mRNA_S-dermatodea_contig12587.1593.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12587.1593.1
Unique NamemRNA_S-dermatodea_contig12587.1593.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12587.1593.1 vs. uniprot
Match: D8LFB4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFB4_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 8.120e-11
Identity = 49/119 (41.18%), Postives = 65/119 (54.62%), Query Frame = 1 
Query:    7 TVDQP-ASTWAIHVTNSDLISIVNNTTTGTRGIFL----VSGSSPQVTGNTMDLSS-TSMRVRTTDTMYSGNMGDGVYPLNNANSKVGLRTQGSGCFNSESESGDSAVQDYIDLKTCPL 345
            TVDQ  +S WAI V   D   +  N  TG++ + L      G+SP V  NT+   + TS+RVRT +T YSGN GDG     +  S++GL    +GCF  +S S DS V  YI  + C L
Sbjct:   74 TVDQEDSSAWAIFVQRPDGTEVSGNQITGSKSLILRDDLEGGASPTVNSNTIQTPTLTSVRVRTANTHYSGNSGDGRC---DGCSRIGLVASSTGCFTQDSASSDSEVDAYITDQQCAL 189
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12587.1593.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LFB4_ECTSI8.120e-1141.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12587contigS-dermatodea_contig12587:563..4195 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size881
Cds size204
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12587.1593.1prot_S-dermatodea_contig12587.1593.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12587 2350..3662 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924253.8842955-UTR-S-dermatodea_contig12587:562..6281622924253.8842955-UTR-S-dermatodea_contig12587:562..628Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12587 563..628 +
1694079127.6486313-UTR-S-dermatodea_contig12587:562..6281694079127.6486313-UTR-S-dermatodea_contig12587:562..628Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12587 563..628 +
1622924253.8964005-UTR-S-dermatodea_contig12587:2271..23491622924253.8964005-UTR-S-dermatodea_contig12587:2271..2349Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12587 2272..2349 +
1694079127.6632001-UTR-S-dermatodea_contig12587:2271..23491694079127.6632001-UTR-S-dermatodea_contig12587:2271..2349Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12587 2272..2349 +
1622924253.9232185-UTR-S-dermatodea_contig12587:3662..41951622924253.9232185-UTR-S-dermatodea_contig12587:3662..4195Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12587 3663..4195 +
1694079127.7100146-UTR-S-dermatodea_contig12587:3662..41951694079127.7100146-UTR-S-dermatodea_contig12587:3662..4195Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12587 3663..4195 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924253.9061892-CDS-S-dermatodea_contig12587:2349..23751622924253.9061892-CDS-S-dermatodea_contig12587:2349..2375Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12587 2350..2375 +
1694079127.6756432-CDS-S-dermatodea_contig12587:2349..23751694079127.6756432-CDS-S-dermatodea_contig12587:2349..2375Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12587 2350..2375 +
