mRNA_S-dermatodea_contig12518.1562.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12518.1562.1
Unique NamemRNA_S-dermatodea_contig12518.1562.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig12518.1562.1 vs. uniprot
Match: D8LCQ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCQ2_ECTSI)

HSP 1 Score: 411 bits (1057), Expect = 6.400e-137
Identity = 206/255 (80.78%), Postives = 238/255 (93.33%), Query Frame = 1
Query:    1 QVLKGEDEGVVVEFVNPKYKAGSRTDFKKPTRLECMMQDFPKLMSKELGDSAKIGFTSFEKWLTFSPAKNDLESAAAAAADGVPPGTASSAEADFYAQAARRLKTAGRCDLGDAEEVEFAGISLSVGPRVVMLPSFATTTEDLRRKTGPGVKISSRSTLVLEGEGLVLEALDLDGALVVRAAAGARVSVRGLKVANEGWAMVPLPDDVSQVAEEDRVRGYLLEKRATKVIEVSEPGDWIVGVDGDITQVHFEVAE 765
            +VLKGEDEGVVVEFVNPKYKAGSRT+FKKPTRLECMMQDFPKLMSKELGD+AKIGFTSF+KWLTFSPAKNDLESAAAAAADGVPPGTASSAE++FYAQAARRL+ A  C++G+ E+VEFAG+ LS+GPRVV+ PSFAT+T DLR K G GVKISSRST+VLEGE L LE L+LDGALV++AA GARVSVRGLKV+NEGW MVPLP+D+SQV+EEDRVRGYL+EK+ATK+IEV+EPGDW+VGV+GD++QV F+V E
Sbjct:  459 KVLKGEDEGVVVEFVNPKYKAGSRTEFKKPTRLECMMQDFPKLMSKELGDAAKIGFTSFDKWLTFSPAKNDLESAAAAAADGVPPGTASSAESEFYAQAARRLQMAAGCEVGEPEDVEFAGVPLSMGPRVVLEPSFATSTADLRAKAGRGVKISSRSTIVLEGEDLHLEGLELDGALVIKAAPGARVSVRGLKVSNEGWVMVPLPEDLSQVSEEDRVRGYLIEKKATKLIEVTEPGDWLVGVEGDVSQVRFDVVE 713          
BLAST of mRNA_S-dermatodea_contig12518.1562.1 vs. uniprot
Match: A0A7S2Y4M2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y4M2_9STRA)

HSP 1 Score: 264 bits (675), Expect = 8.150e-81
Identity = 135/249 (54.22%), Postives = 179/249 (71.89%), Query Frame = 1
Query:    1 QVLKGEDEGVVVEFVNPKYKAGSRTDFKKPTRLECMMQDFPKLMSKELGDSAKIGFTSFEKWLTFSPAKNDLESAAAAAADGVPPGTASSAEADFYAQAARRLKTAGRCDLGDAEEVEFAGISLSVGPRVVMLPSFATTTEDLRRKTGPGVKISSRSTLVLEGEGLVLEALDLDGALVVRAAAGARVSVRGLKVANEGWAMVPLPDDVSQVAEEDRVRGYLLEKRATKVIEVSEPGDWIVGVDGDITQV 747
            +VL+GED+GVVVEFVNPKYK  +RT FKKP RLE MMQDFPKLMSKELG+ A+IGFT+ +KWL+FSPAKN L++ A  A +GVPP T SS EA+ YA  AR++K    C+LG+ EEVEF G++  +GPR+V+ PSFA T + L++K    VKIS+RS+L+LEGEG+ L++LDLDGAL +    G  ++VR L V N GW    L         E +VRGY L K  T+   ++EPG++++G DG + Q+
Sbjct:  371 KVLEGEDQGVVVEFVNPKYKDEARTLFKKPARLESMMQDFPKLMSKELGNHARIGFTTLDKWLSFSPAKNSLDTGAGNAKNGVPPATVSSGEAENYAATARKMKETTGCELGEPEEVEFEGVTFPLGPRIVLKPSFAVTQDQLKQKISSNVKISTRSSLILEGEGIKLDSLDLDGALSITVEPGVHLTVRDLAVNNAGWKFTELSQS-EHTTPEAQVRGYTLVKEGTQSYHITEPGNYVLGSDGKVVQI 618          
BLAST of mRNA_S-dermatodea_contig12518.1562.1 vs. uniprot
Match: A0A7R9VXE0_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VXE0_9STRA)

HSP 1 Score: 238 bits (607), Expect = 1.650e-73
Identity = 134/252 (53.17%), Postives = 177/252 (70.24%), Query Frame = 1
Query:    1 QVLKGEDEGVVVEFVNPKYKAGSRTDFKKPTRLECMMQDFPKLMSKELGDSAKIGFTSFEKWLTFSPAKNDLESAAAAAADGV-PPGTASSAEADFYAQAARRLKTAGR-CDLGDAEE-VEFAGISLSVGPRVVMLPSFATTTEDLRRKTGPGVKISSRSTLVLEGEGLVLEALDLDGALVVRAAAGARVSVRGLKVANEGWAMVPLPDDVSQVAEEDRVRGYLLEKRATKVIEVSEPGDWIVGVDGDITQV 747
            + L+GED+GVVVEFVNPKYK  +RT+FKKPTRLECMMQD PKL  KE+G  A IGFT+F++W +FSPAKN LES   A   G   PGT SSAE+D Y Q  R+LK AG   D+ + E+ V  AGI ++ GPRV++ P FA T E++  K   G KI++RS+LVLEGEGLV++ LDLDGALV+R      V+V GL V N+G+ +  +P+  + V EE  +RGY + KR    I ++EPG + VG DG++T++
