mRNA_S-dermatodea_contig1256.1581.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1256.1581.1
Unique NamemRNA_S-dermatodea_contig1256.1581.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig1256.1581.1 vs. uniprot
Match: D8LU54_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU54_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 3.990e-15
Identity = 39/50 (78.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:    1 MAMTKMAKGGGGVDVDRLLNFEQRSGIKDGEIETFITKVDAVNAAIQAMK 150
            MAM    K GGG DVDR+L+FE+RSGIK+GEIE+FITKVDAVNAAIQAMK
Sbjct:   81 MAMATAGKPGGGFDVDRVLDFEKRSGIKNGEIESFITKVDAVNAAIQAMK 130
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1256.1581.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LU54_ECTSI3.990e-1578.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1256contigS-dermatodea_contig1256:13323..13487 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.4
Seed ortholog evalue2.3e-12
Seed eggNOG ortholog2880.D8LU54
EggNOG OGs2DZZE@1,2S7FK@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size165
Cds size165
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924252.8552394-CDS-S-dermatodea_contig1256:13322..134871622924252.8552394-CDS-S-dermatodea_contig1256:13322..13487Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1256 13323..13487 +
1694079126.8904107-CDS-S-dermatodea_contig1256:13322..134871694079126.8904107-CDS-S-dermatodea_contig1256:13322..13487Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1256 13323..13487 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1256.1581.1prot_S-dermatodea_contig1256.1581.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1256 13323..13487 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1256.1581.1

>prot_S-dermatodea_contig1256.1581.1 ID=prot_S-dermatodea_contig1256.1581.1|Name=mRNA_S-dermatodea_contig1256.1581.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=55bp
MAMTKMAKGGGGVDVDRLLNFEQRSGIKDGEIETFITKVDAVNAAIQAMK
ARCE*
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mRNA from alignment at S-dermatodea_contig1256:13323..13487+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1256.1581.1 ID=mRNA_S-dermatodea_contig1256.1581.1|Name=mRNA_S-dermatodea_contig1256.1581.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=165bp|location=Sequence derived from alignment at S-dermatodea_contig1256:13323..13487+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCCATGACAAAAATGGCAAAGGGTGGAGGAGGTGTCGATGTGGATCG
CTTGCTGAACTTCGAACAGCGCAGCGGCATCAAGGACGGGGAGATCGAGA
CGTTCATCACTAAAGTCGATGCAGTCAACGCCGCTATCCAGGCCATGAAG
GCAAGATGCGAGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig1256:13323..13487+

>mRNA_S-dermatodea_contig1256.1581.1 ID=mRNA_S-dermatodea_contig1256.1581.1|Name=mRNA_S-dermatodea_contig1256.1581.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=330bp|location=Sequence derived from alignment at S-dermatodea_contig1256:13323..13487+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCCATGACAAAAATGGCAAAGGGTGGAGGAGGTGTCGATGTGGATCG
CTTGCTGAACTTCGAACAGCGCAGCGGCATCAAGGACGGGGAGATCGAGA
CGTTCATCACTAAAGTCGATGCAGTCAACGCCGCTATCCAGGCCATGAAG
GCAAGATGCGAGTGAATGGCCATGACAAAAATGGCAAAGGGTGGAGGAGG
TGTCGATGTGGATCGCTTGCTGAACTTCGAACAGCGCAGCGGCATCAAGG
ACGGGGAGATCGAGACGTTCATCACTAAAGTCGATGCAGTCAACGCCGCT
ATCCAGGCCATGAAGGCAAGATGCGAGTGA
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