mRNA_S-dermatodea_contig12558.1578.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12558.1578.1
Unique NamemRNA_S-dermatodea_contig12558.1578.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12558.1578.1 vs. uniprot
Match: D8LFM0_ECTSI (Peptidyl prolyl cis/trans isomerase like n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFM0_ECTSI)

HSP 1 Score: 457 bits (1175), Expect = 2.810e-151
Identity = 244/327 (74.62%), Postives = 267/327 (81.65%), Query Frame = 1 
Query:   67 MRVSCSFSRQQAAVALIVGRRFASAFVGAPRCGILTSAASSSSSTSVAMDAQSQGNRLG-DRRWLHALPGHQERSLARFPSPSLPVVAAAYAKRRPCSGHPLMMSSMTGAVSGEEICRAAHVLCADEASAEAALTRIKGGEQFGDVAADMSSCPSKDKGGDLGWFKKGQMVAEFEAACFENDPGTIVKVQTQFGWHVVALLSRAILPRQMSVDELGEIVELVRSKAGGAEEKYQFVDVREEEELTKAKLSGFINLPLSKFEEWGEKLSGDDAILDPEKDTVVLCHHGMRSNQMAQHLSTKAGFKKVWNVEGGLDAYAKQVDPSVAVY 1044
            MR SCS SRQQAAVALIVGRRFASAFV APR G+L        ST++ M AQS  +  G +RRW+HA+P       A   S  LP       + RPC+G PLMMSS T AV+GEEICRAAHVLCADE +AEAALTRIK GEQFGDVA DMSSCPSKDKGGDLGWFKKGQMVAEFEAACFENDPGTIVKVQTQFGWHVVALLSRAILPRQM+V+ELGEI+EL +S AG  + KYQFVDVREEEEL KAKL GF+NLPLSKFEEW +KLSG+ AILD EKDTV++CHHGMRSNQMAQHL+TKAGFK+VWNVEGGL AYA  VD SV VY
Sbjct:    1 MRFSCSLSRQQAAVALIVGRRFASAFVAAPRGGVLAG------STALPMRAQSCNSLAGSNRRWIHAVP-------AAGTSLGLPQ------QPRPCTGRPLMMSSATDAVTGEEICRAAHVLCADEDAAEAALTRIKSGEQFGDVATDMSSCPSKDKGGDLGWFKKGQMVAEFEAACFENDPGTIVKVQTQFGWHVVALLSRAILPRQMAVEELGEILELAKSGAGDVDSKYQFVDVREEEELGKAKLDGFVNLPLSKFEEWSDKLSGEGAILDAEKDTVIMCHHGMRSNQMAQHLATKAGFKRVWNVEGGLHAYASHVDSSVGVY 308
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BLAST of mRNA_S-dermatodea_contig12558.1578.1 vs. uniprot
Match: M2Y4U7_GALSU (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y4U7_GALSU)

HSP 1 Score: 195 bits (496), Expect = 1.390e-53
Identity = 96/212 (45.28%), Postives = 143/212 (67.45%), Query Frame = 1 
Query:  409 ICRAAHVLCADEASAEAALTRIKGGEQFGDVAADMSSCPSKDKGGDLGWFKKGQMVAEFEAACFENDPGTIVKVQTQFGWHVVALLSRAILPRQMSVDELGEIVELVRSKAGGAEEKYQFVDVREEEELTKAKLSGFINLPLSKFEEWGEKLSGDDAILDPEKDTVVLCHHGMRSNQMAQHLSTKAGFKKVWNVEGGLDAYAKQVDPSVAVY 1044
            I RA H+L   E  A+  L ++K G+ F ++A  +S CPSK++GG+LGWF++G MVA FE ACF+  P  ++K+QT++GWHV+ +  +AI P  ++V++  +I     S         Q VDVRE+ EL  A+L  F +LPL ++E+W E++   + +LD EK+T+V+CHHG+RS QM  +L+ + GF KV N+ GG+DAYA QVDPS+ VY
Sbjct:   12 IVRARHILVETEGMADTLLEQLKNGQHFAELAKAVSRCPSKERGGELGWFRRGTMVASFEDACFQGKPDQLIKIQTEYGWHVIQVQGQAIEPGSITVEDFAKIYPHQISHV-------QLVDVREQNELELARLDHFFHLPLGEYEKWAEQVESGE-LLDKEKETIVMCHHGIRSAQMCSYLAQQ-GFLKVRNLIGGIDAYAHQVDPSIGVY 214
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BLAST of mRNA_S-dermatodea_contig12558.1578.1 vs. uniprot
Match: A0A4D9D039_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D039_9STRA)

HSP 1 Score: 184 bits (468), Expect = 1.280e-49
Identity = 99/215 (46.05%), Postives = 139/215 (64.65%), Query Frame = 1 
Query:  415 RAAHVLCADEASAEAALTRIKGGEQFGDVAADMSSCPSKDKGGDLGWFKKGQMVAEFEAACFENDPGTIVKVQTQFGWHVVALLSRAILPRQMSVDELGEIVELVRSKAGGAE--EKYQFVDVREEEELTKAKL--SGFINLPLSKFEEWGEK-LSGDDAILDPEKDTVVLCHHGMRSNQMAQHLSTKAGFKKVWNVEGGLDAYAKQVDPSVAVY 1044