Sbjct:  117 KTLRGEDQGVVVEFVNPKYKDDTRTEFKKPTRLECMMQDIPKLFQKEMGSDANIGFTNFDRWFSFSPAKNSLESGVDAVKGGSNAPGTMSSAESDKYVQNQRKLKFAGMDIDVTEEEDLVSVAGIPITPGPRVILCPGFAITQEEIMNKISGG-KITTRSSLVLEGEGLVVKDLDLDGALVIRTGHDCSVTVDGLVVRNQGYEIETVPEG-ADVPEEVAIRGYTMAKREVMEIIITEPGKYSVGKDGEVTKL 366          
BLAST of mRNA_S-dermatodea_contig12518.1562.1 vs. uniprot
Match: A0A836CDZ7_9STRA (Nucleotide-diphospho-sugar transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDZ7_9STRA)

HSP 1 Score: 236 bits (601), Expect = 1.990e-68
Identity = 138/261 (52.87%), Postives = 165/261 (63.22%), Query Frame = 1
Query:    1 QVLKGEDEGVVVEFVNPKYKAGSRTDFKKPTRLECMMQDFPKLMSKELGDSA-KIGFTSFEKWLTFSPAKNDLESAAAAAADGVPPGTASSAEADFYAQAARRLKTAGRCDLGDAEEVEFAGISLSVGPRVVMLPSFATTTEDLRRKTGPGVKISSRSTLVLEGEGLVLEALDLDG------------------------------ALVVRAAAGARVSVRGLKVANEGWAMVPLPDDVSQVAEEDRVRGYLLEKRATKVI 690
            + L+G+DEGVVVEFVNPKYK  SRT FKKPTRLECMMQDFPKLM++EL  S   IGFTS EKWL+FSPAKN LE+ AA A  GVPP TASSAEA+FYAQ  RR+        G    +EF G+ L +GP +V+ PSFA TT D+RRK G  VK+S+ S LVLEG G+ +E+                                   ALV++A   ARV+V GL V NEGW   PLP +   V E DRVRG++L+KRA  VI
Sbjct:  436 KTLQGKDEGVVVEFVNPKYKDASRTAFKKPTRLECMMQDFPKLMAQELDQSDFTIGFTSLEKWLSFSPAKNSLEAGAAGAPSGVPPNTASSAEAEFYAQNVRRVAATAGAAFGAPRHIEFEGVPLDLGPLLVLSPSFAITTNDIRRKFGKDVKVSTTSALVLEGPGITVESXXXXXXXXXXXXXXXXXEAHRTGSSXXXXXXXXXXALVIKACEDARVTVHGLTVRNEGWHPAPLPAE--GVPEVDRVRGFVLDKRAATVI 694          
BLAST of mRNA_S-dermatodea_contig12518.1562.1 vs. uniprot
Match: A0A7S2MCW7_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MCW7_9STRA)

HSP 1 Score: 231 bits (590), Expect = 2.620e-67
Identity = 129/253 (50.99%), Postives = 165/253 (65.22%), Query Frame = 1
Query:    1 QVLKGEDEGVVVEFVNPKYKAGSRTDFKKPTRLECMMQDFPKLMSKELGDSAKIGFTSFEKWLTFSPAKNDLESAAAAAADG-VPPGTASSAEADFYAQAARRLKTAGR--CDLGDAEEVEFAGISLSVGPRVVMLPSFATTTEDLRRKTGPGVKISSRSTLVLEGEGLVLEALDLDGALVVRAAAGARVSVRGLKVANEGWAMVPLPDDVSQVAEEDRVRGYLLEKRATKVIEVSEPGDWIVGVDGDITQVH 750
            + L+GED+GVVVEFVNPKYK  +RTDFKKPTRLECMMQD PKL  KELG  A IGFT F++W TFSPAKN LES   A  +G   PGT SSAE+D Y Q  R+LK AG   C   + + V   GI ++ GPR+++ P FA T +++  K   G  I+ RS+LVLEGEGL ++ L LDGALV+R      V V GL V N+GW +  +PD  + V E   +RGY + K     I ++EPG + +G DG + +V 
Sbjct:  498 KTLRGEDQGVVVEFVNPKYKDDTRTDFKKPTRLECMMQDIPKLFQKELGSEANIGFTMFDRWFTFSPAKNSLESGIEAVQNGNTAPGTMSSAESDKYVQNQRKLKYAGMDVCITEEKDLVSVGGIPVTPGPRIIICPGFAITKQEILAKVEGG-SITDRSSLVLEGEGLKVKNLQLDGALVIRTGHDCEVEVDGLVVKNKGWELEEIPDG-ADVPETVSIRGYTMAKHEAMEIHINEPGKYTIGPDGVVNKVE 748          
BLAST of mRNA_S-dermatodea_contig12518.1562.1 vs. uniprot
Match: K0R2Q4_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R2Q4_THAOC)

HSP 1 Score: 228 bits (580), Expect = 3.060e-66
Identity = 128/250 (51.20%), Postives = 170/250 (68.00%), Query Frame = 1
Query:    7 LKGEDEGVVVEFVNPKYKAGSRTDFKKPTRLECMMQDFPKLMSKELGDSAKIGFTSFEKWLTFSPAKNDLESAAA-AAADGVPPGTASSAEADFYAQAARRLKTAG-RCDLGDAEE-VEFAGISLSVGPRVVMLPSFATTTEDLRRKTGPGVKISSRSTLVLEGEGLVLEALDLDGALVVRAAAGARVSVRGLKVANEGWAMVPLPDDVSQVAEEDRVRGYLLEKRATKVIEVSEPGDWIVGVDGDITQV 747
            L GED+GVV+EFVNPKYK  +RT+FKKPTRLECMMQD PKL  KE+G  A IGFT+F++W TFSPAKN L++     +  G  PGT SSAE+D Y Q  R+LK AG   D+ + E+ V  AGI ++ GPRV++ P FA T  ++  K   G +I+ RS LVLEGEGL ++ LDLDGAL++R   G  V+V GL V NEG+    +P+  + V EE  +RGY + KR    I ++EPG + +G DG +T++
Sbjct:  445 LNGEDKGVVIEFVNPKYKDDTRTEFKKPTRLECMMQDIPKLFQKEMGSDASIGFTTFDRWFTFSPAKNSLDAGVDHCSGGGNAPGTMSSAESDKYIQNQRKLKFAGMEIDVTEDEDLVPVAGIPITPGPRVILCPGFAITQREVVEKIEGG-RITQRSALVLEGEGLKVKNLDLDGALIIRTGHGCDVTVDGLVVRNEGYVAEEIPEG-ADVPEEVAIRGYTMNKREATEIIITEPGKYTIGKDGVVTKI 692          
BLAST of mRNA_S-dermatodea_contig12518.1562.1 vs. uniprot
Match: B8CC52_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CC52_THAPS)

HSP 1 Score: 223 bits (567), Expect = 5.210e-65
Identity = 126/253 (49.80%), Postives = 170/253 (67.19%), Query Frame = 1
Query:    1 QVLKGEDEGVVVEFVNPKYKAGSRTDFKKPTRLECMMQDFPKLMSKELGDSAKIGFTSFEKWLTFSPAKNDLESAAA-AAADGVPPGTASSAEADFYAQAARRLKTAGRCDLGDAEE---VEFAGISLSVGPRVVMLPSFATTTEDLRRKTGPGVKISSRSTLVLEGEGLVLEALDLDGALVVRAAAGARVSVRGLKVANEGWAMVPLPDDVSQVAEEDRVRGYLLEKRATKVIEVSEPGDWIVGVDGDITQV 747
            + L+GED+GVV+EFVNPKYK  +RT+FKKPTRLECMMQD PKL  KE+G  A IGFT F++W TFSPAKN L++        G  PGT SSAE+D Y Q  R+LK AG  D+   EE   V  +GI ++ GPR+++ P FA T +++  K   G KI+ RSTLVLEGE L ++ LDLDGAL++R      V+V GL V N+G+ +  +P+  S V EE  +RGY ++K     I ++EPG + VG DG++ ++
Sbjct:  358 RTLRGEDQGVVIEFVNPKYKDDARTEFKKPTRLECMMQDIPKLFQKEMGSEANIGFTMFDRWFTFSPAKNSLDAGVEDVKKGGKAPGTMSSAESDKYIQNQRKLKFAG-VDVPVTEEKDLVSISGIPVTPGPRIILCPGFAITQQEVVEKMEGG-KITQRSTLVLEGEDLKVKNLDLDGALIIRTGHDCNVTVDGLVVRNKGFELEEVPEG-SDVPEEVAIRGYTMKKEEVMEIIINEPGKYHVGADGEVKKL 607          
BLAST of mRNA_S-dermatodea_contig12518.1562.1 vs. uniprot
Match: A0A7S0C779_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C779_9STRA)

HSP 1 Score: 221 bits (564), Expect = 1.640e-64
Identity = 121/253 (47.83%), Postives = 173/253 (68.38%), Query Frame = 1
Query:    1 QVLKGEDEGVVVEFVNPKYKAGSRTDFKKPTRLECMMQDFPKLMSKELGDSAKIGFTSFEKWLTFSPAKNDLESAAAAAADG-VPPGTASSAEADFYAQAARRLKTAGRCDLGDAEE---VEFAGISLSVGPRVVMLPSFATTTEDLRRKTGPGVKISSRSTLVLEGEGLVLEALDLDGALVVRAAAGARVSVRGLKVANEGWAMVPLPDDVSQVAEEDRVRGYLLEKRATKVIEVSEPGDWIVGVDGDITQV 747
            + LKGEDEGVVVEFVNPKYK  +RT+FKKPTRLECMMQDFPKL+ KE+G  A +GFT  ++WLTFSPAKN LE+   +  +G   PGT SSAE++ Y Q  R+L+ AG   L   EE   V  +GI+++ GPR+++ PSF+ + ++ + K   G  I+ +S+L+LEG GL+++ LDLDGAL++R      V+V GLKV N+GW +    ++ S + E   +RGY + +  TK I + +PG + +G DG + ++
Sbjct:  365 KTLKGEDEGVVVEFVNPKYKDETRTEFKKPTRLECMMQDFPKLLQKEMGKEANVGFTMLDRWLTFSPAKNSLEAGVESCKNGSTAPGTMSSAESEKYIQNQRKLRHAG-VSLPVTEEDDLVLVSGITVTPGPRIILAPSFSVSQKETKEKIQGG-SITEKSSLILEGGGLIVKNLDLDGALIIRTGPSCEVTVDGLKVQNKGWVLEENSEN-SDLPESVAIRGYTMRRYETKEIIIEDPGRYFIGEDGVVNKL 614          
BLAST of mRNA_S-dermatodea_contig12518.1562.1 vs. uniprot
Match: A0A4D9D7Z1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D7Z1_9STRA)

HSP 1 Score: 219 bits (559), Expect = 2.860e-64
Identity = 124/256 (48.44%), Postives = 171/256 (66.80%), Query Frame = 1
Query:    1 QVLKGEDEGVVVEFVNPKYKAGSRTDFKKPTRLECMMQDFPKLMSKELGDSAKIGFTSFEKWLTFSPAKNDLESAAAA-AADGVPPGTASSAEADFYAQAARRLKTAG----RCDLGDAEEVEFAGISLSVGPRVVMLPSFATTTEDLRRKTGPG-VKISSRSTLVLEGEGLVLEALDLDGALVVRAAAGARVSVRGLKVANEGWAMVPLPDDVSQVAEEDRVRGYLLEKRATKVIEVS--EPGDWIVGVDGDITQ 744
            +VL+GE +GVV EFVNPK+K  SRT F KPTRLECMMQDFPKL++KE+G  A++GFTSFEKWL+FSPAKN LE+ A A AA GVPP TASSAE DFY     +++         +L D     FA I L  GPR+++ P+ A T+++L  + G G + ++  STLVL+G G+ +E+LDLDG  ++RA   ARV+VR  KV N GW + P   D    AEE+ +RG+ + K    V+++     GD++V  +G++ +
Sbjct:  305 RVLQGEAQGVVEEFVNPKFKDSSRTAFTKPTRLECMMQDFPKLLAKEIGGKARVGFTSFEKWLSFSPAKNSLEAGAKAFAATGVPPATASSAEMDFYRAHLLKIRAVSGSRAAANLLDGPISSFADIPLETGPRIIVTPAVAVTSKELHDRVGKGRISVTGTSTLVLDGAGISVESLDLDGTFILRAGPRARVTVRDAKVRNAGWCLAPAGPDA---AEEEGIRGFRVIKDNGVVVDLGMDAEGDFLVTGNGEVVK 557          
BLAST of mRNA_S-dermatodea_contig12518.1562.1 vs. uniprot
Match: W7UBR1_9STRA (UDPglucose pyrophosphorylase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UBR1_9STRA)

HSP 1 Score: 219 bits (558), Expect = 8.510e-63
Identity = 123/256 (48.05%), Postives = 171/256 (66.80%), Query Frame = 1
Query:    1 QVLKGEDEGVVVEFVNPKYKAGSRTDFKKPTRLECMMQDFPKLMSKELGDSAKIGFTSFEKWLTFSPAKNDLESAAAA-AADGVPPGTASSAEADFYAQAARRLKTAG----RCDLGDAEEVEFAGISLSVGPRVVMLPSFATTTEDLRRKTGPG-VKISSRSTLVLEGEGLVLEALDLDGALVVRAAAGARVSVRGLKVANEGWAMVPLPDDVSQVAEEDRVRGYLLEKRATKVIEVS--EPGDWIVGVDGDITQ 744
            +VL+GE +GVV EFVNPK+K  SRT F KPTRLECMMQDFPKL++KE+G  A++GFTSFEKWL+FSPAKN LE+ A A AA GVPP TASSAE DFY     +++         +L D     FA I L  GPR+++ P+ A T+++L  + G G + ++  STLVL+G G+ +E+LDLDG  ++RA   ARV+VR  KV N GW + P   D     EE+R+RG+ + K    V+++     G+++V  +G++ +
Sbjct:  478 RVLQGEAQGVVEEFVNPKFKDSSRTAFTKPTRLECMMQDFPKLLAKEIGGKARVGFTSFEKWLSFSPAKNSLEAGAKAFAATGVPPATASSAEMDFYRAHLLKIRAVSGSRAAANLLDGPISSFADIPLETGPRIIVTPAVAVTSKELHDRVGKGRISVTGTSTLVLDGAGISVESLDLDGTFILRAGPRARVTVRDAKVRNAGWCLAPAGPDA---VEEERIRGFRVIKDNGVVVDLGMDAEGEFLVTGNGEVVK 730          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12518.1562.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCQ2_ECTSI6.400e-13780.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2Y4M2_9STRA8.150e-8154.22Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7R9VXE0_9STRA1.650e-7353.17Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A836CDZ7_9STRA1.990e-6852.87Nucleotide-diphospho-sugar transferase n=1 Tax=Tri... [more]
A0A7S2MCW7_9STRA2.620e-6750.99Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
K0R2Q4_THAOC3.060e-6651.20Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
B8CC52_THAPS5.210e-6549.80Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S0C779_9STRA1.640e-6447.83Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A4D9D7Z1_9STRA2.860e-6448.44Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7UBR1_9STRA8.510e-6348.05UDPglucose pyrophosphorylase n=1 Tax=Nannochlorops... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12518contigS-dermatodea_contig12518:1897..7006 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score351.3
Seed ortholog evalue3.4e-94
Seed eggNOG ortholog2880.D8LCQ2
Preferred nameUSP
KEGG rclassRC00002
KEGG koko:K00972,ko:K12447
KEGG ReactionR00289,R00416,R00502,R01381,R03077,R08845
KEGG Pathwayko00040,ko00052,ko00053,ko00520,ko01100,ko01130,map00040,map00052,map00053,map00520,map01100,map01130
KEGG ModuleM00014,M00361,M00362
EggNOG free text desc.Utp--glucose-1-phosphate uridylyltransferase
EggNOG OGsCOG4284@1,KOG2388@2759
EC2.7.7.23,2.7.7.64,2.7.7.83
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons6
Model size825
Cds size678
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12518.1562.1prot_S-dermatodea_contig12518.1562.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12518 1939..6901 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924251.2869284-UTR-S-dermatodea_contig12518:1896..19381622924251.2869284-UTR-S-dermatodea_contig12518:1896..1938Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12518 1897..1938 -
1694079125.639665-UTR-S-dermatodea_contig12518:1896..19381694079125.639665-UTR-S-dermatodea_contig12518:1896..1938Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12518 1897..1938 -
1622924251.362202-UTR-S-dermatodea_contig12518:6901..70061622924251.362202-UTR-S-dermatodea_contig12518:6901..7006Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12518 6902..7006 -
1694079125.7179234-UTR-S-dermatodea_contig12518:6901..70061694079125.7179234-UTR-S-dermatodea_contig12518:6901..7006Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12518 6902..7006 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924251.2971814-CDS-S-dermatodea_contig12518:1938..19771622924251.2971814-CDS-S-dermatodea_contig12518:1938..1977Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12518 1939..1977 -
1694079125.6559465-CDS-S-dermatodea_contig12518:1938..19771694079125.6559465-CDS-S-dermatodea_contig12518:1938..1977Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12518 1939..1977 -
1622924251.3096619-CDS-S-dermatodea_contig12518:2886..29831622924251.3096619-CDS-S-dermatodea_contig12518:2886..2983Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12518 2887..2983 -
1694079125.6667097-CDS-S-dermatodea_contig12518:2886..29831694079125.6667097-CDS-S-dermatodea_contig12518:2886..2983Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12518 2887..2983 -
1622924251.3217323-CDS-S-dermatodea_contig12518:4215..43921622924251.3217323-CDS-S-dermatodea_contig12518:4215..4392Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12518 4216..4392 -
1694079125.6764562-CDS-S-dermatodea_contig12518:4215..43921694079125.6764562-CDS-S-dermatodea_contig12518:4215..4392Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12518 4216..4392 -
1622924251.3319864-CDS-S-dermatodea_contig12518:5424..55791622924251.3319864-CDS-S-dermatodea_contig12518:5424..5579Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12518 5425..5579 -
