mRNA_S-dermatodea_contig12573.1586.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12573.1586.1
Unique NamemRNA_S-dermatodea_contig12573.1586.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12573.1586.1 vs. uniprot
Match: D7G3S0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3S0_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 3.590e-17
Identity = 39/79 (49.37%), Postives = 55/79 (69.62%), Query Frame = 1 
Query:   52 PKSDHDSGTVASMAPGECGKTY---VPIKIKEKVVRDALAHRIRGEIEWGTPAGSIDVFTKNEVIEVKHYKQWKTGIGQ 279
            P +D    + ++ +    G +Y      K+ E+ VRDALA + RG+ EWGTPAGSIDVFT++EVIE+KH+K WK+G+GQ
Sbjct:  633 PAADSGESSKSAASASRRGMSYNKNASNKVSERDVRDALARQTRGQTEWGTPAGSIDVFTRDEVIEIKHFKNWKSGVGQ 711
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BLAST of mRNA_S-dermatodea_contig12573.1586.1 vs. uniprot
Match: A0A6H5JJP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJP2_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 3.550e-10
Identity = 32/66 (48.48%), Postives = 45/66 (68.18%), Query Frame = 1 
Query:   82 ASMAPGECGKTYVPIKIKEKVVRDALAHRIRGEIEWGTPAGSIDVFTKNEVIEVKHYKQWKTGIGQ 279
            A + P +  +  V  +++E VVRDALA  + G  E  TP+G IDV ++ EVIEVK+Y+QWK G+GQ
Sbjct:  266 ALLRPVKYKENCVTERVRECVVRDALASLVGGTTEVETPSGYIDVLSETEVIEVKYYRQWKDGLGQ 331
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BLAST of mRNA_S-dermatodea_contig12573.1586.1 vs. uniprot
Match: A0A6H5L5N7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5N7_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 5.540e-9
Identity = 28/51 (54.90%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:  127 KIKEKVVRDALAHRIRGEIEWGTPAGSIDVFTKNEVIEVKHYKQWKTGIGQ 279
            +++E VVRDALA  + G  E  TP+G IDV ++ EVIEVK+Y+ WK G+GQ
Sbjct:  715 RVRECVVRDALAFVVGGTTEVETPSGYIDVLSETEVIEVKYYRNWKEGLGQ 765
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BLAST of mRNA_S-dermatodea_contig12573.1586.1 vs. uniprot
Match: A0A2P1EKB3_9VIRU (KilA-N domain-containing protein n=3 Tax=Mimivirus TaxID=315393 RepID=A0A2P1EKB3_9VIRU)

HSP 1 Score: 56.6 bits (135), Expect = 7.150e-7
Identity = 23/49 (46.94%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:  133 KEKVVRDALAHRIRGEIEWGTPAGSIDVFTKNEVIEVKHYKQWKTGIGQ 279
            KEK++++ L   + G IE  T  G+ID+ TKN +IE+K+Y  WK G+GQ
Sbjct:  178 KEKIIQEELQKNLGGLIEVKTKVGAIDLLTKNTIIEIKNYDNWKHGLGQ 226
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BLAST of mRNA_S-dermatodea_contig12573.1586.1 vs. uniprot
Match: H2EG18_9VIRU (Putative KilA-N domain-containing protein n=1 Tax=Moumouvirus Monve TaxID=1128131 RepID=H2EG18_9VIRU)

HSP 1 Score: 53.9 bits (128), Expect = 1.610e-6
Identity = 21/49 (42.86%), Postives = 33/49 (67.35%), Query Frame = 1 
Query:  133 KEKVVRDALAHRIRGEIEWGTPAGSIDVFTKNEVIEVKHYKQWKTGIGQ 279
            KEK++++ L  ++ G +E  T  G ID+ TK+ +IE+K Y  WK G+GQ
Sbjct:   54 KEKIIQEKLLIKLGGSVEVKTKIGKIDLLTKDTIIEIKDYDDWKHGLGQ 102
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BLAST of mRNA_S-dermatodea_contig12573.1586.1 vs. uniprot
Match: K9VSH3_9CYAN (Uncharacterized protein n=2 Tax=Oscillatoriales TaxID=1150 RepID=K9VSH3_9CYAN)

