mRNA_S-dermatodea_contig12588.1594.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12588.1594.1
Unique NamemRNA_S-dermatodea_contig12588.1594.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig12588.1594.1 vs. uniprot
Match: D7G664_ECTSI (Eukaryotic initiation factor 4G n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G664_ECTSI)

HSP 1 Score: 298 bits (764), Expect = 9.620e-93
Identity = 197/380 (51.84%), Postives = 241/380 (63.42%), Query Frame = 1 
Query:    1 TKRRMLGNIQFIGELYKKHVLRENVMKTCVEQLLNAERELDSDKHLRALKFKSAEVDVDNLEAMGKLMATIGSTLDQERNTLYMKEIFRLLDRHAANKGVNSRMRFMIRDLDELRRHNWIPRRKQDKAKTLDDIRKEAEADAARGTQQTGRGAPSRGGSSGD-----------FRGGAPQDARQTRRDREXXXXXXXXGPTDRDIRPGGGGDPMRSAPRS---GRLDAQRPGGREQGDSRRDDRRGAGVGGGGRSGXXXXXXXXXXXXXXXXXAEPVEASEKLVNKINGFCNEFVAMKDKKEALQSFDELPGGNGPIPETVTTTLVNTILDGISRERPARLELLRILALEKRLPEAALETALTPIVKAIEDVAIDAPGAE 1098
            TKRRMLGNIQFIGELYKK +L+ENVMKTCVEQLLNA++E+ +D+ L+ALKFK+ +VD DNLEA+GKL+ TIGSTLD  +NTLYMKEIFRL+D+ A NK +NSRMRFMIRDL+ELR+HNW+PRRKQDKAKTLDDIRKEAEA+A  G    G   P R G               FR   P  +      R             R I  GGG      AP +   GR D +     EQ + R   R GA                           +  E SEKLVNKINGF NEFV+ KDK EAL SFDELP G  PIPETV+  ++  +L+G   ERPARL+LLR+LA +++LP+ ALE  L P+++ I D+A+D+P A+
Sbjct:   20 TKRRMLGNIQFIGELYKKSMLKENVMKTCVEQLLNAKKEVATDRTLKALKFKNMDVDEDNLEALGKLIRTIGSTLDTSKNTLYMKEIFRLMDKIANNKSINSRMRFMIRDLEELRKHNWVPRRKQDKAKTLDDIRKEAEAEARGG----GPPGPKREGLLPSRLASQALCCLCFRCVPPLISHHHPLLRPFFVFTLVRLWGLRVIETGGGAPRAAEAPMTLGAGRGDRKTL---EQREGR--SREGAAA---------AARLTEGRLRPTTPGLKVEEPSEKLVNKINGFVNEFVSEKDKDEALLSFDELPAG--PIPETVSKIIIEKVLEGKPAERPARLDLLRLLASKQKLPQDALERTLDPMIEFITDIAVDSPNAD 379
[Close]
BLAST of mRNA_S-dermatodea_contig12588.1594.1 vs. uniprot
Match: A0A6H5KBU9_9PHAE (MI domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU9_9PHAE)

HSP 1 Score: 295 bits (754), Expect = 5.680e-87
Identity = 217/386 (56.22%), Postives = 257/386 (66.58%), Query Frame = 1 
Query:    1 TKRRMLGNIQFIGELYKKHVLRENVMKTCVEQLLNAERELDSDKHLRALKFKSAEVDVDNLEAMGKLMATIGSTLDQERNTLYMKEIFRLLDRHAANKGVNSRMRFMIRDLDELRRHNWIPRRKQDKAKTLDDIRKEAEADAARGTQQTGRGAPSRGGSS-----GDFRGG--APQDARQTRRDREXXXXXXXXGPTDRDIRPGGGGDPMRSAPRSGRLDAQRPGGREQGDSRRDDRRGAGVGGGGRSGXXXXXXXXXXXXXXXXX------------AEPVEASEKLVNKINGFCNEFVAMKDKKEALQSFDELPGGNGPIPETVTTTLVNTILDGISRERPARLELLRILALEKRLPEAALETALTPIVKAIEDVAIDAPGAEK 1101
            TKRRMLGNIQFIGELYKK +L+ENVMKTCVE LLNA++E+ +D+ L+ALKFK+ +VD DNLEA+GKL+ TIGSTLD  +NTLYM EIFRL+D+ A NK +NSRMRFMIRDL+ELR+HNW+PRRKQDKAKTLDDIRKEAEA+A       G G P RGGS       DFRGG   PQD R  RR   XXXXXXXX P D      G                                            XXXXXXXXXXXXXXXX             A+  E SEKLVNKINGF NEFV+ KDK EAL SFDELP G  PIPETV+  ++  +L+G   ERPARL+LLR+LA +++LP+ ALE  L P+++ I D+A+D+P A+K
Sbjct:  576 TKRRMLGNIQFIGELYKKSMLKENVMKTCVEHLLNAKKEVGADRTLKALKFKNGDVDEDNLEALGKLIRTIGSTLDTSKNTLYMTEIFRLMDKIANNKSINSRMRFMIRDLEELRKHNWVPRRKQDKAKTLDDIRKEAEAEAR------GGGPPGRGGSXXXXXXSDFRGGQGGPQDVRAARR--XXXXXXXXXXPIDGFQHQRGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGPSAAPTSLASPAQVEEPSEKLVNKINGFVNEFVSEKDKDEALLSFDELPAG--PIPETVSKIIIEKVLEGKPAERPARLDLLRLLASKQKLPQDALERTLDPMIEFITDIAVDSPNADK 951