1622924253.9157147-CDS-S-dermatodea_contig12587:3484..36621622924253.9157147-CDS-S-dermatodea_contig12587:3484..3662Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12587 3485..3662 +
1694079127.691808-CDS-S-dermatodea_contig12587:3484..36621694079127.691808-CDS-S-dermatodea_contig12587:3484..3662Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12587 3485..3662 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12587.1593.1

>prot_S-dermatodea_contig12587.1593.1 ID=prot_S-dermatodea_contig12587.1593.1|Name=mRNA_S-dermatodea_contig12587.1593.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=68bp
MDLSSTSMRVRTTDTMYSGNMGDGVYPLNNANSKVGLRTQGSGCFNSESE
SGDSAVQDYIDLKTCPL*
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mRNA from alignment at S-dermatodea_contig12587:563..4195+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12587.1593.1 ID=mRNA_S-dermatodea_contig12587.1593.1|Name=mRNA_S-dermatodea_contig12587.1593.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3633bp|location=Sequence derived from alignment at S-dermatodea_contig12587:563..4195+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCTGCACCGTGGACCAGCCCGCCTCTACCTGGGCGATTCACGTGACCAA
CTCCGATCTTATCTCGGTGAGTGCAGCCGTTTCGCCGCCTTGTTGTGTAG
GTGTACCGCGCAAACTGTTGAAGGAGGCAGCACGATTTCCGTAACAACAG
CTCTGCGCTGTTGACGATGACGATGTCATCGCCTGACGAGGAGAAATAGG
AGAGTTTTGGCAATATGCTGAGACTCGTGGAAACACCGAAGTCAGCTTCG
CTCTGTCGTATCACACACAGATAGGTACCAGGTACACGATAACAGGTTCG
CCCCTTTTGGCCGGGTACCCTCGCTTGGTGTAGACCTGGTCCGACGCGTT
TCGCGATGGAACCCCTACGTTTTTTCCCGCTTTTGGCGTTGACGTCGAGT
TTTAGGAACTTTCGTGTGGTCTTTAGGTTTCTGCCCGAAATCGTCGGATA
ACCTCTTTACGTTGTTGACCGTGACGCCGTGAACCGCATTTTCCGCACAC
ACCGCGTCATTATTATAGTACGATTCTGTTTTTATGTTCGTAGGATCGGC
GAAACAGCTGCCGTTTTCGGCGCCTTCCGCTCGTTCTTGTGTTATTTGCT
ACCTTTTCGTCACGATACCGCACTACCATGCAGTGTAAGCTTGTGGGTTT
TTTCGTGTTAAGGTTTCTTCACAACAACCTCCAACTCCTACTTATGTCGA
TCGTGTTATAGTGTTAACGCCACCGAGAGAGGCATCTTTGCCTCACAGTA
GAGGTACGGGAGTGGAATGAGATTTCGAGTTGGATCAAAGTTCTTCAGAA
TGACGCCGCCCGTTTTACCTGTTTATGAGAGCCGTATCTTCCTTCCACTA
TTTGGCACCAGGTAGCTCGTAATACTCGTAGTATGCTGTAACTGCATATA
CGGCCCTCAGGGTGGGCTAGTGTCATAGTGTTAGGTAGGTATTATATATA
TGGGGGCGCGTGAATTCTATAGTGATATAGTGATGATAGGTAGGCGTTAT
ATATATGAGGACGTGAGTCCTCATATTAGGTCGTTAGTATATGACGGGTC
TCAGCTGCTGTCAGCCCGCCCCGTCTGTTCAGACCTCCTTTGAGCTAGGG
ACGCTCCCGACCTATTGTAATCAAGCTCTAGTAGACACCAACGTGAGTGA
GAGTCTAGAAGCATTAGAGACAACTAACATCCTTCATCATCGTAAAGGAT
CAGTCTCCTTTACATACACGGGCAGATGCATGCATTGCTATCGGTGATCC
TTTTGTTGACGATATCAGTGCATGGCGTGGACTGGCACCATGGTGGCCAC
CCACCACCTTATTTTTTGTTGACAATTGTAAACATGCATGCATGTTTTCT
ACCCATTGCGTCCCTGCCAGCGCGCCACATCGAGCTGCGGATGACGGCGC
ACGTCACCATATACATTTTACGCTTGCTGCAAGTATCGAGCCAGCGCGAA
CGGAAAGCAGCACCCCGAAAGCTATCAAGCTTGTCGCGCGTTTCACCAAG
TGCGCATTATCTTCCACACCCTGTAACCACGGCTGACGATAATCGCTCGA
TTGACAGCAACAGCACTCCCAATCCCTCCCTCCGGGATCATGTCGTTTTT
TCAACGGCTAGGACGCATCAGACGTGAACCAGATGTGAGCCCCCGCCCAC