1694079125.686377-CDS-S-dermatodea_contig12518:5424..55791694079125.686377-CDS-S-dermatodea_contig12518:5424..5579Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12518 5425..5579 -
1622924251.3403656-CDS-S-dermatodea_contig12518:6394..65501622924251.3403656-CDS-S-dermatodea_contig12518:6394..6550Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12518 6395..6550 -
1694079125.6971521-CDS-S-dermatodea_contig12518:6394..65501694079125.6971521-CDS-S-dermatodea_contig12518:6394..6550Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12518 6395..6550 -
1622924251.3534288-CDS-S-dermatodea_contig12518:6847..69011622924251.3534288-CDS-S-dermatodea_contig12518:6847..6901Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12518 6848..6901 -
1694079125.7094653-CDS-S-dermatodea_contig12518:6847..69011694079125.7094653-CDS-S-dermatodea_contig12518:6847..6901Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12518 6848..6901 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12518.1562.1

>prot_S-dermatodea_contig12518.1562.1 ID=prot_S-dermatodea_contig12518.1562.1|Name=mRNA_S-dermatodea_contig12518.1562.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=226bp
MMQDFPKLMSKELGDSAKIGFTSFEKWLTFSPAKNDLESAAAAAADGVPP
GTASSAEADFYAQAARRLKTAGRCDLGDAEEVEFAGISLSVGPRVVMLPS
FATTTEDLRRKTGPGVKISSRSTLVLEGEGLVLEALDLDGALVVRAAAGA
RVSVRGLKVANEGWAMVPLPDDVSQVAEEDRVRGYLLEKRATKVIEVSEP
GDWIVGVDGDITQVHFEVAERKDGP*
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mRNA from alignment at S-dermatodea_contig12518:1897..7006-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12518.1562.1 ID=mRNA_S-dermatodea_contig12518.1562.1|Name=mRNA_S-dermatodea_contig12518.1562.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5110bp|location=Sequence derived from alignment at S-dermatodea_contig12518:1897..7006- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGTCCTTAAGGGAGAGGACGAGGGAGTCGTGGTGGAATTCGTCAACCC CAAGTACAAGGCGGGCAGCCGGACGGACTTCAAAAAGCCCACCCGACTTG AATGCATGATGCAGGACTTCCCCAAGCTTATGTCCAAGGAGCTGGGCGAC TCTGCCAAGGTGTGTATCGTAGAGAGACGGGGGAGGTAAAGGGCGGGGAG GCTGCTGGACGGTGCACCCTGGATCTCATTCAGCCAAATATCGTGCAAAA TGCATAACCGGAGTCTCACCCCCAATATTGTATTGTTTTTTGTAGGGTTC CCTGGAGGAGGGGGGAGGAAGTCGATCGGACTTTCGTCTAGTTTTTTGTT TTCCAGTTCCCCTTGCCCTCGAAGATGACGGAGTTTTAGTCAAGGTTTGG AGTCTTACAACCCTCCGCCTCTTTTCTGTTTTTGTTTTTCTTCGCCCGCC GGCCAGATCGGGTTCACCTCTTTCGAAAAGTGGCTCACATTCTCGCCGGC CAAGAACGACCTCGAGTCGGCAGCGGCCGCGGCGGCAGACGGAGTGCCGC CTGGAACGGCGTCTAGCGCGGAGGCGGACTTCTATGCGCAGGCGGCGCGG AGGCTAAAGACGGTTCGTACCAGTGAATAATAAAATGCAAGGCTAATTGT AGGTGCAGCATGATGCATGTACACGTGCGACAAGAGACAGGAGCACTTGT GTACTTTTCGCGGCGTGATCGTGGTTTGTCTTTCTGTTTTTTTGTGGTTT TTGATCGATTGAATTCCACACTTGCAATTTTTTCCGCTCGGCAAAGTCTG ACCCGACCACTTGTGGTCAGGTGTGCTAATATTGAAGGGGAAAGCGTCCC CGTCTACTTCTTCATATAGTGCACTTGGTAAAGAGAAGATTGAGTAAATC ACGCCAGAGCAGGAGTCTGGATCGAACTATGTGGTGGGGTTGAGGTTTTA CGGTTGGCATGGTGTACCGTAGGTTATTCCACGATGTGGCGCCGAATATT ATTTCATCGTGAAATTGGGGACGATGGTTGCGGGCTTGCAGTCCCCCTTG GATGATATTTTTCCCGGCGAGGCATTGCAAAAGCAGTGCTGTCATCAATC TCCACTCCCGCCCCTGCCCCTGACACTTGAACGCAACATCGTGGCTGTCA CCTGGCCTTCATAGTTGGTAAATTAAGTAATGGAATCTGGCTTCGCAGTT TACCCGAGTGCGTGTCAATACTGTTTTGCTTCGGACCTTAAGGAAGGTCC TGTTGGTTTTGCCCCAGCGGCGAGGTCCCTCCTGGCACAAGTCCGTGTTT CCTTACCTCTGCTGAAATCTGTCTACGACTGCTATGATGTCACGGCGTCG CTCCGGCTGTGGTTGTTTTACCAACAAACTCTACCCCCCCCCCCCGCCGG CGTCGTTTTGGTTGTCGGTGACCGCAGGCGGGGCGTTGCGATCTTGGCGA TGCGGAGGAAGTAGAATTTGCGGGCATATCTCTCTCGGTGGGACCGCGCG TCGTGATGCTGCCGTCTTTCGCAACGACCACCGAAGACTTGCGACGGAAA ACGGGGCCCGGGGTCAAGATTTCTTCTAGAAGGTGCACACAGCAGTGTCA AAAGCAAGAGATAGCCTGTAGACCCCCCCCCCCCTCCTGTGGCTTATGTC TCAGCTTCTTTGGGTTTTTCGACTCCAGCGGTTTTGTCGACTTTGTTCGT TGACTGTAGTCGTTCTGCCACGAGAACCGGTTGTTTCTCGTGTGAGTTAT ATGCGTTGAGGTATCCGGTGTATAGGTTTGGGTTTGTGCTGAGTTGAGCC GTTACACCCCAACGGCAACTTGGTTGTGTGCGCCATTGCACCGCATAGTG GCGGGCTCTTGGCCCTCACGAATTATCTCTTCCACCTTCCATACTCTCTT CTCTATTCTGCACCCACATCCTGTTTAAGTACGGAGTCTACGATTAGACT TAGCGCCCCTAAGCACCCTTGGAGTAATTTTGTAAGCGGCACGCCTTGTT GATGAGACCCAGCGGACGCAGGACTGCCTGACCCCGAGATGGCTTCGGGG ATACGCCAGGCGTCAACCCTTGGCGTTCAATACGGTTGGTTCGGTGGTGT GCCTCAAGACGTCCGAGATGGGCAAACGAGGCCTGAAGACGTTAAGTGTG TATTTTAAACAGGCAAAAGCACGCGCGCTGAACAGCTACACAGTGGAAGG CTGGCCCCCGGCCGCCATCTGGGTGCCGTGGGCACTTGTTGGCGGGTTGC GGGGATATTTTGTTGGTGTTGCTGCGGTTTGCGAGACGGGTTCACTTGGA AAGTAACGGAATCTATCTCTGTATGTTTCATGCTCTTATGTTCTATTGCC TTATCCTCGGTTGGCGACTACCCCTGGACTCGTACATGGCCAATCAGTTG ATGTGACACCGCCATAGCGGAATGGGTTGTGATTGTCGAAACCGCAGAAG GTGTTGATTGACCTGCGTTTGCCAAGGTACACGCCTTCGTCAGCAGCAGT ACGCTCCAACACTCCGCGCGTTCGCGCATCACTCTTTCATCGTGCAACTC CGCACCCCCCCCTCCCCCCCCTCCCTCCCCCCCCCCTCGTAATTGGTGTC CCTTTCGGTTTCAGCACGCTTGTACTCGAGGGCGAAGGTTTAGTATTGGA GGCCCTGGATCTAGACGGCGCTCTGGTTGTCAGGGCAGCGGCGGGGGCGC GGGTGTCGGTTCGCGGGTTAAAGGTCGCCAACGAGGGCTGGGCAATGGTG CCGTTACCCGACGATGTGTCTCAGGTGGCGGAGGAAGACAGGTAAAACGT TTTGGGCAGCGTTACTTTTGGGGGATTGACTGATTCGTACATGTGTACTG TATGTATCGCGGATCGGCTGATTCTGACCCGACGTGTGGTCGGTTGCGCA AACAGTCAAGGGCAACGTATTATTGTATCATAAACAAGAAATTATCATTA TCGCCAGAACAGCACGATTTAGTTCAAGTATACCGCTCTTGGTGATATGC CCATAAGCGCCACCCTATTCGTCCAGTATTGTAGCGTAATACGACAGCGT GAAGAAAGCGAAGGGGAGGCGGTGGGCCGTTGTTATTTTGGCGAGGCACT CTTTGATGCGTGGACGACCGCGGGCCTTTTGTTTTTTTTTGCCTTGCCGT CTTGAGAAACCAGCTTTGTGTGATCGGGGCCGACGTTCCACTCTTTCTGC GTTGCTCACTTGGCAAGCGATATAGATTCCCGCCAACAACGCCATCCAAA ACGACATCAAACCAGTTGAGTACATGGGACATATTACCCGGAGTCGTCCG AACAGACACGTTTACCGTGTGCTTGACTTGGAACTTTTCTGGATTGCGGA CGCCTGCCTAGAATCAATCGGGATCCCAGGCTTCGCATCGGTCTGTCGGG AGCATGCGGGTCTATAGGCCGACCCTGGGCGCGAGACTTTCCGAGCGGTT GCTCGAACAGCCCGCCAGCGAATATCTCGCCTGTCCATTCGGTTTCCGCA TGGCGCAGCCGCGCACGAATTGGCCACCCTATGTTAGAAGAGTGCCCTCT TCTGCGCTACGTGTAAGAATCCGAAAAATCGGGGGTTTTCGAGAGTGCTG AGCCCAATGCGCGGATTTCTGAGGCACGCACTAGGGAGAGGTGGAATTAT TGAGATTCTCTTTTGTGACTATTTACGGGACCCGGATGAGGCCGGTCGAT CAGAAGTCGGGGAAAAATACTGTTGTCCCGCTCACATAGGGACGGGAAGT CTTTTAACAACGTCGGCTTTGACAAGAAACACAAGAAACACAAGCAAGCG TTTTCTTTTGGGTCGTCCAGCCGTCCGTCGAGATTTGTAGATCGATCGGT TCTTGGAACAGTCCTTCGCAAAACAAAATGACGACTGCCTGATGTTTTCT GCCGAGTGTACCTCACCGTGTGGGTGGAAGCAGGTCCCACTCAGCGCGCG