[Close]
BLAST of mRNA_S-dermatodea_contig12588.1594.1 vs. uniprot
Match: A0A7S1ZS79_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZS79_TRICV)

HSP 1 Score: 117 bits (292), Expect = 1.650e-25
Identity = 66/152 (43.42%), Postives = 98/152 (64.47%), Query Frame = 1 
Query:    4 KRRMLGNIQFIGELYKKHVLRENVMKTCVEQLLNAERELDSDKHLRALKFKSAEVDVDNLEAMGKLMATIGSTLDQERNTLYMKEIFRLLDRHAANKGVNSRMRFMIRDLDELRRHNWIPRRKQDKAKTLDDIRKEAEADAARGTQQTGRGA 459
            K++MLGNI+FIGELYKK +LRE +M+ C+  LL  E   +  K  R +  +  E+D ++ EA+  L  TIG T+D ++   YM   F  + + + +K ++SR RFM +DL ELR++ W  RRKQ+ AKTLD+IRK+ E +  +  QQ+  GA
Sbjct:  306 KKQMLGNIRFIGELYKKDMLREKIMRYCIHSLLKLE---EDQKSGRLVDSRDEEMDEEDHEALCNLFITIGKTIDHQKARHYMDVYFGKMAKLSVDKKLSSRYRFMYKDLIELRQNRWKSRRKQETAKTLDEIRKDIEREERKQAQQSTGGA 454
[Close]
BLAST of mRNA_S-dermatodea_contig12588.1594.1 vs. uniprot
Match: A0A7S2YBQ4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YBQ4_9STRA)

HSP 1 Score: 117 bits (292), Expect = 6.780e-25
Identity = 66/165 (40.00%), Postives = 105/165 (63.64%), Query Frame = 1 
Query:    4 KRRMLGNIQFIGELYKKHVLRENVMKTCVEQLLNAERELDSDKHLRALKFKSAEVDVDNLEAMGKLMATIGSTLDQERNTLYMKEIFRLLDRHAANKGVNSRMRFMIRDLDELRRHNWIPRRKQDKAKTLDDIRKEAEADAARGTQQTGRGAPSRGGSSGDFRGG 498
            K++MLGNI+FIG+L+KK++L+E +M+ C+  LL  E      K+         ++D ++ EA+  +  TIGST+D+  +  +M   F  +   A +K + SR RFM +DL +LR++NW+PRRK++KAKTL++IRK+ E +  +  +Q+ R    RG S   FRGG
Sbjct:  672 KKQMLGNIKFIGQLFKKNLLKEKIMRYCIASLLKLEELQIKSKNPEYKDTGDLDMDEEDHEAICSMFTTIGSTIDKPASATFMAVCFNKISDLATDKNLPSRSRFMYKDLIDLRKNNWVPRRKEEKAKTLEEIRKDVEREERKQAEQSMRENNQRGQS---FRGG 833
[Close]
BLAST of mRNA_S-dermatodea_contig12588.1594.1 vs. uniprot
Match: A0A7S4D9X6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D9X6_HETAK)

HSP 1 Score: 114 bits (284), Expect = 1.630e-24
Identity = 65/141 (46.10%), Postives = 93/141 (65.96%), Query Frame = 1 
Query:    1 TKRRMLGNIQFIGELYKKHVLRENVMKTCVEQLLNAERELDSDKHLRALKFKSAEVDVDNLEAMGKLMATIGSTLDQERNTLYMKEIFRLLDRHAANKGVNSRMRFMIRDLDELRRHNWIPRRKQDKAKTLDDIRKEAEAD 423
            TK+RMLGNI+FIGELYKK +L+EN+M  C+  LL   ++  + K     K K    D ++LEA+GKLMATIG  +D  +    M+  F  L +      ++S+ RFMI+DL +LR+ NW+PRR++ +AKT+ +IRKEA  D
Sbjct:  289 TKKRMLGNIRFIGELYKKDMLKENIMHECLLSLLKIRQDEAAGK-----KGKLVIPDDEDLEALGKLMATIGKKIDNPKAQEQMRLYFDKLAKLGKEPKLSSKNRFMIKDLFDLRKDNWVPRREEAQAKTIKEIRKEAMKD 424
[Close]
BLAST of mRNA_S-dermatodea_contig12588.1594.1 vs. uniprot
Match: B8CDK4_THAPS (Eukaryotic translation initiation factor (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CDK4_THAPS)

HSP 1 Score: 114 bits (284), Expect = 3.780e-24
Identity = 113/369 (30.62%), Postives = 171/369 (46.34%), Query Frame = 1 
