mRNA_S-dermatodea_contig12578.1587.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12578.1587.1
Unique NamemRNA_S-dermatodea_contig12578.1587.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12578.1587.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12578contigS-dermatodea_contig12578:2022..5964 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-04_002160.2
Hectar predicted targeting categoryother localisation
Exons4
Model size593
Cds size591
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12578.1587.1prot_S-dermatodea_contig12578.1587.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12578 2022..5964 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924253.357862-CDS-S-dermatodea_contig12578:2021..22611622924253.357862-CDS-S-dermatodea_contig12578:2021..2261Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12578 2022..2261 -
1694079127.237023-CDS-S-dermatodea_contig12578:2021..22611694079127.237023-CDS-S-dermatodea_contig12578:2021..2261Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12578 2022..2261 -
1622924253.3720138-CDS-S-dermatodea_contig12578:4723..48071622924253.3720138-CDS-S-dermatodea_contig12578:4723..4807Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12578 4724..4807 -
1694079127.2458868-CDS-S-dermatodea_contig12578:4723..48071694079127.2458868-CDS-S-dermatodea_contig12578:4723..4807Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12578 4724..4807 -
1622924253.3832068-CDS-S-dermatodea_contig12578:5359..55911622924253.3832068-CDS-S-dermatodea_contig12578:5359..5591Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12578 5360..5591 -
1694079127.2538452-CDS-S-dermatodea_contig12578:5359..55911694079127.2538452-CDS-S-dermatodea_contig12578:5359..5591Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12578 5360..5591 -
1622924253.3947687-CDS-S-dermatodea_contig12578:5929..59641622924253.3947687-CDS-S-dermatodea_contig12578:5929..5964Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12578 5930..5964 -
1694079127.2691758-CDS-S-dermatodea_contig12578:5929..59641694079127.2691758-CDS-S-dermatodea_contig12578:5929..5964Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12578 5930..5964 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12578.1587.1

>prot_S-dermatodea_contig12578.1587.1 ID=prot_S-dermatodea_contig12578.1587.1|Name=mRNA_S-dermatodea_contig12578.1587.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=197bp
RRFQLSPQQSYRKQQQEQQQEQQQQQLHPFVGSGRLRHQPAASETKGPAR
FSTIMATPRQAAAAALAKARARQSGQDAGDGDGSGSGKKEKAKVDWDDVA
AKARREAMWLLEFRKQQAAHAEAFSFQKPAKKRRRKASSKGQTPDAPAAT
MDPAPTDASEKTVADNHATLPVRAESAPLSVGPAGAVAGPAETTAAR
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mRNA from alignment at S-dermatodea_contig12578:2022..5964-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12578.1587.1 ID=mRNA_S-dermatodea_contig12578.1587.1|Name=mRNA_S-dermatodea_contig12578.1587.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3943bp|location=Sequence derived from alignment at S-dermatodea_contig12578:2022..5964- (Saccorhiza dermatodea SderLu1190fm monoicous)