TGTTGTAGCTACGCTCTTGTCGGTCATGGTGTCCGAGTACCGAGGTTTGC CCGCGTCTATTTCCTCCGCGCAGAGTAAGGGGCTACCTGTTGGAAAAGAG GGCCACGAAGGTGATCGAAGTCAGCGAGCCCGGCGATTGGATTGTTGGCG TCGACGGAGACATCACCCAGGTATAGTCGACAGGTGCCTTCATTTTGTCA GGCGCATCGGCGTGTTTACGCGGGCGGGAGAATGCGGCGTCCTCCAACGT GGGTCTCGCGCCTCTCTGGGGCTGCGTGTGGCGGCTTGCAGTGCCGCCAT TTTTATCAGTTTTGCTGTTTCTGTTGATCAAGTTGTTTCGCATTAATGTG TTACGGTTACGGCAGGGGGCGAAAGCACTTTCCCTTCTTACCGTAGGCGG GAAGTGTAGTTTGGCCGATCAACTACTTAGCAAAGTACGGGTGATTGGAA AGCAAGGCTTTCAGGTAGTACAGGTATGCGATCCATGACTTGGGGGGAAC GCGCGACCCCCAACGAGAACTCGGTTGCAGGAATATTGCGCGCGAATTTA TCGTCCGCCAGAGAGACAACAGCGCCCTAAGTACGCATCCTGTCGTACAA GTAGTGGAAACGTGTTCGTCGCGCTGTGAGTTGCCTGGCGCAGCCTGCGT CACGATTAGTCGGCTGGCTTTCGCCAGCCGACTATCGAATAGTGGGCATA TAGTTAACCGGATCGAAGCGGCCCCGCCGGTGAAGCCGCTTGTGGCGGTT TGGCGACAGCCAAACGCGGCTTCGCCTCCATCGGCCTTCTAGCTGTCCCA GCGCAGCCAGCAAGTTAGCTAGTCTAACAAAAGCCGTAGCCAACTCACAG CCCTATTTTTTTTTGTCTCGGTGATGCGTCCAGAGCGAACGCCTCCTCTT TGGCACGCAATGGCCTCCTTCCGCACATCATTTACCGCATTACGTGCTTC CCTCTCGATCGCTGGTGAGCTTGCGGCTACATCGTGTGCCCCAAGGGCGC GTTTTTTTAAAATATGGATGCTCCTCGCTCAAACAGCTGCCCGCGTGCTC CAACGCTGCTCTGTTTACGCTGACGACAGGTGCACTTCGAGGTGGCGGAG AGGAAGGACGGTCCATGAGAGGTGACGCCGCCGCCTCCCTAGCTGGCTGT TACCTAGGCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig12518:1897..7006-

>mRNA_S-dermatodea_contig12518.1562.1 ID=mRNA_S-dermatodea_contig12518.1562.1|Name=mRNA_S-dermatodea_contig12518.1562.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1356bp|location=Sequence derived from alignment at S-dermatodea_contig12518:1897..7006- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATGCAGGACTTCCCCAAGCTTATGTCCAAGGAGCTGGGCGACTCTGC
CAAGATGATGCAGGACTTCCCCAAGCTTATGTCCAAGGAGCTGGGCGACT
CTGCCAAGATCGGGTTCACCTCTTTCGAAAAGTGGCTCACATTCTCGCCG
GCCAAGAACGACCTCGAGTCGGCAGCGGCCGCGGCGGCAGACGGAGTGCC
GCCTGGAACGGCGTCTAGCGCGGAGGCGGACTTCTATGCGCAGGCGGCGC
GGAGGCTAAAGACGATCGGGTTCACCTCTTTCGAAAAGTGGCTCACATTC
TCGCCGGCCAAGAACGACCTCGAGTCGGCAGCGGCCGCGGCGGCAGACGG
AGTGCCGCCTGGAACGGCGTCTAGCGCGGAGGCGGACTTCTATGCGCAGG
CGGCGCGGAGGCTAAAGACGGCGGGGCGTTGCGATCTTGGCGATGCGGAG
GAAGTAGAATTTGCGGGCATATCTCTCTCGGTGGGACCGCGCGTCGTGAT
GCTGCCGTCTTTCGCAACGACCACCGAAGACTTGCGACGGAAAACGGGGC
CCGGGGTCAAGATTTCTTCTAGAAGGCGGGGCGTTGCGATCTTGGCGATG
CGGAGGAAGTAGAATTTGCGGGCATATCTCTCTCGGTGGGACCGCGCGTC
GTGATGCTGCCGTCTTTCGCAACGACCACCGAAGACTTGCGACGGAAAAC
GGGGCCCGGGGTCAAGATTTCTTCTAGAAGCACGCTTGTACTCGAGGGCG
AAGGTTTAGTATTGGAGGCCCTGGATCTAGACGGCGCTCTGGTTGTCAGG
GCAGCGGCGGGGGCGCGGGTGTCGGTTCGCGGGTTAAAGGTCGCCAACGA
GGGCTGGGCAATGGTGCCGTTACCCGACGATGTGTCTCAGGTGGCGGAGG
AAGACAGCACGCTTGTACTCGAGGGCGAAGGTTTAGTATTGGAGGCCCTG
GATCTAGACGGCGCTCTGGTTGTCAGGGCAGCGGCGGGGGCGCGGGTGTC
GGTTCGCGGGTTAAAGGTCGCCAACGAGGGCTGGGCAATGGTGCCGTTAC
CCGACGATGTGTCTCAGGTGGCGGAGGAAGACAGAGTAAGGGGCTACCTG
TTGGAAAAGAGGGCCACGAAGGTGATCGAAGTCAGCGAGCCCGGCGATTG
GATTGTTGGCGTCGACGGAGACATCACCCAGAGTAAGGGGCTACCTGTTG
GAAAAGAGGGCCACGAAGGTGATCGAAGTCAGCGAGCCCGGCGATTGGAT
TGTTGGCGTCGACGGAGACATCACCCAGGTGCACTTCGAGGTGGCGGAGA
GGAAGGACGGTCCATGAGTGCACTTCGAGGTGGCGGAGAGGAAGGACGGT
CCATGA
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