Query:    4 KRRMLGNIQFIGELYKKHVLRENVMKTCVEQLLNAERELDSDKHLRALKFKSAEVDVDNLEAMGKLMATIGSTLDQERNTLYMKEIFRLLDRHAAN-KGVNSRMRFMIRDLDELRRHNWIPRRKQDKAKTLDDIRKEAE----ADAARGTQQTGRGAPSRGGSSGDFRGGAPQDARQTRRDREXXXXXXXXGPTDRDIRPGGGGDPMRSAPRSGRLDAQRPGGREQGDSRRDDRRGAGVGGGGRSGXXXXXXXXXXXXXXXXXAEPVEASEKLVNKINGFCNEFVAMKDKKEALQSFDELPGGNGPIPETVTTTLVNTILDGISRERPARLELLRILALEKRLPEAALETALTPIVKAIEDVAIDAPGA 1095
            K++MLGN++FIGELYK  +L+E +M+ C++ L+  E + D D+              ++ EA+  L  TIG T+D  +   YM+  F+ +   + + K ++SR RFM +DL E+R + W  RRK + AKTLD+IRK+AE    A+A R  QQ        GGS      G   D+R +R                        G P     R+ R D+QR                 G+GG                  XXXX   V   EKL  +     NEF    D+KE L S DE+ G +    +TV    V   +D  + ER A +E++ IL    +L ++ ++  +  +V+ I+   +D+PGA
Sbjct:  168 KKQMLGNVKFIGELYKLGMLKEKIMRFCIQSLMKLEEDDDMDE--------------EDHEALCNLFITIGKTIDNPKAQPYMQNYFQKISALSDDTKNLSSRSRFMYKDLIEMRANGWQTRRKLETAKTLDEIRKDAEREERAEAQRAAQQNS------GGSYRXXXRGGGYDSRDSR------------------------GPPRGGDVRNERNDSQR-----------------GIGG------------------XXXXXXEVFTKEKLELRAKNMRNEFKEGHDEKELLMSMDEVLG-SPDAGKTVVQVNVEYAIDCKAPERQALIEMIVILFKNGKLSKSDVQVPMLDMVEFIDSFVVDSPGA 456
[Close]
BLAST of mRNA_S-dermatodea_contig12588.1594.1 vs. uniprot
Match: A0A7S2UYN7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYN7_9STRA)

HSP 1 Score: 112 bits (281), Expect = 1.280e-23
Identity = 64/141 (45.39%), Postives = 91/141 (64.54%), Query Frame = 1 
Query:    1 TKRRMLGNIQFIGELYKKHVLRENVMKTCVEQLLNAERELDSDKHLRALKFKSAEVDVDNLEAMGKLMATIGSTLDQERNTLYMKEIFRLLDRHAANKGVNSRMRFMIRDLDELRRHNWIPRRKQDKAKTLDDIRKEAEAD 423
             KRRMLGN++FIGELYKK +L+EN+M  C+ +LL    E   D H + +K    E    +LE++G+LM TIG  LD  +    +   F  L R A+ K + SR++FMI+DL +LR + W PRRK++K KT+  IR++AE D
Sbjct:  442 VKRRMLGNVRFIGELYKKDMLKENIMHECICKLLVLSGE---DPHAKDIKIPDEE----DLESLGRLMTTIGKKLDSGKMHDNVNVYFHKLSRMASFKTLPSRLKFMIKDLIDLRANKWEPRRKEEKMKTISQIRRDAELD 575
[Close]
BLAST of mRNA_S-dermatodea_contig12588.1594.1 vs. uniprot
Match: A0A7S2UPV9_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UPV9_9STRA)

HSP 1 Score: 111 bits (277), Expect = 2.930e-23
Identity = 58/142 (40.85%), Postives = 92/142 (64.79%), Query Frame = 1 
Query:    4 KRRMLGNIQFIGELYKKHVLRENVMKTCVEQLLNAERELDSDKHLRALKFKSAEVDVDNLEAMGKLMATIGSTLDQERNTLYMKEIFRLLDRHAANKGVNSRMRFMIRDLDELRRHNWIPRRKQDKAKTLDDIRKEAEADAA 429
            K++MLGNI+FIGELYKK +LRE +M+ CV  L+  +       ++     +  E+D ++ EA+  L  TIG  +D+     +M+  F+ +D    ++ ++SR RFM +DL ++R HNW PRRK++KAKTLD+IR++A  + A
Sbjct:   73 KKQMLGNIKFIGELYKKEMLREKIMRYCVTSLMKLKEVTTDSGYVDFKNVEDDEMDDEDHEALVNLFTTIGKKIDKPGARDFMRVCFKKIDTFIRDQRLSSRTRFMYQDLVDVRAHNWKPRRKEEKAKTLDEIRQDAAREEA 214
[Close]
BLAST of mRNA_S-dermatodea_contig12588.1594.1 vs. uniprot
Match: A0A7S1D4U0_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D4U0_CYCTE)

HSP 1 Score: 107 bits (267), Expect = 5.170e-23
Identity = 58/139 (41.73%), Postives = 92/139 (66.19%), Query Frame = 1 
Query:    4 KRRMLGNIQFIGELYKKHVLRENVMKTCVEQLLNA-ERELDSDKHLRALKFKSAEVDVDNLEAMGKLMATIGSTLDQERNTLYMKEIFRLLDRHAANKGVNSRMRFMIRDLDELRRHNWIPRRKQDKAKTLDDIRKEAE 417