CGGCGCTTCCAGCTCTCTCCACAGCAATCCTACCGGTCAGTGCGCTCGGT
TTCCACGCAGCAGAATCACGAATGCGCGTTGTGGCTTGTTTATATTTCGT
GCGACGCAGACGTAGCACGCGCGAACGAGCGCGGAGTAAAACTTGATATG
TCGAGCGTTTCCCTCCCTCTGCCCCCCCATTTTGTTTTTCTTCATACTCT
GTATACTGCTGTATATTGTATGTATGATAGTGTAATGAAATCATATGATA
TGATATGACAGGGTCAACCATTTCTGTCCTCTGGAAAGGCACACCTATCA
CCTATGCTGCTCGCTGCGCACGCATTCATCGACCTCCAATTTTTCATCAA
TATACTACCATCACAATCGCCAGGAAACAGCAGCAGGAGCAGCAGCAGGA
GCAGCAGCAGCAGCAGCTACATCCGTTCGTCGGGTCGGGGCGATTGCGCC
ATCAGCCAGCCGCGTCAGAAACAAAAGGCCCGGCTCGGTTTTCCACCATC
ATGGCCACGCCTAGGCAGGCGGCCGCAGCTGCTTTGGCGAAAGCGAGGGC
AAGGCAATCGGGGCAAGACGCTGGCGATGGCGATGGCTCCGGGAGCGGGA
AAAAGGCAAGCCTAGCAGGAGTCCACCGTGTAGAGGGGCTCCGAATTGCT
GGTCGTGGCCTGCCGTGGGCGCGCTCGTGTTGGTGTCGGGGTTCACTTTT
GCGAGAGGAGCTTGCTTGCGGGAACTAGCCTCTCAGATCGATCGCGATTA
TCGCGATGCTTGTTCTGAATAATAATGGCATGATCAATTGCATTTTGGGC
ACGAACTCGGACGCTTGCAAGCAGTGGCAGTGAGTGAGTTGAGCAGCTCT
CCTCGGGGGCCTTCTTCCACCATTGCCTCGGCGTGGCTTTGGTTAATGCC
TCGTGGGAATCTTCATAAGCGCGGAGATTGCCAGGCTTGGTTAATGGGCT
GGCTCGCGCTAAGCAAGCTGGCTCTTCATTAGCCTTCTGTCGCTTTTTCG
TCTGCATCTATCTTCCCAAACACACTCTGAACTCCCCCTCGCCCGCTAGA
CCAAGGGGAGGCCACGATGGTGTTTACTTATAATTAGACAACTGAACTTG
CAAATTTTCTTCTATTCGTACGTTTTTATTACTGTAATGCGCTCCTCATG
TCCCCAGGAGAAGGCAAAGGTTGACTGGGACGACGTTGCCGCGAAAGCCA
GGCGGGAGGCGATGTGGCTGCTCGAGTTCAGGAAGCAGCAGGTATGCGCA
AGGCTATCATACTCCATTAGTTACAATGTACACTACACACTACAGTGTAC
TGCTTTGTAGTGCCATCCTTCGGCCAAAATCTCTGAATGTATGTATCCTA
TAGAGCTCTATGGCAGGAACACTTGCACCTTGCACCGCATTTAAAAAAAA
TCCCGATGTCAACCGGCAACACCACCTGTACATTTATAGTCCCCCCCAGC
GCATATGCCTTAGTGAGAGAGTAAAGGACGTACCTCATACCTACTTTCAG
TTTCCCCTGAACCAGTGTGCTTGTGAGTTAGGGATGTGCATGGGAACTAG
ATTTTGTTTTTATGAATACATATGCGTACGTTTTACTTGACTCATATTGT
AAGTACTTGTATGAGGACAACTGAACTGCAGTACGAGTATCTCGTGTAGA
ACCCGTTAGTTATACTGGCGAAACGGAGGCGTGTTTGTTCCTACAACGCG
AGCGCCTCATCGCGCTCACGCGGCCGCGTGAAGTGGCGATGATGTTCGCA
TCACGCCCCAGCTGCCCACAGCCCTGCTTGCTTCTCGTGCGTACCAGTAG
GCATGCTAATATAACATACATGCCGGCGAAACCTCGCTACGCTCCCGAAC
TGCGTCACCGCGTATACAAGTAGTCATTGTACAAGTGTACAGCAGTAAGT
AGCCGTTGCGTTTTTTTTCGAATTTGACGTGTAGAAACTATTAATAGTAC
AAGTATGATACTTCTGCTGTGCAAGTCGAGCGACGGTCCCTGATCCTCGA
CCTCCACCAACACTACACACTACACTGCTGTGCTGCTGTACACCCCAGCC
ATGCACGACATCAGATACCCCCGGAAAGCCTGCTTCGCCCAGGAGAGGTC
GTGCAAAGCAGCCCCCCTTGTTAACCCTTTTGGGACTTAAGGCTGTACAG
TATTCGGGTAACTGTTTGCTATTATTTTTTACCCTTTTGCGACGAAGCCT
GGGAGACGAAGCCTGTTTTCGGGTAACTGTTGGCTACCATAATAGCAAAA
GTTAAAGTTACCCCAAAACAGCCTTAGTCCCAAAACAAAAGGGTATATAA
TAATAGCAAACAGTTACCCGATAACAGCCTTAGTCCCAAAAGGGTGAAAG
CACCGATCACGATTCGAACGATTCTCTGCACGGCGGTGTATCGAGGAGTC
CATATCAGATAAGCGTATTGCATATAGAGCTCGATGTGGAGCTTTCGTCT
ATACTGTAGCATAGAGCTCTTACTGCTGTTGTGTAGAGAGCAACAGAGCA
ACGGCATTTGTTCGCAGGTTGCACCTTGCAGTTAGAGCGCTTTTGTCAGA
TACCACACCTGTACACAAACCATTTATATACTTCCTGGTGCGGAGAGCGC
GAGGCTATTCTTGTACACATGCCGTCAGTGTTGTACTATCTCTCTTAACC
CTTTTGGGACTATAGGTGTTTTCGGGTAATAACTGTTTGCTATTATTATT