HSP 1 Score: 54.7 bits (130), Expect = 3.080e-6
Identity = 27/48 (56.25%), Postives = 32/48 (66.67%), Query Frame = 1 
Query:  136 EKVVRDALAHRIRGEIEWGTPAGSIDVFTKNEVIEVKHYKQWKTGIGQ 279
            EK   + L   I GE E  TPAGSID+ T +++IEVKH K WKT IGQ
Sbjct:  155 EKWYVNQLQVEIGGETEVLTPAGSIDLLTTSQLIEVKHIKNWKTAIGQ 202
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BLAST of mRNA_S-dermatodea_contig12573.1586.1 vs. uniprot
Match: A0A2L2DP27_MIMIV (N domain-containing n=3 Tax=Mimivirus TaxID=315393 RepID=A0A2L2DP27_MIMIV)

HSP 1 Score: 51.2 bits (121), Expect = 7.150e-5
Identity = 23/49 (46.94%), Postives = 32/49 (65.31%), Query Frame = 1 
Query:  133 KEKVVRDALAHRIRGEIEWGTPAGSIDVFTKNEVIEVKHYKQWKTGIGQ 279
            KEK ++  L  ++ GEIE  T  G ID+ TKN++IE+K Y  WK  +GQ
Sbjct:  280 KEKKIKLDLQKKLGGEIEVLTEHGYIDLLTKNKIIEIKSYDNWKYALGQ 328
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12573.1586.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7G3S0_ECTSI3.590e-1749.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JJP2_9PHAE3.550e-1048.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5N7_9PHAE5.540e-954.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2P1EKB3_9VIRU7.150e-746.94KilA-N domain-containing protein n=3 Tax=Mimivirus... [more]
H2EG18_9VIRU1.610e-642.86Putative KilA-N domain-containing protein n=1 Tax=... [more]
K9VSH3_9CYAN3.080e-656.25Uncharacterized protein n=2 Tax=Oscillatoriales Ta... [more]
A0A2L2DP27_MIMIV7.150e-546.94N domain-containing n=3 Tax=Mimivirus TaxID=315393... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12573contigS-dermatodea_contig12573:386..1618 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size396
Cds size396
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924253.32116-CDS-S-dermatodea_contig12573:385..5021622924253.32116-CDS-S-dermatodea_contig12573:385..502Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12573 386..502 -
1694079127.209284-CDS-S-dermatodea_contig12573:385..5021694079127.209284-CDS-S-dermatodea_contig12573:385..502Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12573 386..502 -
1622924253.3300304-CDS-S-dermatodea_contig12573:1339..16181622924253.3300304-CDS-S-dermatodea_contig12573:1339..1618Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12573 1340..1618 -
1694079127.2228248-CDS-S-dermatodea_contig12573:1339..16181694079127.2228248-CDS-S-dermatodea_contig12573:1339..1618Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12573 1340..1618 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12573.1586.1prot_S-dermatodea_contig12573.1586.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12573 386..1618 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12573.1586.1

>prot_S-dermatodea_contig12573.1586.1 ID=prot_S-dermatodea_contig12573.1586.1|Name=mRNA_S-dermatodea_contig12573.1586.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=132bp
MTSNMASLATHVRGAPVPKSDHDSGTVASMAPGECGKTYVPIKIKEKVVR
DALAHRIRGEIEWGTPAGSIDVFTKNEVIEVKHYKQWKTGIGQRRRRPRC
CYGTSGTRDGLADAPNGPNHDPGVRSPSAAAS
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mRNA from alignment at S-dermatodea_contig12573:386..1618-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12573.1586.1 ID=mRNA_S-dermatodea_contig12573.1586.1|Name=mRNA_S-dermatodea_contig12573.1586.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1233bp|location=Sequence derived from alignment at S-dermatodea_contig12573:386..1618- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGACAAGCAACATGGCTTCTCTCGCAACCCATGTTCGTGGCGCACCCGT
GCCAAAAAGCGATCACGATTCGGGCACAGTGGCCTCGATGGCGCCGGGTG
AGTGCGGAAAAACATATGTGCCAATCAAAATAAAGGAGAAGGTTGTCAGA
GATGCACTTGCTCACCGCATCCGAGGCGAAATTGAATGGGGAACCCCCGC
GGGCTCCATTGACGTTTTCACGAAGAACGAGGTCATCGAGGTGAAGCACT
ACAAACAGTGGAAGACAGGGATCGGTCAGGTAATGGCGTACGGTGCACAC
TATCCTTCGCACACAAAACGTCTCCACCTTTTTGCTCACAGGGGAGAAAG
AGCATCAAAGCATGTTGAGATGGCCACAAAAGTGTGTTCGACACAAGATA
TCCGTGTTACATTTGAAGAGGTGTTTCCTGGCAGCAATGACCTGGTGGTA
GACGAGGCGTCCACACATGGAAAATCGAATGTGGACACGGGTGTGACGTA
CGGTGTTAGCAAGAAAGGGGGAATCCGCGTCAATAATCTTCAGTATCGCG
AGAGTGCGTTTGCCAGAATGAATCAGTTGATTTTGGAAGCAAGTAAAAAG
ACACTGAAATAGTTCGGCAAGGACAAAGAGCCACAGAGGGAGACGCTGGA
GTTTAGTCTTAAAAATAACCAGGAGACTATAGGAGTTGCTTTCCACGACA
AGGTTAAGAGTTTTTTGTACTCGATGAAACCTGGAGACAAGGAGTTTTTG
GACGTATTTTATACGAAATTGAAGGAGAATACATCGAGAACCAGGGGCGG
TAGCAAAGCAGAAGATTTCAGGAAGAAACGTAAGATTGAGTGGAGTTACC
ACGATTGGTCTTCCGGGGATGTTCGCGTTAGCGTACCACCGGAGAAGGAG
GGGAAGGGAATAAAGAAGAGGAAGTTGGATGAGGGAGGAGATGGAAATTC
GGGGAGCAAAAGGAATGTATAATGCAGACACGATGAAGCAGCGCTGCACG
AACACGAATCCTTTTCTGAATGGCTTAAAAACTTGGGAACATGTACGCCT
GGCATGTGTGCACCTATTTCTGTGAACAAATCAACCTTCACTGTCTGCCG
CGATCGGTGCGCGCAGAGGCGGCGGCGGCCACGGTGCTGCTACGGCACTA
GTGGCACGAGAGATGGCTTAGCCGACGCACCCAACGGGCCAAACCATGAC
CCTGGGGTACGCTCTCCCTCGGCAGCAGCCAGT
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Coding sequence (CDS) from alignment at S-dermatodea_contig12573:386..1618-

>mRNA_S-dermatodea_contig12573.1586.1 ID=mRNA_S-dermatodea_contig12573.1586.1|Name=mRNA_S-dermatodea_contig12573.1586.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=792bp|location=Sequence derived from alignment at S-dermatodea_contig12573:386..1618- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGACAAGCAACATGGCTTCTCTCGCAACCCATGTTCGTGGCGCACCCGT
GCCAAAAAGCGATCACGATTCGGGCACAGTGGCCTCGATGGCGCCGGGTG
AGTGCGGAAAAACATATGTGCCAATCAAAATAAAGGAGAAGGTTGTCAGA
GATGCACTTGCTCACCGCATCCGAGGCGAAATTGAATGGGGAACCCCCGC
GGGCTCCATTGACGTTTTCACGAAGAACGAGGTCATCGAGGTGAAGCACT
ACAAACAGTGGAAGACAGGGATCGGTCAGATGACAAGCAACATGGCTTCT
CTCGCAACCCATGTTCGTGGCGCACCCGTGCCAAAAAGCGATCACGATTC
GGGCACAGTGGCCTCGATGGCGCCGGGTGAGTGCGGAAAAACATATGTGC
CAATCAAAATAAAGGAGAAGGTTGTCAGAGATGCACTTGCTCACCGCATC
CGAGGCGAAATTGAATGGGGAACCCCCGCGGGCTCCATTGACGTTTTCAC
GAAGAACGAGGTCATCGAGGTGAAGCACTACAAACAGTGGAAGACAGGGA
TCGGTCAGAGGCGGCGGCGGCCACGGTGCTGCTACGGCACTAGTGGCACG
AGAGATGGCTTAGCCGACGCACCCAACGGGCCAAACCATGACCCTGGGGT
ACGCTCTCCCTCGGCAGCAGCCAGTAGGCGGCGGCGGCCACGGTGCTGCT
ACGGCACTAGTGGCACGAGAGATGGCTTAGCCGACGCACCCAACGGGCCA
AACCATGACCCTGGGGTACGCTCTCCCTCGGCAGCAGCCAGT
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