            K++MLGNI+FIG+LYKK +L+E +M+ C+  LL   E      K+   L     ++D ++ EA   + ATIG T++  + + +++  F  + + + NK +++R RFM +DL ELR++ W PRRKQ+KAKTLD+IRK+ E
Sbjct:  127 KKQMLGNIKFIGQLYKKGLLKEKIMRYCIASLLKLKENPAIQSKNPEYLDKGDMDMDEEDHEAACNMFATIGKTIETPQASSFLRVCFDKMTKLSNNKSLSARSRFMYKDLLELRQNRWEPRRKQEKAKTLDEIRKDVE 265
[Close]
BLAST of mRNA_S-dermatodea_contig12588.1594.1 vs. uniprot
Match: A0A7S2PHU1_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PHU1_9STRA)

HSP 1 Score: 109 bits (273), Expect = 2.060e-22
Identity = 116/379 (30.61%), Postives = 178/379 (46.97%), Query Frame = 1 
Query:    4 KRRMLGNIQFIGELYKKHVLRENVMKTCVEQLLNAERELDSDKHLRALKFKSAEVDVDNLEAMGKLMATIGSTLDQERNTLYMKEIFRLLDRHAANKGVNSRMRFMIRDLDELRRHNWIPRRKQDKAKTLDDIRKEAEADAARGTQQTGRGAPSRGGSSGDFRGGAPQDARQTRRDREXXXXXXXXGP------------TDRD---IRPGGGGDPMRSAPRSGRLDAQR--PGGREQGDSRRDDRRGAGVGGGGRSGXXXXXXXXXXXXXXXXXAEPVEASEKLVNKINGFCNEFVAMKDKKEALQSFDELPGGNGPIPETVTTTLVNTILDGISRERPARLELLRILALEKRLPEAALETALTPIVKAIEDVAIDAP 1089
            K++MLGNI+FIGEL+KK +L+E VM  CV  LL              ++ +   +D ++ EA+ +L ATIG T+D   +   M   F  + + + NK +NSR RFM +DL +LR++NW  RRK++ AKTLD+I+K+ E +     +Q+         ++  +RG              XXXXXXXX               D D     P G G    S P    L  ++  P  R+Q  SR+   R                            + P++  E L  +I G   E++++KD+KE +   +E  G +G   +   T  +   LD    ER A + + +IL  +  LPE + E ALT I++ + D A+D P
Sbjct:  719 KKQMLGNIRFIGELFKKSMLKEPVMHECVMSLLKLRNTSTRKNSYTFVELEDNAMDEEDHEALCQLFATIGKTIDSSGSREAMDAYFAKIAKMSKNKKLNSRSRFMYQDLIDLRKNNWKSRRKEEGAKTLDEIKKDFEREERAAQRQSAV-------ANAGYRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVDEDGFSTVPMGRGRRGSSGPSPSILQRKQMVPPARKQQQSRQQSAR--------------------PSASQKRASAPLDTDE-LKKRIKGVRAEYMSLKDEKEVILCAEEWSGTDG-WSDVFCTESIEKALDCKEDERQAIISMFKILCKKSMLPEKSFEVALTQILEFMNDFAVDIP 1068
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12588.1594.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G664_ECTSI9.620e-9351.84Eukaryotic initiation factor 4G n=1 Tax=Ectocarpus... [more]
A0A6H5KBU9_9PHAE5.680e-8756.22MI domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A7S1ZS79_TRICV1.650e-2543.42Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S2YBQ4_9STRA6.780e-2540.00Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
A0A7S4D9X6_HETAK1.630e-2446.10Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
B8CDK4_THAPS3.780e-2430.62Eukaryotic translation initiation factor (Fragment... [more]
A0A7S2UYN7_9STRA1.280e-2345.39Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S2UPV9_9STRA2.930e-2340.85Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S1D4U0_CYCTE5.170e-2341.73Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S2PHU1_9STRA2.060e-2230.61Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12588contigS-dermatodea_contig12588:2320..7085 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score298.9
Seed ortholog evalue3.2e-78
Seed eggNOG ortholog2880.D7G664
KEGG koko:K03260
KEGG Pathwayko03013,ko05416,map03013,map05416
KEGG ModuleM00428
