mRNA_S-dermatodea_contig12556.1576.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12556.1576.1
Unique NamemRNA_S-dermatodea_contig12556.1576.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12556.1576.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12556contigS-dermatodea_contig12556:1045..1596 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size270
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924252.4492018-CDS-S-dermatodea_contig12556:1044..11961622924252.4492018-CDS-S-dermatodea_contig12556:1044..1196Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12556 1045..1196 +
1694079126.5923662-CDS-S-dermatodea_contig12556:1044..11961694079126.5923662-CDS-S-dermatodea_contig12556:1044..1196Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12556 1045..1196 +
1622924252.464068-CDS-S-dermatodea_contig12556:1479..15941622924252.464068-CDS-S-dermatodea_contig12556:1479..1594Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12556 1480..1594 +
1694079126.602628-CDS-S-dermatodea_contig12556:1479..15941694079126.602628-CDS-S-dermatodea_contig12556:1479..1594Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12556 1480..1594 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12556.1576.1prot_S-dermatodea_contig12556.1576.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12556 1045..1594 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12556.1576.1

>prot_S-dermatodea_contig12556.1576.1 ID=prot_S-dermatodea_contig12556.1576.1|Name=mRNA_S-dermatodea_contig12556.1576.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=89bp
TLSLLDQQQGTAMRAAGGVVVTALCACHFQHVSSFTVPSRQPFSSTSRSK
RSWAASASSATGVERKDSTGRGRARTLMDAKGDVEEEER
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mRNA from alignment at S-dermatodea_contig12556:1045..1596+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12556.1576.1 ID=mRNA_S-dermatodea_contig12556.1576.1|Name=mRNA_S-dermatodea_contig12556.1576.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=552bp|location=Sequence derived from alignment at S-dermatodea_contig12556:1045..1596+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ACATTGAGCTTGTTGGACCAGCAGCAGGGTACGGCCATGCGAGCAGCAGG
AGGAGTGGTGGTTACGGCGCTGTGCGCGTGCCATTTCCAACACGTTAGCT
CCTTTACGGTCCCTTCCAGGCAGCCATTTTCATCCACGTCAAGGAGCAAA
AGGTATTGTAATATGTATATGTGTATCAACTGCTGTCTGTGCTGATACGC
ATACACAGGGTCGTATCTCTCGACAGAGGCATCAATGGAGGCTGCCGTGA
AGCCGCCAACGAGATGCACATTCCCGACGGGCAATGGCGCGAGGGCGATG
CAATGATCCGCGACGACGCATGTTTGCATTGCGACGGGCTGGCGGCTGCT
TGTCCCCCCCCGGTTACATGTTATAGACAAGCGTAGCTATGCATAGTCAT
ACGTATACATCATGTGTTCGCGTCCCCCTGATTAGGTCATGGGCGGCGTC
GGCTTCGTCTGCTACTGGTGTTGAACGCAAAGATAGCACCGGGCGCGGGC
GTGCAAGGACGCTCATGGACGCGAAAGGCGACGTGGAGGAGGAGGAGAGG
GA
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Coding sequence (CDS) from alignment at S-dermatodea_contig12556:1045..1596+

>mRNA_S-dermatodea_contig12556.1576.1 ID=mRNA_S-dermatodea_contig12556.1576.1|Name=mRNA_S-dermatodea_contig12556.1576.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at S-dermatodea_contig12556:1045..1596+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ACATTGAGCTTGTTGGACCAGCAGCAGGGTACGGCCATGCGAGCAGCAGG
AGGAGTGGTGGTTACGGCGCTGTGCGCGTGCCATTTCCAACACGTTAGCT
CCTTTACGGTCCCTTCCAGGCAGCCATTTTCATCCACGTCAAGGAGCAAA
AGACATTGAGCTTGTTGGACCAGCAGCAGGGTACGGCCATGCGAGCAGCA
GGAGGAGTGGTGGTTACGGCGCTGTGCGCGTGCCATTTCCAACACGTTAG
CTCCTTTACGGTCCCTTCCAGGCAGCCATTTTCATCCACGTCAAGGAGCA
AAAGGTCATGGGCGGCGTCGGCTTCGTCTGCTACTGGTGTTGAACGCAAA
GATAGCACCGGGCGCGGGCGTGCAAGGACGCTCATGGACGCGAAAGGCGA
CGTGGAGGAGGAGGAGAGGGTCATGGGCGGCGTCGGCTTCGTCTGCTACT
GGTGTTGAACGCAAAGATAGCACCGGGCGCGGGCGTGCAAGGACGCTCAT
GGACGCGAAAGGCGACGTGGAGGAGGAGGAGAGG
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