            RAAH+L   E  A+A +  ++ G  F ++A   S CPS+ +GGDLGWF  GQMV  FE  CF N  G + KVQT+FG+H++ +  +A  P      +LG++V      AGG E  E+ Q +DVRE +EL +A++  +GF+NLPLS+F EW  K LSG+  +LD +K TVVLCHHG RS Q A  L+++AGF +V+N+ GG+  YA+ VD  +  Y
Sbjct:   16 RAAHILVKSEEEADALMAVLENGADFAELAMVESDCPSRKQGGDLGWFGPGQMVPAFEEVCFNNPVGALAKVQTEFGYHIIQVNGKATAPGDWHPSQLGDLV------AGGQEGREEVQLIDVREPDELLRAEIKGAGFLNLPLSQFAEWRPKILSGE--LLDKDKKTVVLCHHGGRSMQFASFLTSQAGFTEVYNLSGGIHMYAQLVDSRIPTY 222
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BLAST of mRNA_S-dermatodea_contig12558.1578.1 vs. uniprot
Match: I2CR14_NANGC (Peptidyl prolyl cis trans isomerase like protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CR14_NANGC)

HSP 1 Score: 184 bits (466), Expect = 3.260e-48
Identity = 99/215 (46.05%), Postives = 138/215 (64.19%), Query Frame = 1 
Query:  415 RAAHVLCADEASAEAALTRIKGGEQFGDVAADMSSCPSKDKGGDLGWFKKGQMVAEFEAACFENDPGTIVKVQTQFGWHVVALLSRAILPRQMSVDELGEIVELVRSKAGGAE--EKYQFVDVREEEELTKAKL--SGFINLPLSKFEEWGEK-LSGDDAILDPEKDTVVLCHHGMRSNQMAQHLSTKAGFKKVWNVEGGLDAYAKQVDPSVAVY 1044
            RAAH+L   E  A+A +  ++ G  F ++A   S CPS+ +GGDLGWF  GQMV  FE  CF N  G + KVQT+FG+H++ +  +A  P      +LG++V      AGG E  E+ Q +DVRE +EL +A++  +GF+NLPLS+F EW  K LSG+  +LD  K TVVLCHHG RS Q A  L+++AGF +V+N+ GG+  YA+ VD  +  Y
Sbjct:  105 RAAHILVKSEEEADALMAVLENGADFAELAMVESDCPSRKQGGDLGWFGPGQMVPAFEEVCFNNPVGALAKVQTEFGYHIIQVNGKATAPGDWHPSQLGDLV------AGGQEGREEVQLIDVREPDELLRAEIKGAGFLNLPLSQFAEWRPKILSGE--LLDKNKKTVVLCHHGGRSMQFASFLTSQAGFTEVYNLSGGIHMYAQLVDSRIPTY 311
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BLAST of mRNA_S-dermatodea_contig12558.1578.1 vs. uniprot
Match: A0A7S2JMB7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Cyanoptyche gloeocystis TaxID=77922 RepID=A0A7S2JMB7_9EUKA)

HSP 1 Score: 176 bits (447), Expect = 7.580e-46
Identity = 97/207 (46.86%), Postives = 136/207 (65.70%), Query Frame = 1 
Query:  415 RAAHVLCADEASAEAALTRIKGGEQFGDVAADMSSCPSKDKGGDLGWFKKGQMVAEFEAACFE-NDPGTIVKVQTQFGWHVVALLSRAILPRQMSVDELGEIVELVRSKAGGAEEKYQFVDVREEEELTKAKLSGFINLPLSKFEEWGEKLSGDDAILDPEKDTVVLCHHGMRSNQMAQHLSTKAGFKKVWNVEGGLDAYAKQVDPS 1032
            RA+H+L + E  A+  L R+  GE F  +A + SSCPS  KGGDLGWFK+G MV EFE A FE ++   +VKV+TQFGWH++ +  +      +S +E  +I++    + G   ++ Q VDVREE+EL  A L GFINLPL++ E+W  ++ G   +LD  K+T+V+CHHGMRS QM   L  + GF KV N+ GG++AY+  VDPS
Sbjct:   96 RASHILVSGEEQADEILARLNKGEDFAKLARENSSCPSGMKGGDLGWFKRGMMVPEFEQASFEASNLNKVVKVKTQFGWHLLTVTGQRAGIGAVSAEEFKKILD----ERG---DQVQLVDVREEDELRLASLPGFINLPLTQAEKWAPEVEGG-VLLDKSKETIVMCHHGMRSAQMCGFLE-RVGFDKVKNLTGGINAYSNNVDPS 293
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BLAST of mRNA_S-dermatodea_contig12558.1578.1 vs. uniprot
Match: A0A8J5X8B1_DIALT (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X8B1_DIALT)

HSP 1 Score: 174 bits (442), Expect = 1.950e-45
Identity = 88/212 (41.51%), Postives = 140/212 (66.04%), Query Frame = 1 
Query:  415 RAAHVLCADEASAEAALTRIKGGEQFGDVAADMSSCPSKDKGGDLGWFKKGQMVAEFEAACFENDPGTIVKVQTQFGWHVVALLSRAILPRQMSVDELGEIVELVRSKAGGAEEKYQFVDVREEEELTKAKLSG--FINLPLSKFEEWGEKLSGDDAILDPEKDTVVLCHHGMRSNQMAQHLSTKAGFKKVWNVEGGLDAYAKQVDPSVAVY 1044
            RAAH+L   E  A+A   +++GG  FGD+A  +S C S+ +GG+LGWF  G M  +FE ACF+  PG++VKVQ++FGWH++ +      P  +S  EL   ++   +   G     QFVDVR  +E+++A + G  ++NLP +++ EWG+K++  + +L+ EK+T+V+CHHGMRS++ AQ +  + GF+ V ++ GG+DAYA + DP+V  Y
Sbjct:   55 RAAHILVDTEELADAIRAQVEGGMSFGDIAKTVSLCTSRSRGGNLGWFSAGMMTPDFERACFDATPGSLVKVQSEFGWHLIHVEETRAAPTDVSPAELKRRIDA--NDVHGV----QFVDVRSADEVSRASIPGVQWVNLPFNEYSEWGDKVAAGE-LLEHEKETIVICHHGMRSSRTAQFM-LQNGFRSVVSLLGGIDAYAAEADPAVGRY 258
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BLAST of mRNA_S-dermatodea_contig12558.1578.1 vs. uniprot
Match: A0A2V3IYG3_9FLOR (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IYG3_9FLOR)

HSP 1 Score: 168 bits (425), Expect = 6.360e-44
Identity = 86/213 (40.38%), Postives = 131/213 (61.50%), Query Frame = 1 
Query:  415 RAAHVLCADEASAEAALTRIKGGE-QFGDVAADMSSCPSKDKGGDLGWFKKGQMVAEFEAACFENDPGTIVKVQTQFGWHVVALLSRAILPRQMSVDELGEIVELVRSKAGGAEE--KYQFVDVREEEELTKAKLSGFINLPLSKFEEWGEKLSGDDAILDPEKDTVVLCHHGMRSNQMAQHLSTKAGFKKVWNVEGGLDAYAKQVDPSVAVY 1044
            RA H+L   E   +A   +++ G+  F D+A  +S+CPSKD+GGDLGWFK+  MV EFE A F N PG++VKV+++FGWH++ +    +  + ++VDELG      R    G ++    Q +D RE  EL  + L  F+NLP+ ++  W ++       L+ +K+T+V+CHHG+RS      L+ + GF  V N+ GG+DAYAK++D SV  Y
Sbjct:    3 RAKHILVDSEEMIDAIKQQLEDGKGNFADLAKLVSTCPSKDRGGDLGWFKRNIMVKEFEEAAFSNPPGSVVKVKSEFGWHLIQVEEHGMAAKSITVDELGR-----RFGKDGTDDPLSVQLIDCRETSELELSSLPNFLNLPMGEYARWADQFENGKLSLEKDKETIVMCHHGIRSANFCSFLA-QHGFTNVRNLIGGIDAYAKKIDNSVPQY 209
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BLAST of mRNA_S-dermatodea_contig12558.1578.1 vs. uniprot
Match: R7QD57_CHOCR (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QD57_CHOCR)

HSP 1 Score: 169 bits (429), Expect = 9.760e-44
Identity = 94/237 (39.66%), Postives = 141/237 (59.49%), Query Frame = 1 
Query:  343 RRPCSGHPLMMSS--MTGAVSGEEICRAAHVLCADEASAEAALTRIKGGE-QFGDVAADMSSCPSKDKGGDLGWFKKGQMVAEFEAACFENDPGTIVKVQTQFGWHVVALLSRAILPRQMSVDELGEIVELVRSKAGGAEEKYQFVDVREEEELTKAKLSGFINLPLSKFEEWGEKLSGDDAILDPEKDTVVLCHHGMRSNQMAQHLSTKAGFKKVWNVEGGLDAYAKQVDPSVAVY 1044
            RR  S  P MMS    T  +    + RA H+L   E   +A   +I  G+  F ++A  +S+C SK +GGDLGWF++  MV EFE A FEN PG+I+KV+++FGWH++ +    +  R +++ E  E      +   G+ +  Q +D RE  EL  A L GF++LP+ ++ +W +K    +  LD  K+T+V+CHHG+RS      LS + GF KV N+ GG+DAYA+++DPSV  Y
Sbjct:   31 RRSRSLSPRMMSGPPRTEDMKQPTMVRARHILVETEDMLDAVKKQIDDGKGSFAELAGLVSTCTSKGRGGDLGWFRRNTMVKEFETAAFENPPGSILKVKSEFGWHLIRVEEHGLAERPITIVEYDERFGEKATGNTGSTDDVQRIDCREANELEIASLKGFMHLPMGEYGKWADKFEKGELHLDKNKETIVMCHHGIRSANFCFFLSQQ-GFTKVRNLIGGIDAYARKIDPSVPTY 266
[Close]
BLAST of mRNA_S-dermatodea_contig12558.1578.1 vs. uniprot
Match: S8D8K8_9LAMI (Peptidyl-prolyl cis-trans isomerase (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8D8K8_9LAMI)

HSP 1 Score: 166 bits (421), Expect = 3.190e-43
Identity = 94/194 (48.45%), Postives = 121/194 (62.37%), Query Frame = 1 
Query:  469 RIKGGEQFGDVAADMSSCPSKDKGGDLGWFKKGQMVAEFEAACFENDPGTIVKVQTQFGWHVVALLSRA--ILPRQMSVDELGEIVELVRSKAGGAEEKYQFVDVREEEELTKAKLSGFINLPLSKFEEWGEKLSGDDAILDPEKDTVVLCHHGMRSNQMAQHLSTKAGFKKVWNVEGGLDAYAKQVDPSVAVY 1044
            R   GE  GD+A + S CPSKD GG LGW + GQMV EFE A F      IV  +T+FGWH++ +LS    +L +Q+   EL E     R +      + Q +DVRE +E+ KA L GF  LPL +F +WG  +S +    DPEKDT VLCHHGMRS Q+AQ L T+ GFK+V+NV GG+  YA +VD S+ VY
Sbjct:   37 RASEGEDLGDLAVEYSICPSKDDGGMLGWVRTGQMVPEFEEAAFNAPLNKIVSCKTKFGWHLLQVLSERDQLLLKQIQPSELHE-----RMQDPSFFNEAQLIDVREPDEVAKAALPGFKVLPLRQFAKWGPVISSE---FDPEKDTYVLCHHGMRSLQVAQWLQTQ-GFKRVFNVSGGIHEYAVKVDESIPVY 221
[Close]
BLAST of mRNA_S-dermatodea_contig12558.1578.1 vs. uniprot
Match: A0A1S2XLP3_CICAR (rhodanese-like/PpiC domain-containing protein 12, chloroplastic n=1 Tax=Cicer arietinum TaxID=3827 RepID=A0A1S2XLP3_CICAR)

HSP 1 Score: 168 bits (426), Expect = 5.120e-43
Identity = 92/193 (47.67%), Postives = 126/193 (65.28%), Query Frame = 1 
Query:  469 RIKGGEQFGDVAADMSSCPSKDKGGDLGWFKKGQMVAEFEAACFENDPGTIVKVQTQFGWHVVALLSRAILPRQMSV-DELGEIVELVRSKAGGAEEKYQFVDVREEEELTKAKLSGFINLPLSKFEEWGEKLSGDDAILDPEKDTVVLCHHGMRSNQMAQHLSTKAGFKKVWNVEGGLDAYAKQVDPSVAVY 1044
            RI  GE   D+A + S CPSK++GG LGW +KGQMV EFE A F      IV+ +TQFGWH++ +LS     R+ SV  ++      V+ +     E+ Q +DVRE +E+TKA L GF  LPL +F  WG +++      +PEKDT VLCHHG+RS Q+A+ L ++ GF+KV+N+ GG+ AYA+QVDPSV  Y
Sbjct:  108 RITSGEDLSDLAVEYSICPSKEEGGMLGWVRKGQMVPEFEEAAFGAPLNKIVRCKTQFGWHLLQVLSE----REESVLQDIQPDALHVKFQDPNFSEEAQLIDVREPDEVTKASLPGFTVLPLRQFGSWGPEINSK---FNPEKDTYVLCHHGVRSLQVARWLQSQ-GFRKVYNISGGIHAYAEQVDPSVPTY 292
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12558.1578.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFM0_ECTSI2.810e-15174.62Peptidyl prolyl cis/trans isomerase like n=2 Tax=E... [more]
M2Y4U7_GALSU1.390e-5345.28Peptidyl-prolyl cis-trans isomerase n=1 Tax=Galdie... [more]
A0A4D9D039_9STRA1.280e-4946.05Peptidyl-prolyl cis-trans isomerase n=1 Tax=Nannoc... [more]
I2CR14_NANGC3.260e-4846.05Peptidyl prolyl cis trans isomerase like protein n... [more]
A0A7S2JMB7_9EUKA7.580e-4646.86Hypothetical protein (Fragment) n=1 Tax=Cyanoptych... [more]
A0A8J5X8B1_DIALT1.950e-4541.51Peptidyl-prolyl cis-trans isomerase n=1 Tax=Diacro... [more]
A0A2V3IYG3_9FLOR6.360e-4440.38Peptidyl-prolyl cis-trans isomerase n=1 Tax=Gracil... [more]
R7QD57_CHOCR9.760e-4439.66Peptidyl-prolyl cis-trans isomerase n=1 Tax=Chondr... [more]
S8D8K8_9LAMI3.190e-4348.45Peptidyl-prolyl cis-trans isomerase (Fragment) n=1... [more]
A0A1S2XLP3_CICAR5.120e-4347.67rhodanese-like/PpiC domain-containing protein 12, ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12558contigS-dermatodea_contig12558:696..6600 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score459.9
Seed ortholog evalue9.8e-127
Seed eggNOG ortholog2880.D8LFM0
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009507,GO:0009536,GO:0009719,GO:0009725,GO:0009735,GO:0010033,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0050896
EggNOG free text desc.thiosulfate sulfurtransferase activity
EggNOG OGsCOG0476@1,KOG2017@2759
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionpeptidyl prolyl cis/trans isomerase like
Ec32 orthologEc-04_001720.1
Exons5
Model size2730
Cds size981