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0016281,GO:0032991,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.translation initiation factor activity
EggNOG OGsKOG0401@1,KOG0401@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03012,ko03019
Hectar predicted targeting categoryother localisation
Exons6
Model size1104
Cds size1092
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924253.958757-UTR-S-dermatodea_contig12588:2319..23311622924253.958757-UTR-S-dermatodea_contig12588:2319..2331Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12588 2320..2331 +
1694079127.7190423-UTR-S-dermatodea_contig12588:2319..23311694079127.7190423-UTR-S-dermatodea_contig12588:2319..2331Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12588 2320..2331 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924253.96839-CDS-S-dermatodea_contig12588:2331..25051622924253.96839-CDS-S-dermatodea_contig12588:2331..2505Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12588 2332..2505 +
1694079127.7329307-CDS-S-dermatodea_contig12588:2331..25051694079127.7329307-CDS-S-dermatodea_contig12588:2331..2505Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12588 2332..2505 +
1622924253.976467-CDS-S-dermatodea_contig12588:3516..36751622924253.976467-CDS-S-dermatodea_contig12588:3516..3675Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12588 3517..3675 +
1694079127.7435198-CDS-S-dermatodea_contig12588:3516..36751694079127.7435198-CDS-S-dermatodea_contig12588:3516..3675Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12588 3517..3675 +
1622924253.9897301-CDS-S-dermatodea_contig12588:3934..40381622924253.9897301-CDS-S-dermatodea_contig12588:3934..4038Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12588 3935..4038 +
1694079127.7516763-CDS-S-dermatodea_contig12588:3934..40381694079127.7516763-CDS-S-dermatodea_contig12588:3934..4038Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12588 3935..4038 +
1622924254.0000024-CDS-S-dermatodea_contig12588:5227..53531622924254.0000024-CDS-S-dermatodea_contig12588:5227..5353Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12588 5228..5353 +
1694079127.7597349-CDS-S-dermatodea_contig12588:5227..53531694079127.7597349-CDS-S-dermatodea_contig12588:5227..5353Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12588 5228..5353 +
1622924254.0080879-CDS-S-dermatodea_contig12588:6102..64001622924254.0080879-CDS-S-dermatodea_contig12588:6102..6400Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12588 6103..6400 +
1694079127.7682042-CDS-S-dermatodea_contig12588:6102..64001694079127.7682042-CDS-S-dermatodea_contig12588:6102..6400Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12588 6103..6400 +
1622924254.016874-CDS-S-dermatodea_contig12588:6854..70851622924254.016874-CDS-S-dermatodea_contig12588:6854..7085Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12588 6855..7085 +