CCCCCCTACCCCCCCCCATTTCCGCATTTCACTATGTAATTGTTCCAACC
CTGTTGTAGATCGTCAATAATACCACCACGGGGACACGGGGCATCTTCCT
GGTTAGCGGTTCTTCGCCCCAAGTGACTGGCAACACCATGGACCTTTCCT
CCACCTCCATGCGGTAAGTTGCTGTCGAAACATCTCCCTGCCTCTCTCGT
CGCTGATTTGTTTCTCGAGACCCGTACAAGAGCAGAACGGCGACCGCAGT
CGAGCTCCCGTGCTCCATGCGCCCAGGTAAAAACGTGAGACGCAACACTA
CTGTGTGTCTCGGTTTTTTTTAATCGCGAACTTTATGACCTCGCTTTCGG
AAGAAGAAGCTTATAGCTTTTCCACGCTCGGTTGGTTCGTCGGAGTTGAG
GAGGTCCAACTCGGTTATCCCCGCGAGTCGCTTGCTCTTTATCGGTGGCA
GAATGGAATGGAACCGCGCAGCAGACGGTCGTGAAGCCGTGCCTGCTCTT
GAAAGGTCGGCCCGCCCTTCGGGGAGCAATTCTCCTTTCGGGACTGCGTT
CTTTTTCGCCCGTTCCCGTCACGGCAGTCAGTACCGGTGCATATGCACGC
ACAACAAGAGCGCACTGTACCGTGTATGCCCCCAGCTACAAGCCAAGCTT
GGCAAATGGGTTACGATAGATAATTACTCCACCGCCAATACGGCGAAGAA
CGCCAACCGTTCCGTTCAGAAACCCTGTTGAACGCGTGGAATGATGAAAA
AAAAGTCAAAAGTGCGGGAAGATGGTGACAATAAATGACCTCAGTCCCAA
AAAACATCAGGTTTTATACTCTTTTTTTTTTGCGACTGAACCTGTTTTCT
TCGGGGGTTTGACCATCTGCCCCTCATCGCAGGTCGCATCGAACCATGAC
CGAACGGCGGCTAATCCTCCCCGTAAAATAGCCGCGCGGCGAAAATAAAT
TGATGGTGAACCTGCCAACGCTTACAGCAGTAGCTTGCATGTGCACGCTG
GTTGCCGCACTTGTGCGTGCACCCCGTCAACGCGATACACATATACCCGT
GGTGACGCTAGTCGGCGCTAAAAAACGGAGACTTACTAATGCACTAGTTG
TCCCAAATAAATTTAATTTTGCCTCATGACTGACGATGTTTAGCTCTACG
TGCGTGGCGCCAACTCAACCGTCGGGGACACCCTCGAACGCTCTAGGGTC
GCCGATTGATTTTTCCGCTCCCGGGTGCGCCTTACCGGCTACCTCCCCCC
CTCCCCCCCCTCCCACCGCCAGCGTGAGGACAACCGATACGATGTATTCA
GGGAACATGGGAGATGGTGTGTACCCGCTCAATAACGCCAACTCCAAAGT
TGGTCTCCGAACGCAAGGAAGCGGGTGCTTCAATTCCGAATCGGAATCGG
GCGATTCTGCGGTTCAGGACTACATCGACCTCAAGACGTGTCCGCTATAG
TTTGTCCGCGAGCGAGCGATTGGTCGGCATGACCCGTTTTTGATCGGCCC
GCCCCAAGCGGCGATGGGCCTGGCGATCGCCGCAAACCGACGCGATGCGA
CGTCGGTCGCATATATGATGACTGCTCCTGCCGTGCTTTTGGTTGCGCGA
TAACCCTTCTGGGACTGGGTCATTTTAAGGGGTTAGGCCTTCTGCCCGCA
CCTTTTTTCGCATCGTAACAGCTATTGTTGTACTCTACCGCGGCTTCTCT
TGGCTCTTGTAATGATAGTGGCGGTACACTAGAAAAGCGTCCCCCTTCTG
CCACGCTTATCAATAGCTCCCATGCACGATAGTATATAGTATATGGTATA
TAGTATACACGGTGCACTCGTACGTGCAGCCTTATCGCCCCTACCCGCAG
TGACAATATTCGGCAAAAAAAAGGATATACTAATAGTATAGACTCGGTTG
CAAAAGGGTTTAGACTTGTTCAGTACAAGAGGTCTCGTTTTGGTGAAGAA
ATTCAGGGGGGAATATCTCGCCTCGCAAATGAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig12587:563..4195+

>mRNA_S-dermatodea_contig12587.1593.1 ID=mRNA_S-dermatodea_contig12587.1593.1|Name=mRNA_S-dermatodea_contig12587.1593.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at S-dermatodea_contig12587:563..4195+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGACCTTTCCTCCACCTCCATGCGATGGACCTTTCCTCCACCTCCATG
CGCGTGAGGACAACCGATACGATGTATTCAGGGAACATGGGAGATGGTGT
GTACCCGCTCAATAACGCCAACTCCAAAGTTGGTCTCCGAACGCAAGGAA
GCGGGTGCTTCAATTCCGAATCGGAATCGGGCGATTCTGCGGTTCAGGAC
TACATCGACCTCAAGACGTGTCCGCTATAGCGTGAGGACAACCGATACGA
TGTATTCAGGGAACATGGGAGATGGTGTGTACCCGCTCAATAACGCCAAC
TCCAAAGTTGGTCTCCGAACGCAAGGAAGCGGGTGCTTCAATTCCGAATC
GGAATCGGGCGATTCTGCGGTTCAGGACTACATCGACCTCAAGACGTGTC
CGCTATAG
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