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924252.5383782-UTR-S-dermatodea_contig12558:695..7611622924252.5383782-UTR-S-dermatodea_contig12558:695..761Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12558 696..761 +
1694079126.6268957-UTR-S-dermatodea_contig12558:695..7611694079126.6268957-UTR-S-dermatodea_contig12558:695..761Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12558 696..761 +
1622924252.6076581-UTR-S-dermatodea_contig12558:4917..66001622924252.6076581-UTR-S-dermatodea_contig12558:4917..6600Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12558 4918..6600 +
1694079126.7042606-UTR-S-dermatodea_contig12558:4917..66001694079126.7042606-UTR-S-dermatodea_contig12558:4917..6600Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12558 4918..6600 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924252.554275-CDS-S-dermatodea_contig12558:761..9311622924252.554275-CDS-S-dermatodea_contig12558:761..931Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12558 762..931 +
1694079126.6429534-CDS-S-dermatodea_contig12558:761..9311694079126.6429534-CDS-S-dermatodea_contig12558:761..931Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12558 762..931 +
1622924252.5637422-CDS-S-dermatodea_contig12558:1540..19581622924252.5637422-CDS-S-dermatodea_contig12558:1540..1958Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12558 1541..1958 +
1694079126.6593754-CDS-S-dermatodea_contig12558:1540..19581694079126.6593754-CDS-S-dermatodea_contig12558:1540..1958Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12558 1541..1958 +
1622924252.5729947-CDS-S-dermatodea_contig12558:2517..26771622924252.5729947-CDS-S-dermatodea_contig12558:2517..2677Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12558 2518..2677 +
1694079126.6703956-CDS-S-dermatodea_contig12558:2517..26771694079126.6703956-CDS-S-dermatodea_contig12558:2517..2677Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12558 2518..2677 +
1622924252.584477-CDS-S-dermatodea_contig12558:3534..36491622924252.584477-CDS-S-dermatodea_contig12558:3534..3649Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12558 3535..3649 +
1694079126.6794965-CDS-S-dermatodea_contig12558:3534..36491694079126.6794965-CDS-S-dermatodea_contig12558:3534..3649Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12558 3535..3649 +
1622924252.59458-CDS-S-dermatodea_contig12558:4799..49171622924252.59458-CDS-S-dermatodea_contig12558:4799..4917Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12558 4800..4917 +
1694079126.6884472-CDS-S-dermatodea_contig12558:4799..49171694079126.6884472-CDS-S-dermatodea_contig12558:4799..4917Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12558 4800..4917 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12558.1578.1prot_S-dermatodea_contig12558.1578.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12558 762..4917 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12558.1578.1

>prot_S-dermatodea_contig12558.1578.1 ID=prot_S-dermatodea_contig12558.1578.1|Name=mRNA_S-dermatodea_contig12558.1578.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=327bp