1694079127.782298-CDS-S-dermatodea_contig12588:6854..70851694079127.782298-CDS-S-dermatodea_contig12588:6854..7085Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12588 6855..7085 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12588.1594.1prot_S-dermatodea_contig12588.1594.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12588 2332..7085 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12588.1594.1

>prot_S-dermatodea_contig12588.1594.1 ID=prot_S-dermatodea_contig12588.1594.1|Name=mRNA_S-dermatodea_contig12588.1594.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=364bp
MLGNIQFIGELYKKHVLRENVMKTCVEQLLNAERELDSDKHLRALKFKSA
EVDVDNLEAMGKLMATIGSTLDQERNTLYMKEIFRLLDRHAANKGVNSRM
RFMIRDLDELRRHNWIPRRKQDKAKTLDDIRKEAEADAARGTQQTGRGAP
SRGGSSGDFRGGAPQDARQTRRDRERDRGGGGGGPTDRDIRPGGGGDPMR
SAPRSGRLDAQRPGGREQGDSRRDDRRGAGVGGGGRSGAGGGASPAAAAA
VPAAAAEPVEASEKLVNKINGFCNEFVAMKDKKEALQSFDELPGGNGPIP
ETVTTTLVNTILDGISRERPARLELLRILALEKRLPEAALETALTPIVKA
IEDVAIDAPGAEK*
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mRNA from alignment at S-dermatodea_contig12588:2320..7085+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12588.1594.1 ID=mRNA_S-dermatodea_contig12588.1594.1|Name=mRNA_S-dermatodea_contig12588.1594.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4766bp|location=Sequence derived from alignment at S-dermatodea_contig12588:2320..7085+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ACGAAGAGGCGAATGCTCGGCAACATCCAGTTCATCGGGGAGCTTTACAA
GAAGCACGTGCTCCGCGAAAACGTGATGAAGACGTGCGTGGAGCAGCTCC
TCAACGCGGAGCGGGAGCTGGACAGCGACAAGCACCTCAGGGCCCTCAAG
TTCAAGAGCGCGGAGGTGGACGTGGACAACCTGGAGGTGAGATTTTTTGG
AGCTCAGGGAGTGGTTTTGAGGGGTGTTGGGAGGGGGAGGGGACGGGAGG
GGGAGGTAGAGTGGGCAAGACCTTTCTTGTATACAAAATCTTCAGTTTTC
AACTAGTAGCGCTTTGAACGTTTTTTTTAGTACAAGTAGCGATTTAGATC
TGCTCTTTGATGCAGAATTCCTACACGATTCGTGGTCCAAAAGGCCTGTA
CCATTTTTGACGCCAAATAACTTGAATTTTTTATCATATAGTGCTGCAGT
TTTTTTTTGCTCCTCTGCTTAACGCTCGCACTCCCGTCCACGCCCCCGCG
CGCGCTCGGCTTCCTCCGTGGTTGAACGCCTGCCGTGGGTACCATCGCCA
CCGTGCTTTCGTAACCCACACATCGTCCTGCCACCGCACACCTCACGGGC
GTAGCCGTGAGTACCCAGTAGTTACATAGCAAGGAACGAACAGCGCTCCG
TGCGTCCTCCCTTCCCCCCCTACGACGCCGTGTTCAATGGCTTACATAAC
ATATAGGGCGTGTAAGAATTGAGTACGCCCCTCCCCCCCCGATCCCCCCC
GACCCATCCCACCCCTACCCCCTAGTGAGACACAACACACATCATCGCCA
TCGCCATAGCCCGCCTATCTTGCTCCTTTTTTTGCCATTTCCTTTGATAT
CGATGGTTGATCTCTTGTGCTCTGCTATCATGCCCCCCCCCCCCGCCCCC
TCCTCCTTTCCCCTCCCCCCACCCCACCCCTCTATTTGGCGTCGCAAACG
CTAGGATGGCGGTGGCTATGATAGCAGCTGGTATGGTACACTCCTTGTGA
AACGCAACCTGGCCTGGCCTGGCCTGGCCGGCGAAAACCCGGCATATCTC
GCTCCGTTCTGGCGTTGTTCGGACGCGTGTGGTCTTTGTCCCGTCTGGGT
CTGGATACGACATGCGTTTTTGACATGAGTACCCCACCGCCCCCCACAAC
GCCCACCCCCACCCCCAAACCCGCCCCCCCCCCCCCCTCGTCCTTAGGCT
ATGGGCAAGCTGATGGCGACGATCGGGTCGACGCTGGACCAGGAGCGGAA
CACGCTGTACATGAAGGAGATTTTCCGGTTGCTGGACAGACACGCCGCAA
ACAAGGGCGTCAACTCCCGCATGAGGTTCATGATTAGGGACCTCGACGAG
CTCAGGGTCAGTTTAGTTTATCACATTTTTTTTTTTTTTTTTTTTTTTGT
TTTTTTTTTTTTGGGTTAAAATCGTTCTGTTTAGCCCTCCCTCCGTTCCG
ACCCTTAACAGTATTATACTATAAAAAATGAGCTTTGCCAAGAATGTATT
GTAATGCATAGGCTCTATGGATGAAATTGGAAATTTAATGGGTTCTTTAT
GTATTCTCTCTCTTTGTTTGTGGTTGTGTGTGTGTTTTTTTGTGGCGGGG
GGTGGGGGATGATAGAGGCACAACTGGATCCCCAGGCGCAAGCAGGACAA
GGCGAAAACGTTGGACGACATCCGGAAAGAGGCTGAGGCGGACGCAGCGA
GGGGAACGCAGCAGACTGGGTGCGTAATTGTATTGTTAACTTCTACTACT
TACAGTACAGTAGGTAGCCACGGCTTACCCGTGAGAGTGTGGGCGGTCGC
TCAACTCTAAAATCAAGGTTTGGGGCTCGACAAAAACAAATAAAGTTGTT
TGGCATCACAAGTCGGTTTAAAAAAATCGTACGATACAGGAGTTTGTTGG
GACAAAATCGTATGTATATATAGGAAAATTGTGTTGGCAGCAAAAGTTCA
AGGGGGGTATTAATTTAATAAAGATCATTATTTTGAATATTTAATAGTGC
CTTCGTTCGCGTATTGCAATGCGGTTATTGGGTGACGGGGCTATTTTGAT
GATGAATAAATTGGACGGACACCCACCATACGATGATTTTCTGCTCTTTT
ATGTAGTTTTTATCACAATCCTGCCGTGGTAAAACAAAAAAAACAAAAAA
CAGGCAGGGGCGGCGGGGGGGGCGGGGGGGGGGGAGGGTGGTGCGGAGGA
CAGGACTTACAAAACGTCGTCCAGGTAAAACCGAAAGACGTTTATTTCCA
CACACAGTAAATCGTACCGTAAGCCTCCATACAATAGGTGCATGCTACTG
TACAGTAGGTTGGACCATCTCTCCTCTTGAAAAAAAAAAGTGGAACCTCA
ACGCTCTCCCTCTTGCGTTTGTTTTTGTTTTTGTTTTTGTTTCATGCTAC
AAGTATGACATAGGGGAAGTATTTAAAGAGGGGAGTATTAATTTTACCAC
ATTTCGGTGAGGGTGCGCGCGCGCACATGCGTACCACGTGCGTGCGTGCG
TGCATTGCCAGCTGCTATGCACCTGCGGGAGGGCTTTGTATTTTACCACC
GCCAGCCCCTTTGTACCGCGAGGAGTAGAGCAGCCGTTCGGGCGCTGTTG
GGTCTGTGAAGTACGTATGGTGCAGGCGGGTGGATCCATCCGCAAAACGA
ACCGGTTTCGGTTGCCAAACGGGTTGATGCCGGCGGAATGAGGATGAGGT
TGAATGGGATTGATTCGCGTGGATTGCGGCCAAGCAGGGTTGTGGTGGCT
ATGATGGGCCTGTCGTCCCCAAGCAAGACAAGTCAACTGACTACTTGTAC
CTCAGGTCCTTTTCCAATTAATGAAGAGCCTTATCAAATCTCCCCCTCCC
CTTCCCTCCCCTCCCACACGCACGCGTGCGAACGAACTCCCTCACCGGTG
TTTTGCAGGAGGGGCGCCCCCTCGAGGGGAGGGAGCTCGGGTGACTTTAG
GGGCGGGGCACCTCAAGACGCACGTCAGACGAGAAGGGATCGAGAAAGGG
ACCGCGGGGGGGGCGGCGGCGGTCCGACGGACAGGTGAACGAATATGTAT
ACAAAATTCGACGTCATCAAAGGTCTCAACTCTTAACCCTTTTGGGACTA
AGCCTGGGGACGAAGCCAATTTTCGGGTAACTGTTGGCTATCACACCATC
ATAGCAAACAGTTACCCGAGAACAGCCTTAGTCCCAACTCAAAAGGGTAT
ATACAGTAGTAGTAGCAAACAGTTACCCGAAGACAGCCTTAGTCCCAAAA
CGGTTAATCGCTTTAATATAAAAAAATACAACGCGGTCTTTCATGAAGGA
AAATATTCCAAACTCTTTTTTTGTTTTGCTGTTATTATGTATCTTTACAT
GCAGCCGATCGATCGGCTTCTCCGCTCGGATCCCGCTAATATTACATATT
ATAATGTATTATAGTGTGACTACTGTATTAATACGAGTATAATAGTTGGT
AGCCACGGCTTGCACGCCCGTGAGTTTGTGCGTTGGTATTGATAAGTGGT
GGATGTATCATATATATACGGCGCATCAAAACACACGCACACACTCACTC
ACTCACTGCCTTTGGCATAATTACATCGTTCACCCACGCAATTCGTTAAA
ACGATATTAACCTTGTTGTTTGTCGTGATGGAATTATACAATAACGCGCA
GCCCCCCCCCCCCCCCCCCCCTTTCCAACCCCCCCCCCCCCCCCAAACCC
AGCTTCCGCGGAGGTGACCGGCGAACCCAGGACAGCAGGCCAGACACAAG
ATTCCAGCCCGGCGGCAGCAGCGGGGGCGGCAGAGATATCCGACCGGGCG
GTGGCGGCGACCCTATGCGATCCGCCCCCAGGAGCGGGCGCCTCGATGCC
CAGCGCCCGGGCGGACGCGAGCAGGGAGACTCCCGTCGAGATGATCGCAG
GGGTGCGGGTGTGGGAGGGGGGGGGCGGAGTGGTGCGGGGGGCGGGGCTT
CGCCAGCTGCGGCGGCGGCGGTGCCGGCCGCGGCAGCGGAGCCGGTGGAA
GCCAGCGAGAAGTTGGTGAACAAGATCAACGGGTTCTGTAACGAGTTCGT
GGCGATGAAGGACAAGAAGGAGGCTCTCCAGGTGTGTGTGTGTTTGCGGT
TGGGTTGTTTATGATGCGCGATCAACGTCCACGATATGTTTGGTTGTTGC
GGCATTTTTTATTATTTATTTTTATTTTTTGCCTTTGTTGTACATGATGT
GTATTGTATTGTATGCTTATTGCATGGTAGGATGTAAAGCTTTGGGGGGG
GGTTCCCCACCTTTTCAAAATGGAAAAGATGGTTCAAGCTAATATATATA
TTACGCCTGTGGAGGCTCTCTTGTTGCATATGATGCTGCCCATGGTTTGA
TGTCATGTACGATGTTATAGGGTTTTAGCACGAGTGTCTTTGCCCTGAAC
GAAACCCCGCCCCCCCCCCTCCTTCCTCTCGAGGGCAGACGCGTGGTCAA
TGGTCTAACAGCTAAGGCATGCAAAACATGAGTACGCCCCCCCCCCTCTC
