mRNA_S-dermatodea_contig12511.1561.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12511.1561.1
Unique NamemRNA_S-dermatodea_contig12511.1561.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12511.1561.1 vs. uniprot
Match: D8LQ95_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ95_ECTSI)

HSP 1 Score: 171 bits (433), Expect = 1.010e-45
Identity = 78/112 (69.64%), Postives = 90/112 (80.36%), Query Frame = 2 
Query:    2 EAGADVMQAAAGLPILEIPELNPLRKIVYKMFRGEALPDDVTAVAKLEAGGIDYLGVDFFSELFLGLWHDAHGNEIEAESYVVAACTNTYPKSDDLWYHTPRMHARIRGWTL 337
            EAGADV Q AA LP L I E N LR+ VY MFRG   P+DV  VAK+ AGGIDY GVDFFSE+FLGL+HDAHGNE+EAE+Y++AAC NTYP  DDLWYHTPR+HA+ R WT+
Sbjct:  186 EAGADVEQVAAALPPLPISEPNALRRTVYNMFRGGPTPEDVQQVAKVGAGGIDYFGVDFFSEVFLGLYHDAHGNELEAETYILAACGNTYPNPDDLWYHTPRIHAKARNWTI 297
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BLAST of mRNA_S-dermatodea_contig12511.1561.1 vs. uniprot
Match: A0A383VA49_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VA49_TETOB)

HSP 1 Score: 62.0 bits (149), Expect = 4.540e-7
Identity = 32/92 (34.78%), Postives = 50/92 (54.35%), Query Frame = 2 
Query:   65 NPLRKIVYKMFRGEALPDDVTAVAKLEAGGIDYLGVDFFSELFLGLWHDAHGNEIEAESYVVAACTNTYPK-SDDLWYHTPRMHARIRGWTL 337
             P+ +  Y+ F+  + PD + A A  + GG D     F++ L++GLWH+AHGN  EAE  +V A    Y + S D      ++H + R WT+
Sbjct:  174 RPVMRAAYECFQSGSSPDSILAAAN-DNGGHD----SFYALLYVGLWHEAHGNTAEAEKAMVQAVQTQYAQLSGDYMASLAKVHCQRRSWTV 260
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BLAST of mRNA_S-dermatodea_contig12511.1561.1 vs. uniprot
Match: A0A8J4BUZ0_9CHLO (Uncharacterized protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4BUZ0_9CHLO)

HSP 1 Score: 59.3 bits (142), Expect = 4.950e-6
Identity = 33/92 (35.87%), Postives = 47/92 (51.09%), Query Frame = 2 
Query:   65 NPLRKIVYKMFRGEALPDDVTAVAKLEAGGIDYLGVDFFSELFLGLWHDAHGNEIEAESYVVAACTNTYPK-SDDLWYHTPRMHARIRGWTL 337
             P+ +  Y+ FR   LP  + A    + GG D     F+  L++GLWH+AHGN  EA+  +VAA    Y + S D      R+H + R W L
Sbjct:  204 RPVMRAAYECFRTGELPAKIMAQVS-DNGGHD----TFYGLLYVGLWHEAHGNATEAKKAIVAAVQTPYARLSGDYMASLARVHCQRRNWEL 290
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BLAST of mRNA_S-dermatodea_contig12511.1561.1 vs. uniprot
Match: A0A2P6TL70_CHLSO (Putative 2,3-bisphosphoglycerate-independent phosphoglycerate mutase isoform X2 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TL70_CHLSO)

HSP 1 Score: 60.5 bits (145), Expect = 5.490e-6
Identity = 38/112 (33.93%), Postives = 56/112 (50.00%), Query Frame = 2 
Query:    8 GADVMQAAAGLPILEIP-ELNPLRKIVYKMFRGEALPDDVTAVAKLEAGGIDYLGVDFFSELFLGLWHDAHGNEIEAESYVVAACTNTYPK-SDDLWYHTPRMHARIRGWTL 337
            GAD    AA    LE+  +  P+ +  Y+ FR  A PD +   A+ +  G D      ++ L++GLWH+AHGN   AE+ +  AC   Y + S D      R+H   RGW +
Sbjct:  578 GAD----AARQQFLEVGRDPRPVMRAAYECFRTGAQPDAILQAARGDQQGHDAC----YALLYVGLWHEAHGNAAAAEAAITQACRTQYAQQSGDYMAALARVHCSRRGWEV 681
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BLAST of mRNA_S-dermatodea_contig12511.1561.1 vs. uniprot
Match: A0A2P6V8C4_9CHLO (TPR repeat n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V8C4_9CHLO)

