mRNA_S-dermatodea_contig12579.1588.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig12579.1588.1 vs. uniprot
Match: A0A6H5KNI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNI6_9PHAE) HSP 1 Score: 99.0 bits (245), Expect = 2.260e-18 Identity = 58/143 (40.56%), Postives = 83/143 (58.04%), Query Frame = 1
Query: 1 GSSPCLEAFIVALNEACG--RKGWYVSTMQLQLASLELCGACRSVTTLHLTITSGTPTHLW---EEKESSDFRKAKQVRSTRVPVLRPYKVTWKLRTSWLMQKHRLENRERLP---SYEHRLPMIVDRVVWPRGLKGLVLNAS 405
G+S CL+AF+VALN+AC K WYVST++LQL SLE+CGACR V TLH+ + TP LW + +++ R K S+RVPV++ + +TW L L Q+ E R + H ++ VWP+ LK +V +
Sbjct: 5 GNSKCLDAFVVALNQACDGQEKRWYVSTLELQLVSLEVCGACRRVQTLHVRVKPQTPPSLWFPSQNHTTTNNRSPKVCISSRVPVVQAFGLTWALPMGVLQQRSATEVRSGSGCRRANTHSSAASLESAVWPQRLKRMVFESD 147
BLAST of mRNA_S-dermatodea_contig12579.1588.1 vs. uniprot
Match: D7FT95_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT95_ECTSI) HSP 1 Score: 95.1 bits (235), Expect = 2.700e-18 Identity = 63/147 (42.86%), Postives = 81/147 (55.10%), Query Frame = 1
Query: 1 GSSPCLEAFIVALNEACGRKGWYVSTMQLQLASLELCGACRSVTTLHLTITSGTPTHLWEEKESS-DFRKAKQVRSTRVPVLRPYKVTWKLRTSWLMQK-----HRLENRERLPSYEHRLPMIVDRVVWPRGLKGLVLNASFNQTVE 423
G S CL+A I+ALN+A G + WY STMQLQLASLELC +CRS+ L L + GTPT LW ++ + R K+ TRVPV+R VTWKL L + P ++ LP + WP L L L FN++VE
Sbjct: 8 GPSRCLDALIIALNQASGGE-WYTSTMQLQLASLELCASCRSMHLLKLNVQHGTPTRLWRGTATTRETRSVKRRNVTRVPVVRARTVTWKLPGLALRNMTGDAWSEVTTFSLGPGFDDDLPRGIQ---WPEKLTLLGLGPGFNRSVE 150
BLAST of mRNA_S-dermatodea_contig12579.1588.1 vs. uniprot
Match: D7G241_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G241_ECTSI) HSP 1 Score: 90.5 bits (223), Expect = 5.430e-17 Identity = 60/141 (42.55%), Postives = 75/141 (53.19%), Query Frame = 1
Query: 1 GSSPCLEAFIVALNEACGRKGWYVSTMQLQLASLELCGACRSVTTLHLTITSGTPTHLWEEKES------SDFRKAKQVRS-TRVPVLRPYKVTWKLRTS--WLMQKHRLENRERLPSYEHRLPMIVDRVVWPRGLKGLVL 396
G S CLEAF+VAL+ C + WY ST QLQLASL+LC ACR V TL L++ TP +LW E + +K R+ TRVP P +V WKLR L +K N + L + + D WP GLK L L
Sbjct: 8 GDSQCLEAFVVALDLTCDGEKWYASTQQLQLASLDLCKACRGVPTLALSVERSTPEYLWAEAARGPRGRLTGEKKPPAARTRTRVPPFGPRRVMWKLRARELGLARKELWANVQCLLFTGYHNDWVCDGFSWPTGLKRLDL 148
BLAST of mRNA_S-dermatodea_contig12579.1588.1 vs. uniprot
Match: A0A6H5LIJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LIJ3_9PHAE) HSP 1 Score: 92.8 bits (229), Expect = 1.960e-16 Identity = 55/141 (39.01%), Postives = 81/141 (57.45%), Query Frame = 1
Query: 13 CLEAFIVALNEAC--GRKGWYVSTMQLQLASLELCGACRSVTTLHLTITSGTPTHLWEEKESSDFRKAKQVR---STRVPVLRPYKVTWKLRTSWLMQKHRLENRERLPSYEHRLPMIVD--------RVVWPRGLKGLVL 396
CL+AF++AL++AC G K WY ST++LQL SL+LC ACR+ + LH+ + TP LW + + + S+RVPV+R ++TW L L++K +E L ++ RL ++ VVWPRGL LVL