CCTCGCCCCTCGCCCCTTGTTACCCACCGTCATAGTCCTTCGACGAACTC
CCCGGCGGGAACGGCCCCATCCCGGAGACGGTTACCACGACCCTCGTCAA
CACTATCCTGGACGGCATATCGAGGGAGCGGCCTGCGAGGCTGGAGCTTC
TGCGAATCCTGGCGCTCGAGAAGCGGCTGCCGGAAGCTGCTCTGGAAACT
GCGCTCACCCCCATCGTGAAAGCGATCGAGGACGTGGCCATCGACGCCCC
TGGTGCCGAAAAGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig12588:2320..7085+

>mRNA_S-dermatodea_contig12588.1594.1 ID=mRNA_S-dermatodea_contig12588.1594.1|Name=mRNA_S-dermatodea_contig12588.1594.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2184bp|location=Sequence derived from alignment at S-dermatodea_contig12588:2320..7085+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCTCGGCAACATCCAGTTCATCGGGGAGCTTTACAAGAAGCACGTGCT
CCGCGAAAACGTGATGAAGACGTGCGTGGAGCAGCTCCTCAACGCGGAGC
GGGAGCTGGACAGCGACAAGCACCTCAGGGCCCTCAAGTTCAAGAGCGCG
GAGGTGGACGTGGACAACCTGGAGATGCTCGGCAACATCCAGTTCATCGG
GGAGCTTTACAAGAAGCACGTGCTCCGCGAAAACGTGATGAAGACGTGCG
TGGAGCAGCTCCTCAACGCGGAGCGGGAGCTGGACAGCGACAAGCACCTC
AGGGCCCTCAAGTTCAAGAGCGCGGAGGTGGACGTGGACAACCTGGAGGC
TATGGGCAAGCTGATGGCGACGATCGGGTCGACGCTGGACCAGGAGCGGA
ACACGCTGTACATGAAGGAGATTTTCCGGTTGCTGGACAGACACGCCGCA
AACAAGGGCGTCAACTCCCGCATGAGGTTCATGATTAGGGACCTCGACGA
GCTCAGGGCTATGGGCAAGCTGATGGCGACGATCGGGTCGACGCTGGACC
AGGAGCGGAACACGCTGTACATGAAGGAGATTTTCCGGTTGCTGGACAGA
CACGCCGCAAACAAGGGCGTCAACTCCCGCATGAGGTTCATGATTAGGGA
CCTCGACGAGCTCAGGAGGCACAACTGGATCCCCAGGCGCAAGCAGGACA
AGGCGAAAACGTTGGACGACATCCGGAAAGAGGCTGAGGCGGACGCAGCG
AGGGGAACGCAGCAGACTGGAGGCACAACTGGATCCCCAGGCGCAAGCAG
GACAAGGCGAAAACGTTGGACGACATCCGGAAAGAGGCTGAGGCGGACGC
AGCGAGGGGAACGCAGCAGACTGGGAGGGGCGCCCCCTCGAGGGGAGGGA
GCTCGGGTGACTTTAGGGGCGGGGCACCTCAAGACGCACGTCAGACGAGA
AGGGATCGAGAAAGGGACCGCGGGGGGGGCGGCGGCGGTCCGACGGACAG
GAGGGGCGCCCCCTCGAGGGGAGGGAGCTCGGGTGACTTTAGGGGCGGGG
CACCTCAAGACGCACGTCAGACGAGAAGGGATCGAGAAAGGGACCGCGGG
GGGGGCGGCGGCGGTCCGACGGACAGAGATATCCGACCGGGCGGTGGCGG
CGACCCTATGCGATCCGCCCCCAGGAGCGGGCGCCTCGATGCCCAGCGCC
CGGGCGGACGCGAGCAGGGAGACTCCCGTCGAGATGATCGCAGGGGTGCG
GGTGTGGGAGGGGGGGGGCGGAGTGGTGCGGGGGGCGGGGCTTCGCCAGC
TGCGGCGGCGGCGGTGCCGGCCGCGGCAGCGGAGCCGGTGGAAGCCAGCG
AGAAGTTGGTGAACAAGATCAACGGGTTCTGTAACGAGTTCGTGGCGATG
AAGGACAAGAAGGAGGCTCTCCAGAGATATCCGACCGGGCGGTGGCGGCG
ACCCTATGCGATCCGCCCCCAGGAGCGGGCGCCTCGATGCCCAGCGCCCG
GGCGGACGCGAGCAGGGAGACTCCCGTCGAGATGATCGCAGGGGTGCGGG
TGTGGGAGGGGGGGGGCGGAGTGGTGCGGGGGGCGGGGCTTCGCCAGCTG
CGGCGGCGGCGGTGCCGGCCGCGGCAGCGGAGCCGGTGGAAGCCAGCGAG
AAGTTGGTGAACAAGATCAACGGGTTCTGTAACGAGTTCGTGGCGATGAA
GGACAAGAAGGAGGCTCTCCAGTCCTTCGACGAACTCCCCGGCGGGAACG
GCCCCATCCCGGAGACGGTTACCACGACCCTCGTCAACACTATCCTGGAC
GGCATATCGAGGGAGCGGCCTGCGAGGCTGGAGCTTCTGCGAATCCTGGC
GCTCGAGAAGCGGCTGCCGGAAGCTGCTCTGGAAACTGCGCTCACCCCCA
TCGTGAAAGCGATCGAGGACGTGGCCATCGACGCCCCTGGTGCCGAAAAG
TGATCCTTCGACGAACTCCCCGGCGGGAACGGCCCCATCCCGGAGACGGT
TACCACGACCCTCGTCAACACTATCCTGGACGGCATATCGAGGGAGCGGC
CTGCGAGGCTGGAGCTTCTGCGAATCCTGGCGCTCGAGAAGCGGCTGCCG
GAAGCTGCTCTGGAAACTGCGCTCACCCCCATCGTGAAAGCGATCGAGGA
CGTGGCCATCGACGCCCCTGGTGCCGAAAAGTGA
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