MRVSCSFSRQQAAVALIVGRRFASAFVGAPRCGILTSAASSSSSTSVAMD
AQSQGNRLGDRRWLHALPGHQERSLARFPSPSLPVVAAAYAKRRPCSGHP
LMMSSMTGAVSGEEICRAAHVLCADEASAEAALTRIKGGEQFGDVAADMS
SCPSKDKGGDLGWFKKGQMVAEFEAACFENDPGTIVKVQTQFGWHVVALL
SRAILPRQMSVDELGEIVELVRSKAGGAEEKYQFVDVREEEELTKAKLSG
FINLPLSKFEEWGEKLSGDDAILDPEKDTVVLCHHGMRSNQMAQHLSTKA
GFKKVWNVEGGLDAYAKQVDPSVAVY*
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mRNA from alignment at S-dermatodea_contig12558:696..6600+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12558.1578.1 ID=mRNA_S-dermatodea_contig12558.1578.1|Name=mRNA_S-dermatodea_contig12558.1578.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5905bp|location=Sequence derived from alignment at S-dermatodea_contig12558:696..6600+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCGAACTACTGCTCTGTTCTGGCTAGAGACGCATCCCTCTGTCCCTCTC
AACACACACATACACGATGCGAGTCAGTTGCTCATTCTCTCGCCAGCAGG
CTGCTGTCGCCTTGATCGTTGGTCGGCGTTTTGCGAGCGCGTTCGTGGGG
GCTCCTCGATGTGGCATCCTCACGTCCGCCGCTAGCAGCAGCAGTAGCAC
CTCGGTTGCGATGGACGCGCAGTCGCAGGGCAACAGGTGCGTTCAGGTGG
CGGCCTGGCGAAACACTGCGAGTGGGCTGAGGCGTGTGTGTGTGTGTGTG
TGTGTGTAGCCTCGCAGCGTGTGTTGTTGGAGAAGTAGATCCCAGGTTGC
AGGTTGGACGTGCTGCAACTTCGCCCTCATGCGTGCATCGTACAAAAGCA
ACTCGTGGGAGTGCATTGTCGAACACAGCTGTGCTGTAGTTGTGCTCGTC
AGCAGCAAGTTGCACCCTATTCACGATTATGGGGGGTCAAGTGCTGCAAG
TCCATGCATATAGTAGGGGGAGGTTTAAAGGGCACACGAAGCCAAGGCAC
CGAGACACCTTGCACCTCTTCTGCGGCAGAGAAAGAGAACTCGAACCGGC
ATGCATCATCACATGACATGTAGTTTGCCAGTCGTCGGCGTAAAAGCGCC
AACAAAATACTTGCACTCTGTAACGAACAGTTTCTGCTGTCTGAATATTT
TATCTTCAGTAACACGGGCCGTTCACAAGTTGGGGTCTTCTCACGACGAA
TGAACCGCGCTGCACTTCAGGCAACCCTTACGAACAGCCCCCCCCTCCCC
CCCCCCCACCCTACCCATACAATGCCATAACCCCAAAACGGAAAGGCTGG
GCGACAGACGATGGCTTCACGCGCTGCCGGGACACCAGGAGCGGAGCTTG
GCGCGCTTCCCCAGCCCATCTCTGCCCGTCGTCGCCGCGGCTTACGCTAA
GCGGCGACCATGCTCAGGCCACCCCCTCATGATGTCCTCGATGACAGGCG
CCGTTTCCGGCGAAGAGATCTGCCGCGCGGCGCACGTCTTGTGCGCAGAC
GAGGCGAGCGCCGAGGCTGCACTGACTCGTATCAAGGGGGGCGAGCAGTT
TGGGGATGTGGCGGCGGACATGAGCTCGTGCCCGTCCAAGGACAAGGGGG
GGGACTTGGGGTGGTTCAAGAAGGGGCAGATGGTCGCGGAGTTCGAGGCC
GCGTGCTTCGAGAACGACCCGGGGACGATAGTCAAGGTTCAGACGCAGTT
CGGGTGGCACGTGGTGAGTTTGCAGCCAGGTACCAGGTGCTTTCTTGAAT
GTCGGTGCGTGCTTTGTTAGAGCTCTGTTTACAGTATGTATGCGTTTTTT
TGCTGATTTTCTGCTGTGCTGCCGTCGTTGCTGCGGAAAAGTCTCGCGGG
TGAAATCGTCTCGCCTTTTGATGGGACGCAATAACGATGTTTGCCACGCC
TCTCCTTACCCTCACCCCCCAAGTTTAAAGGTAGTGCGTCATGACGAGGC
AGTGCGTCACGACGAGGGGCAGCATGCCGAGAGGCAAGCGTGTTACCGCC
ATCTACCTGTCTGTCCGTTATATTTTGGCCGTAGACGACGGAACCCACCA
GGGAAGCACGACCGCCAGAGGCGGTCGCTTCCAATACACTGCGGCCAAGC
AACCCCCGGGCTCACCTCCCTACTCCCACGCCGTGTATAACATCCTTGCT
TTACAGTTCGCTATGATATCGAGAGAGCAATGCTCCAATTGTGGTTAGTC
TTCGCAGCCGCTGCCAGCTTGCCTGATTGATCTGCTCCGGCCCTGTAATT
TTTTTGTTTTTCTAAACCCAAGGTGGCCTTGCTCTCTAGGGCAATCCTCC
CGCGCCAGATGTCGGTGGACGAGCTGGGCGAGATCGTGGAGCTGGTTCGG
AGCAAAGCCGGCGGCGCGGAGGAAAAGTACCAGTTTGTGGACGTACGGGA
AGAGGAGGAGCTGACGAAGGCCAAGTTGTCCGGTGAGGGAACGCTTTGGT
AACTCGGTGGGTACGGACAGGGGTGTAGTGAAGCCACGCTGCCCCCCGAT
GTCCGGATGTATTGGATGCGCACCGTGGGCTTGAGTTTTTATTACAGCCC
GTCTGTATGATACAGTATACAGCATATATACCATCAGGTTTTCAATATTG
AATATTCATACAAGTATTCACTGCGTGTCTTCGCAATCCGAACAAATACG
TTTTTTCCTGAGGAAAAATACGAGAATATTCAAAAACACGCCGCAGCGAA