Sbjct: 11 CLDAFVIALSQACEGGEKRWYASTLELQLTSLDLCRACRTTSILHVHVDDQTPRSLWSSRTAQTRPNTRSWNLHISSRVPVVRALRLTWALSMEALLRKAAIE----LWTWSERLELLGSSCVSSLGSEVVWPRGLTQLVL 147
BLAST of mRNA_S-dermatodea_contig12579.1588.1 vs. uniprot
Match: D7FTK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK8_ECTSI) HSP 1 Score: 88.2 bits (217), Expect = 3.290e-16 Identity = 58/141 (41.13%), Postives = 72/141 (51.06%), Query Frame = 1
Query: 1 GSSPCLEAFIVALNEACG--RKGWYVSTMQLQLASLELCGACRSVTTLHLTITSGTPTHLWEEKESSDF---RKAKQVRSTRVPVLRPYKVTWKLRTSWLMQKHRLENR---ERLPSYEHRLPMIVDRVVWPRGLKGLVLN 399
G L+ IVALN+AC K WYVST++LQL SLELCGACRS LH+ + TP LW + S R + S RVP ++ TW L L Q+ E + ER H V+ VVWP LK LV +
Sbjct: 85 GGGSSLDTLIVALNQACDGQEKRWYVSTLELQLVSLELCGACRSAQLLHVFVREDTPPTLWSSRTSRTTPSQRSPEVCTSNRVPAVQALCWTWALPMDRLPQRAAAEPQPVTERRLQDGHSFAASVESVVWPESLKRLVFS 225
BLAST of mRNA_S-dermatodea_contig12579.1588.1 vs. uniprot
Match: A0A6H5JFC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFC0_9PHAE) HSP 1 Score: 89.4 bits (220), Expect = 4.020e-16 Identity = 58/146 (39.73%), Postives = 79/146 (54.11%), Query Frame = 1
Query: 1 GSSPCLEAFIVALNEACGRKGWYVSTMQLQLASLELCGACRSVTTLHLTITSGTPTHLWE-EKESSDFR-----KAKQVRSTRVPVLRPYKVTWKLRTSWLMQKHRLENRERLPSYEHRLPMIVDRVVWPRGLKGLVLNASFNQTV 420
G S CL+AF VALN+AC GWYVST QLQL+SL C ACRSV T+HL + TP L+ + +++ R +K+V + RVP LR KVTW+L + L + +D VW G++ L L F+Q +
Sbjct: 26 GPSRCLDAFKVALNQACDGGGWYVSTEQLQLSSLPFCVACRSVPTMHLKVDRSTPARLFSGDDDAAAVRDKGHGSSKRVMAARVPALRARKVTWQLSGETPRCTGVGLSSVELFVLGDAVNDSMDEAVWSDGMRSLSLGQMFDQPI 171
BLAST of mRNA_S-dermatodea_contig12579.1588.1 vs. uniprot
Match: A0A6H5JG83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG83_9PHAE) HSP 1 Score: 90.1 bits (222), Expect = 9.860e-16 Identity = 64/145 (44.14%), Postives = 79/145 (54.48%), Query Frame = 1
Query: 28 IVALNEACGRKGWYVSTMQLQLASLELCGACRSVTTLHLTITSGTPTHLWEE--KESSDFRKAKQV-----RST--RVPVLRPYKVTWKLRTSWLMQ--KHRLENRERLPSYE--HRLPMIVDRVVWPRGLKGLVLNASFNQTVE 423
+VALNE G K WY+ST+QLQLAS+E C ACRSV+TLHLT+ GTP HLW + + SD RS RVP RP +VTW L S L + K +N E + + R D V PRGLK +V Q V+
Sbjct: 1 MVALNETYGGKQWYISTVQLQLASVEFCVACRSVSTLHLTVEEGTPRHLWADTWSDQSDXXXXXXXXXXXGRSVLVRVPPFRPREVTWNLPPSMLSEASKDAFKNLECMSFSDAVERSGDSFDGVALPRGLKSVVFGRWCYQHVD 145
BLAST of mRNA_S-dermatodea_contig12579.1588.1 vs. uniprot
Match: A0A6H5JA08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA08_9PHAE) HSP 1 Score: 89.7 bits (221), Expect = 1.100e-15 Identity = 60/147 (40.82%), Postives = 78/147 (53.06%), Query Frame = 1
Query: 1 GSSPCLEAFIVALNEACGRKGWYVSTMQLQLASLELCGACRSVTTLHLTITSGTPTHLWEEKESS-DFRKAKQVRSTRVPVLRPYKVTWKLRTSWLMQK-----HRLENRERLPSYEHRLPMIVDRVVWPRGLKGLVLNASFNQTVE 423
G S CL+A I+ALN+A G + WY STMQLQL SLELC ACRS+ L L + GTP LW ++ + R K+ TRVPV+R VTWKL L + P ++ LP + WP L + FN++VE