TACCCTTTTGGGACTAAGCCTGGGGACGGAAGCCTGTTTTCGGGTAACTG
TTGGCTACCATAATAGCAAACAGTTACCCGAAAACAGCTTTAGTCCCAAA
ACAAAGGGTATATAATAATAACAAATAGTTACCCGATAACAGCCTTAGTA
CCAAAAAGGTTAATGAAAGTGTCTGTAAATAGCCCTTTTGAACTTAAAAA
AAAAAGTTCTGGTATTAATATCACAGCGTTTTTTGAGTTGGCGCTTATTG
CCAAATCAACCAGAGGGCTCGTAACGTGTGCAGAGTTTTCTCTTGAAGCT
TTTCGGACATTTCATATTTCACCGGTTTCGCCCGTTCGCCCACAATCACG
CGACACCACACCGCGCGCCCCTCTCGCTCGCCCGCGCCCCCAGCTCCAAC
GCACACCTCACGGGTGTAGCCATAGCAGTGGCTACCCACTATAATAGCGA
CTTGATAAACCAGCTGTGTCATACAGTAGCGTAGGACGCAATAATATGTT
GAAGTCCGAGAGAGAGCATGGGCACACTGAACGTAAATGTCCGGTGCGCC
ACAGAAATCGAAGGCATGGGATGGGGGGATATACAAGTATGCGACATGGG
ACGATGTATCCATCCCGTTGTGGCCGAAGACGGGATCCAGATGAGGGACC
TGGCCCGTCGGTCGCAAGTGGGATAGCATTGGTGCACACGAAGTATATGT
TCACACGATGCAAGTACAATATATGTATCCCATGCGTAGAGCTCCTCTGT
TAGCGTAATAGCTCCTACGTGTGTGCTATACCGGAATATCCTCTCCAGTT
TTTTTTTTCCACGGGGGATATTACGTACACGCCCCCCCCCCCTCCCCGCC
TCCCACGCACCGGTAGCAAGCAGCCCACGACGGCAAGCGCACCACCATTA
CGGCTTCCCACGGCGAATAACACTCGATGCTTGTATGATTGACTTGGACC
CCCCCCCGTCCTCCCCGTCCCCCGCCCCCCACCCCGCGCCCCGGCTCTGT
CAGGCTGCGCACGCGGAGGCGTTTTCCTTCCAAAAACCCGCGAAGAAGCG
GCGCAGGAAGGCCTCTTCTAAGGGACAAACCCCCGACGCGCCCGCCGCAA
CAATGGACCCCGCCCCCACGGATGCGAGTGAGAAAACTGTCGCGGACAAC
CATGCTACGCTGCCGGTGCGGGCTGAATCGGCACCTCTGTCGGTAGGCCC
TGCGGGGGCGGTTGCCGGGCCTGCCGAAACTACAGCCGCGAGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig12578:2022..5964-

>mRNA_S-dermatodea_contig12578.1587.1 ID=mRNA_S-dermatodea_contig12578.1587.1|Name=mRNA_S-dermatodea_contig12578.1587.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1182bp|location=Sequence derived from alignment at S-dermatodea_contig12578:2022..5964- (Saccorhiza dermatodea SderLu1190fm monoicous)
CGGCGCTTCCAGCTCTCTCCACAGCAATCCTACCGCGGCGCTTCCAGCTC
TCTCCACAGCAATCCTACCGGAAACAGCAGCAGGAGCAGCAGCAGGAGCA
GCAGCAGCAGCAGCTACATCCGTTCGTCGGGTCGGGGCGATTGCGCCATC
AGCCAGCCGCGTCAGAAACAAAAGGCCCGGCTCGGTTTTCCACCATCATG
GCCACGCCTAGGCAGGCGGCCGCAGCTGCTTTGGCGAAAGCGAGGGCAAG
GCAATCGGGGCAAGACGCTGGCGATGGCGATGGCTCCGGGAGCGGGAAAA
AGGAAACAGCAGCAGGAGCAGCAGCAGGAGCAGCAGCAGCAGCAGCTACA
TCCGTTCGTCGGGTCGGGGCGATTGCGCCATCAGCCAGCCGCGTCAGAAA
CAAAAGGCCCGGCTCGGTTTTCCACCATCATGGCCACGCCTAGGCAGGCG
GCCGCAGCTGCTTTGGCGAAAGCGAGGGCAAGGCAATCGGGGCAAGACGC
TGGCGATGGCGATGGCTCCGGGAGCGGGAAAAAGGAGAAGGCAAAGGTTG
ACTGGGACGACGTTGCCGCGAAAGCCAGGCGGGAGGCGATGTGGCTGCTC
GAGTTCAGGAAGCAGCAGGAGAAGGCAAAGGTTGACTGGGACGACGTTGC
CGCGAAAGCCAGGCGGGAGGCGATGTGGCTGCTCGAGTTCAGGAAGCAGC
AGGCTGCGCACGCGGAGGCGTTTTCCTTCCAAAAACCCGCGAAGAAGCGG
CGCAGGAAGGCCTCTTCTAAGGGACAAACCCCCGACGCGCCCGCCGCAAC
AATGGACCCCGCCCCCACGGATGCGAGTGAGAAAACTGTCGCGGACAACC
ATGCTACGCTGCCGGTGCGGGCTGAATCGGCACCTCTGTCGGTAGGCCCT
GCGGGGGCGGTTGCCGGGCCTGCCGAAACTACAGCCGCGAGGGCTGCGCA
CGCGGAGGCGTTTTCCTTCCAAAAACCCGCGAAGAAGCGGCGCAGGAAGG
CCTCTTCTAAGGGACAAACCCCCGACGCGCCCGCCGCAACAATGGACCCC
GCCCCCACGGATGCGAGTGAGAAAACTGTCGCGGACAACCATGCTACGCT
GCCGGTGCGGGCTGAATCGGCACCTCTGTCGGTAGGCCCTGCGGGGGCGG
TTGCCGGGCCTGCCGAAACTACAGCCGCGAGG
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