AATTATTGGAACCCCCGTGTGCGAGCGTTTCACCGCGCCGCGAACATGGC
CAGTCTCAGTCTGAGAGTAGTGTGATCCACCTCCTGCACCCTCGTTATAG
CAGTGTACAGCTCAACCTCGTGGATCGTCCTCGACTGACCTGCCATAGTG
TAAAGAAGGGCGGTGCACTTGCGATCTCGCGGGTGAGATGAAGCCGCAGT
TCGTGAGTCCATCCTGGCAAGTTTTACGCACGCGTGGGTTGTGACGGCGT
CGTCCTAAACTTCGAAGAGATTCTGCCGTGTTGCTTTTGGGGGTGCGACG
GGGGAACCTTTCTGTGTTGGCGCGATGAACTAACGTCCAATGTTTTACTG
GAGGTGGCAAGCCAAATCGTTTGGTGTGCGTGTCGGCGAGGAAGCACTAC
TGTGGCCTTGGCCACGAGAACGACCAATTAATACTCAACTTGGTAAGCTT
CCACCTACACCAGATACGTGGCGTAGCTGTTGCGTCGGTTCCGTCTCCCC
CGGTGGGAATCGATCGCACCCTCTCTCACGAGTTCACCCGGATGCCTCCT
GTGCGTTGTGCGTTTCTCGGCGCTCTTGACACGCCGCAGGTTTCATCAAC
CTTCCGCTCTCGAAGTTTGAGGAGTGGGGGGAAAAGCTTAGCGGGGACGA
CGCCATCCTCGACCCAGAGAAGGATACCGTCGTGTTGTGCCACCACGGAA
TGAGGTATATTATAGTAGAGTATAGTGCAACGGGTGCATGTGTCGTTTTA
CTGGTAAGTGGCGCCCTTGACACTGCCGCTCTCGAAGTTCGACACGCTGC
GCCATAGCGGGCACGCGAGAAGAGCACCTACCTGTTGAGTTCGTAGAAGA
CTGTTGTAGTGTTTCTCCCATCGGAAAAAAGCTAAATATGCTGCCGTGGC
GATGTAATATGTCGACTATAGCGTGTATTGATTGATTGATTGATTGATTG
ATTGATTGATTGATGGATTGATTATTACACTTACAACCGAACTGCCCACC
ACGCTGCCGATCCCGCCATCTCGTGGTCGTCACATTATAGATCGAGAGAT
CGGGAAAAAACTTCGGAATTACGTATACAGACAGTACATACAGTAGTAGG
AAAGAAATGACACAAACTCTCGGAAGCAGAGGGGACATTCCTCGGAACTT
GGAATTACTATTATGCAAGCAATGCATGTGGCCACGTGGGATGTTCGATG
AACCAGTTTAGCAACCGCCGCCGCCGAACAAGCACCAGCACTAAATGTAA
TAGTGCTGTCGTGGGTTACCCCTCCGTCTCCGAACTAGAGGAGCGAGACT
CGTCGCCGAATGTGCTTGAACGTTCGTCAGGGTCACTCGATTGTTTCTAA
CCCTTGTGACTACAAACGCCAACTCCGCCGCGCTCCACCCCTAATACGGA
GGTACCAGGTACAAAGTAATACTTGTATCAGTATAATGTAAATCATGACC
TTGTATCTGCTCAGTAGCGTACAAGTATTAAAGTGTTGTTTTAAAATGTT
GGCCCGAAACGCCTCTGTGATATTTTTTTGAGTTTTTGATTTATTTATTT
ATTTATTTGACGTTTCATGCCGGAAGATTTGCTGATGTTGTAATAAGGCC
AGACTATTATAGATTGATTGACTACATGTATGTTCAATCATAGTATACTG
TAGTATGTTGGGTATATACTACTATTACTATTATACTACTATTACTATTA
TACTACTATTACTATTATACTACTACTACTATTATACTACTATTACTATT
ATACTAATATTACTATTATACTACTATTACTATTATACTACTATTACTAT
TATACTAATACTACCGTGTACCTCCGTAATGCGCCGTGATGCTTGCCTCG
CAAGGTCGAACCAGATGGCGCAACACCTATCCACGAAAGCGGGATTCAAG
AAGGTGTGGAACGTGGAGGGCGGCTTAGACGCCTACGCGAAGCAGGTCGA
CCCCTCCGTCGCGGTCTACTAATTTTTAATTCCGCCAGCTAAGCCACGGC
CCAGCCGAGCTCGTTTTCGTTCTCAACACCGTGGACCAAGAAAAAGAAGG
GAAGATGGGCGCGAGAAAAAGAAGAATCATCACGTTTCGGGATGCATGGT
CACAAAGCTGGACAACACAGCCGCCGTGTCCTAGAAACTTTGGTTCTCCG
GGAGGCCGGCCGAAGAAAGATAGGAAAAAGCGTCTGTTTGATATTTTCCG
CACAGAGCTGTGCGTCTTACGAGCACACACCCAGGCAAAGAAGACGAGCA
GGAGCAGAAAAAAACGTCCACATGTTGGGATGTATTTGTCACCAAGCCGG
CGTGCCCTGGAAACTTAAACTTTGCTTCTCCGGGAGGCCGACCGAGGAAA
TGAAGAAAAAAACGTCGTTGTTTTTTTATTTGAACCTTGTCGCAGAGCTG
TGCGTCTTACGTGCACCCCCAGGCAGGGTGGTGGTTTTTGCTTGGGTGGT
TCGCACTTCGCACCGCGAGGGAAGCGCATCTTGCAGGTTATCGTACCATG
GATACCTCATATCAACTACTGATTTTGTTAAGCAATTCGCATGCCGATAA
AAGAAGAAAGCAAATACAAGAGGCATAAGGTAGATTATATACTTTGACGG
GATACAACAACGAGGTAGCTCGGGCAGGCGTCGTGGGGGCGTGTGTTCCC
GCTTTTGCTCACATCCATACTGGTGGTGATCTTGTGAGTGAATACCTTAT
GTAGTTGTGGATTGTCTACCGGAAGACGGGGCAGCAGGCGAACAGGTGAT
GATGTGGGGAGGAAAATGTATCGGCGGTCCAGGAGTAGGCCGGGGAAAAG
GCACGGTAGGAATTGTAGCGTATCCCTTTCCCTCTTCCCCCCCTCTCTTT
ACTGTACCACATGTCGAAAACGCGTGGTGTTTCATTTTGGTGACATCTAC
GAGAGCGGGCGGCAAATTTGACGCAAACGCCTTCCTGTTTTACGGGCAAC
TGCTGATCATCACGTGCGACCTTTGGGGCGACGTATGCATGCAAGGGCGC
TGTGGTGTGTGGTACAGTATCCTTGTGCTATGATACACACGTGAGCTTTG