Sbjct: 39 GPSRCLDALIIALNQASGGE-WYTSTMQLQLTSLELCAACRSMHLLKLNVQHGTPPRLWRGTATTRETRSVKRRNVTRVPVVRARTVTWKLPGVALRNMTGDAWSEVTTFSLGPGFDDDLPRGIQ---WPEKLTLFGVGPGFNRSVE 181
BLAST of mRNA_S-dermatodea_contig12579.1588.1 vs. uniprot
Match: A0A6H5L1V9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1V9_9PHAE) HSP 1 Score: 88.2 bits (217), Expect = 3.460e-15 Identity = 54/136 (39.71%), Postives = 79/136 (58.09%), Query Frame = 1
Query: 13 CLEAFIVALNEAC--GRKGWYVSTMQLQLASLELCGACRSVTTLHLTITSGTPTHLWEEKESSDFRKAKQVRSTRVPVLRPYKVTWKLRTSWLMQKHRLENRERLPSYEHRLPMI---VDRVVWPRGLKGLVLNAS 405
CL+AF+VAL++ G K WY ST+QLQLASLE CGACRS LH+ + + TP LW +++ STRVP ++ +TW T + E RL S + ++ + +D VVWP+GL+ LV++ +
Sbjct: 9 CLDAFVVALSQCYEGGEKRWYTSTLQLQLASLEFCGACRSTPMLHVYVDAETPPTLWSLGQANPTAGT----STRVPAVQAVGLTWARPTESPLGSASSELWTRLESLQLQVSLCTANLDSVVWPQGLQRLVMDCT 140
BLAST of mRNA_S-dermatodea_contig12579.1588.1 vs. uniprot
Match: A0A6H5KMU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMU8_9PHAE) HSP 1 Score: 84.7 bits (208), Expect = 2.020e-14 Identity = 56/131 (42.75%), Postives = 72/131 (54.96%), Query Frame = 1
Query: 19 EAFIVALNEACGRKGWYVSTMQLQLASLELCGACRSVTTLHLTITSGTPTHLWEEKESSDFR-KAKQVRSTRVPVLRPYKVTWKLRTSWLMQKHRLENRERLP------SYEHRLPMIVDRVVWPRGLKGL 390
+A +ALN+ G GWY S +QLQLASL+LC ACR V T HLT+ LW + R + + +RVP LRP KVTW L T L +H + E + S+++R VDRV WP GLK L
Sbjct: 17 DALDIALNQVSGVNGWYTSKLQLQLASLQLCLACRRVPTSHLTVERDVLALLWPHSAAEATRSRLVSLGQSRVPALRPRKVTWNLAT--LSMRHCGDAFESVDVLVFGDSFDYR----VDRVTWPPGLKKL 141 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12579.1588.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 22
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig12579.1588.1 >prot_S-dermatodea_contig12579.1588.1 ID=prot_S-dermatodea_contig12579.1588.1|Name=mRNA_S-dermatodea_contig12579.1588.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=460bp GSSPCLEAFIVALNEACGRKGWYVSTMQLQLASLELCGACRSVTTLHLTIback to top mRNA from alignment at S-dermatodea_contig12579:1864..3243+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig12579.1588.1 ID=mRNA_S-dermatodea_contig12579.1588.1|Name=mRNA_S-dermatodea_contig12579.1588.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1380bp|location=Sequence derived from alignment at S-dermatodea_contig12579:1864..3243+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig12579:1864..3243+ >mRNA_S-dermatodea_contig12579.1588.1 ID=mRNA_S-dermatodea_contig12579.1588.1|Name=mRNA_S-dermatodea_contig12579.1588.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2760bp|location=Sequence derived from alignment at S-dermatodea_contig12579:1864..3243+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |