCCGACCAAGCCATGCGGGTGGCGAGTTTTGTCGCGCC
TACGAACTCCTCGGCAGAGCGCTTGTCGAGAACCATGCTGCATAAGGTGA
AGTCGGGGTCGTCGCGCAAGTCAAAACGGGGCAAGAACGGCGGCAGGGTT
AATAGAATGTGGCCGGGTCATCGAGCGACCGATGAGCTGCCAAATGAGGC
GCAGCTGCTGGTGGTAGATCGGCTGCAGCAGAAGCTGGACAAGATCGAAC
GGGAGCAGTGCTCGTGGTAGCGGCCGTGCGCCGGGTCGTTGGTCGGTCGG
TGCCGTGTGCTTGTTTTTTTGTCTTACGGCGATGGAAATTTGAGCTATTT
AGCTTTGGCTGGGTGTTGCCCGGTGTAGGGGCTTCTGGTTTCCCGCCTTT
GAATATCAGGTTGTCATTACGGGGTTCGGCCTAACGTGAGTGTCGGGTGA
TAAATGTTGTGGGGATCGGGGCTTCCGTACCCAGCGTGGGTAGTTGGGTC
CCCCTTGCTTTTGTCTAGGTCTTCGCAGGCCGTTTGTTCATCGAGGAGCC
CTCGCCTGGCACATGACGTTGTATCCGATTCGAGCGATTCCGGTGGCCGA
ACTTCCTTCGTTGTGCGGGCGGCGGATCTGCGGAACCTGCGAGGACTCGC
GTTGTTTTCAGTGCAAGCCTACCTCGGTTTGTGCTACATGACGGTTTCGT
CTCTTTTGGTATTTTGACGCGGATTGCGGCCCCTGTCCCTTGCCGTGATG
TCGCGGTTGCCGTTAAGATTGTGCTTCCGCGAGAGCTGCGGCCGCCCCCC
CCTCCCCTACCCGCCCATCGTTCTCCCCACTCTACTCTGGGTTCGTGTTC
AACCACCCAATTGTATATGCGCTTTGCTGCATTGCGCCCGCCGGTGTCTC
GCGGTTTGCATCGCAGGCTGCTAGTGTAGCAGGGGGGGGGCGTGCGGGCG
TAGCTTGAAGCGTTGTCGGAAGGTACACGAATATGCGTGACGAACAGATG
TGTACCAAGTGATGCCGACGGTAGGGAAGATACAGTTTCGGCCGCTCGGT
CGCACGAGCTGATTCGCTCTTGGAAGCGGCTAGCCAGGTTTGTTCCTCTT
GCCCCCAAGACAAAAACAGCCAAGATATGTTCTTGGGCATGGATACATTT
GGGCACCGCCAACATTCATGGGTACCCGGTGCGAATTTGGTATCATGGAT
TTTTGTAAAGCCGCATAAGAGGTGCCTCCTTTGCGTCAAAATGTGGGACT
CCTACCGTAGGATGCTTCTATCCCATGTAGCGTAGGCGTTGTATGTGGTG
GATGGTTTCCGTACATATTACACCACAACACGAAGGACACTGTGTTCCCC
ACCATCCAGTTCGGGGCTGACAGAACGTTTGATGGGGCAAGTGTTTTGCG
TGCGAGACTCGTGTGGGGAACAGGTTGAAAGCGGGATATACTGAAGCCGC
AGGTTATCTATCTGTTGAGTGAGATATAGGGAAACTTTACCCCTGCTTTG
CCACATTTCGCGTTCGCGCGCCACACCGCTGCGTAGGGCTCGCTCAATGT
TTTTTAAAATCTTTGTATTTTTTTGGGGTATCCACGTTTCTTGAGGTTTG
CATGTATGTGCAGCTCGACCAATGGCCGAACGCGCGGCATGCACAGTGGG
CGGGTAACGAACCGTTCAACCTTTCGTCGTCTGATTTTTTGTCATGATCG
TATTTCTCCCAGGAGGTTCCTCGTTGTCCGCGCTTTCGCGTACGGTATCG
CTTAGCGGATCGCGGGACGCTTTTGAGAAGAGCCTTCTTGGCATTTTTGA
GCTGCTGATTTTGTCGTCTGCCCAGGATGGCTACAGCAGTGGTTGCTGAG
AGGCAGGTTATGAAGGTCTTCTTGCGCGCCGGTGCATTTTGTTGTATGTG
GGCTTCGCCAATTTGTTGCTATTCGAGTACAAACTGAAGCACATCCAGGT
CATTTTCTCGCTCGTCGATATATTTGCGCAAGGCTTACGAAGTCGGAGAT
ATTTAGGGAATAGTGATGGCCGTGCTGGGTTTTAGATGATTTCGTGTACT
GTAGCATGCTTCCTTTTAAAAAAAAATGTCGTTCGTTGACTGGTTGAATG
TCGCATGCGTAAGTTGCTGTTTTGTAGGGAGATTGCGTAAAAGTCGAGCC
ACGCAGTTTGTACTTTTTCAACAGAAGAAATTATCAAGGATAGACCACTT
GGTGCTGTGTGTGATGTATTTTTGAGTACTGTGTGCTGTTTGTTTGCATA
TACCAGTATGCTACAGTATATACTGTATGTGTCTTTGTGAGTTGTCATAA
TTTGGCCCACCATTCATTGCCCCTTGTTTGCTTTGTTCGTGTTTAAGCCG
GGTGTGTGTCTCCAAATAATGAAGGCCGCGGCAGTAGCCTGTCAAGGTGT
TTTGCTTTTAAGGGGGCGCGCACGGTGGAATCCGCTCTACATCAATTATT
GTAAAGGCCGAGGCAGAGCTTCCGTGTGGTTTTCGTGTGGCGCTCCGGGC
CTGGAGTATTTATGTACATTATTCCCTGATTTTTGTTGTTAAAATATATA
AAGCATTTTTGTTGTTCAAATACATAAAGCAGCAGTGAGCGGAATGAAGT
GGAAGCGGCCCAACTCCCAAGTCTTTCTTTGATCGTCAGACAGACCCGAA
GTAAGCAGGTGTGTATATATATGTTGCGTCGACTGCCAGTGATGAGGCAA
AACTTGTTACCGGGTACAAGTACTTCATTGTTTAGCAAGCGCAGACTATT
ATATTTCACGTCCGCCCGAAATAAACTATGCTTTGAACATGGTCCAGGCG
ATTCCCCGAATGAGTGCGATTACTTGGCTTTTATTCATTGTTTAGCTACG
GTGCAGAATCGACAGCGCGGGCCAATCAGAAGCAATTACTGAGGCACGGA
CCGACGCGGATCAATTTGGTGAGATAAAGAACGAACTTTTTCAAAAGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig1259:3393..6440+

>mRNA_S-dermatodea_contig1259.1595.1 ID=mRNA_S-dermatodea_contig1259.1595.1|Name=mRNA_S-dermatodea_contig1259.1595.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at S-dermatodea_contig1259:3393..6440+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATGGAGGCCCGAGTCCTCATGGCGAACGCCGCAGTCGTGGATTCGAC
CTTCCAAGAACTGGGGCCGGGCTTCACGACCTGCTTCCGGTACGAGAACA
TAACCGACCCCGACCAAGCCATGCGGGTGGCGAGTTTTGTCGCGCCTACG
AACTCCTCGGCAGAGCGCTTGTCGAGAACCATGCTGCATAAGGTGAAGTC
GGGGTCGTCGCGCAAGTCAAAACGGGGCAAGAACGGCGGCAGGGTTAATA
GAATGTGGCCGGGTCATCGAGCGACCGATGAGCTGCCAAATGAGGCGCAG
CTGCTGGTGGTAGATCGGCTGCAGCAGAAGCTGGACAAGATCGAACGGGA
GCAGTGCTCGTGGTAGATGATGGAGGCCCGAGTCCTCATGGCGAACGCCG
CAGTCGTGGATTCGACCTTCCAAGAACTGGGGCCGGGCTTCACGACCTGC
TTCCGGTACGAGAACATAACCGACCCCGACCAAGCCATGCGGGTGGCGAG
TTTTGTCGCGCCTACGAACTCCTCGGCAGAGCGCTTGTCGAGAACCATGC
TGCATAAGGTGAAGTCGGGGTCGTCGCGCAAGTCAAAACGGGGCAAGAAC
GGCGGCAGGGTTAATAGAATGTGGCCGGGTCATCGAGCGACCGATGAGCT
GCCAAATGAGGCGCAGCTGCTGGTGGTAGATCGGCTGCAGCAGAAGCTGG
ACAAGATCGAACGGGAGCAGTGCTCGTGGTAG
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