GAAACGTTTCGGAGTGGACGGGATGTATGTACGCGCTTTAGACGCGGTAC
TTACGGATGGATGTCTCCAGGCGATCCAAGCGTGTCTGACCCAACCACGG
TCAAACGCACCACCCCCGTACGGCTTTTTCTGATCGACACCGTACCAAAC
TGCCTAACTACAGTAGCAACTTCAATTCAGGGTACCTCTCTCACATGTAA
TGACAACGAACACGGCAAGCACAAAAATCTCCACCATCATATGCAGCATC
ATAAACTTAAAAACGCACGCGTGAAACGCACGCCTATGCGCCCCCAGCTT
TGGCCTGCGTTCCGCGCACTGTATCAATCATATCATAGGATATAGCCCCC
GCAGCGACTTTTCAAGGCGGAGAAGGCCATCTAAACACCTTGGAAGTGTT
ATCGTCAGACGCTGTCACGATCAAAACAGGAAACTCTACCCCGCCCGTCG
GCACCGCTGCCGCGGCAGCCTCCTGCGGTGGTCGAGGGTCTACCAATCGC
ATGTCCAGGATCATGTCGGTGTGGCCCGTGAAAGTCTCCATGCATAACCC
CGTGCGGGCGTCCCAAACGCGCACGTTCCCATCCACACAAGACGTGAAGA
CCAAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig12558:696..6600+

>mRNA_S-dermatodea_contig12558.1578.1 ID=mRNA_S-dermatodea_contig12558.1578.1|Name=mRNA_S-dermatodea_contig12558.1578.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1962bp|location=Sequence derived from alignment at S-dermatodea_contig12558:696..6600+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCGAGTCAGTTGCTCATTCTCTCGCCAGCAGGCTGCTGTCGCCTTGAT
CGTTGGTCGGCGTTTTGCGAGCGCGTTCGTGGGGGCTCCTCGATGTGGCA
TCCTCACGTCCGCCGCTAGCAGCAGCAGTAGCACCTCGGTTGCGATGGAC
GCGCAGTCGCAGGGCAACAGATGCGAGTCAGTTGCTCATTCTCTCGCCAG
CAGGCTGCTGTCGCCTTGATCGTTGGTCGGCGTTTTGCGAGCGCGTTCGT
GGGGGCTCCTCGATGTGGCATCCTCACGTCCGCCGCTAGCAGCAGCAGTA
GCACCTCGGTTGCGATGGACGCGCAGTCGCAGGGCAACAGGCTGGGCGAC
AGACGATGGCTTCACGCGCTGCCGGGACACCAGGAGCGGAGCTTGGCGCG
CTTCCCCAGCCCATCTCTGCCCGTCGTCGCCGCGGCTTACGCTAAGCGGC
GACCATGCTCAGGCCACCCCCTCATGATGTCCTCGATGACAGGCGCCGTT
TCCGGCGAAGAGATCTGCCGCGCGGCGCACGTCTTGTGCGCAGACGAGGC
GAGCGCCGAGGCTGCACTGACTCGTATCAAGGGGGGCGAGCAGTTTGGGG
ATGTGGCGGCGGACATGAGCTCGTGCCCGTCCAAGGACAAGGGGGGGGAC
TTGGGGTGGTTCAAGAAGGGGCAGATGGTCGCGGAGTTCGAGGCCGCGTG
CTTCGAGAACGACCCGGGGACGATAGTCAAGGTTCAGACGCAGTTCGGGT
GGCACGTGGCTGGGCGACAGACGATGGCTTCACGCGCTGCCGGGACACCA
GGAGCGGAGCTTGGCGCGCTTCCCCAGCCCATCTCTGCCCGTCGTCGCCG
CGGCTTACGCTAAGCGGCGACCATGCTCAGGCCACCCCCTCATGATGTCC
TCGATGACAGGCGCCGTTTCCGGCGAAGAGATCTGCCGCGCGGCGCACGT
CTTGTGCGCAGACGAGGCGAGCGCCGAGGCTGCACTGACTCGTATCAAGG
GGGGCGAGCAGTTTGGGGATGTGGCGGCGGACATGAGCTCGTGCCCGTCC
AAGGACAAGGGGGGGGACTTGGGGTGGTTCAAGAAGGGGCAGATGGTCGC
GGAGTTCGAGGCCGCGTGCTTCGAGAACGACCCGGGGACGATAGTCAAGG
TTCAGACGCAGTTCGGGTGGCACGTGGTGGCCTTGCTCTCTAGGGCAATC
CTCCCGCGCCAGATGTCGGTGGACGAGCTGGGCGAGATCGTGGAGCTGGT
TCGGAGCAAAGCCGGCGGCGCGGAGGAAAAGTACCAGTTTGTGGACGTAC
GGGAAGAGGAGGAGCTGACGAAGGCCAAGTTGTCCGGTGGCCTTGCTCTC
TAGGGCAATCCTCCCGCGCCAGATGTCGGTGGACGAGCTGGGCGAGATCG
TGGAGCTGGTTCGGAGCAAAGCCGGCGGCGCGGAGGAAAAGTACCAGTTT
GTGGACGTACGGGAAGAGGAGGAGCTGACGAAGGCCAAGTTGTCCGGTTT
CATCAACCTTCCGCTCTCGAAGTTTGAGGAGTGGGGGGAAAAGCTTAGCG
GGGACGACGCCATCCTCGACCCAGAGAAGGATACCGTCGTGTTGTGCCAC
CACGGAATGAGGTTTCATCAACCTTCCGCTCTCGAAGTTTGAGGAGTGGG
GGGAAAAGCTTAGCGGGGACGACGCCATCCTCGACCCAGAGAAGGATACC
GTCGTGTTGTGCCACCACGGAATGAGGTCGAACCAGATGGCGCAACACCT
ATCCACGAAAGCGGGATTCAAGAAGGTGTGGAACGTGGAGGGCGGCTTAG
ACGCCTACGCGAAGCAGGTCGACCCCTCCGTCGCGGTCTACTAAGTCGAA
CCAGATGGCGCAACACCTATCCACGAAAGCGGGATTCAAGAAGGTGTGGA
ACGTGGAGGGCGGCTTAGACGCCTACGCGAAGCAGGTCGACCCCTCCGTC
GCGGTCTACTAA
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