HSP 1 Score: 56.6 bits (135), Expect = 9.750e-6
Identity = 30/93 (32.26%), Postives = 50/93 (53.76%), Query Frame = 2 
Query:   65 NPLRKIVYKMFRGEALPDDVTAVAKLEAGGIDYLGVD-FFSELFLGLWHDAHGNEIEAESYVVAACTNTYPKSD-DLWYHTPRMHARIRGWTL 337
             P+ +  Y+ F+  A P+ +     L+A G D  G D F+++L++GLWH+AHGN   A++ +  A    Y +S  D       +H + RGW +
Sbjct:   92 RPVMRAAYECFKTWAQPEAI-----LQAAGGDRQGHDAFYAQLYMGLWHEAHGNTEAAQAAITEAVRTLYGRSSGDYMAALAAVHCQRRGWQV 179
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BLAST of mRNA_S-dermatodea_contig12511.1561.1 vs. uniprot
Match: A0A7J7PRI4_9CHLO (Uncharacterized protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PRI4_9CHLO)

HSP 1 Score: 57.0 bits (136), Expect = 1.290e-5
Identity = 29/90 (32.22%), Postives = 50/90 (55.56%), Query Frame = 2 
Query:   65 NPLRKIVYKMFRGEALPDDVTAVAKLEAGGIDYLGVDFFSELFLGLWHDAHGNEIEAESYVVAACTNTYPK-SDDLWYHTPRMHARIRGW 331
             P+ +  Y+ F+  + P+ +   A  ++GG D     F++ L++GLWH+AHGN  EAE+ +V +    Y + S D      ++H + RGW
Sbjct:  131 RPVMRAAYECFQSGSSPEAILQAAT-DSGGHD----SFYALLYVGLWHEAHGNAAEAEAAMVKSVQTRYAQLSGDYMAGLAKVHCQRRGW 215
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BLAST of mRNA_S-dermatodea_contig12511.1561.1 vs. uniprot
Match: A0A8J4EVV0_9CHLO (Uncharacterized protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4EVV0_9CHLO)

HSP 1 Score: 57.4 bits (137), Expect = 2.250e-5
Identity = 31/90 (34.44%), Postives = 46/90 (51.11%), Query Frame = 2 
Query:   65 NPLRKIVYKMFRGEALPDDVTAVAKLEAGGIDYLGVDFFSELFLGLWHDAHGNEIEAESYVVAACTNTYPK-SDDLWYHTPRMHARIRGW 331
             P+ +  Y+ FR   LPD + A    + GG D     F+  L++GLWH+AHG+  EA+  + AA    Y + S D      R+H + R W
Sbjct:  213 RPVMRAAYECFRTGELPDKIMAQVS-DNGGHD----TFYGLLYVGLWHEAHGDTTEAKKAITAAVQTPYARLSGDYMASLARVHCQRRNW 297
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BLAST of mRNA_S-dermatodea_contig12511.1561.1 vs. uniprot
Match: A0A835YGN9_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835YGN9_9CHLO)

HSP 1 Score: 56.2 bits (134), Expect = 3.620e-5
Identity = 29/92 (31.52%), Postives = 46/92 (50.00%), Query Frame = 2 
Query:   65 NPLRKIVYKMFRGEALPDDVTAVAKLEAGGIDYLGVDFFSELFLGLWHDAHGNEIEAESYVVAACTNTYPK-SDDLWYHTPRMHARIRGWTL 337
             P+ +  Y+ FR  A P+ + A    + GG D     F+  L++GLWH++HG   EA++ +  A    Y + S D      R+H   RGW +
Sbjct:  164 RPVMRAAYECFRTGAQPEAILAQVS-DKGGHD----SFYGNLYVGLWHESHGQPAEAQAAITKAVRTPYARLSGDYMASLARVHCLRRGWPI 250
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BLAST of mRNA_S-dermatodea_contig12511.1561.1 vs. uniprot
Match: A0A250XAP4_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XAP4_9CHLO)

HSP 1 Score: 55.8 bits (133), Expect = 5.880e-5
Identity = 29/92 (31.52%), Postives = 48/92 (52.17%), Query Frame = 2 
Query:   65 NPLRKIVYKMFRGEALPDDV--TAVAKLEAGGIDYLGVDFFSELFLGLWHDAHGNEIEAESYVVAACTNTYPK-SDDLWYHTPRMHARIRGW 331
             P+ +  Y+ F+    PD +   A A ++ GG D     F+S+L++GLW++AH    EA   +++A    Y + S D      ++HA  RGW
Sbjct:  186 RPVMRAAYECFQSGTSPDAILAAAAASMQTGGHDA----FYSQLYVGLWYEAHNQPEEARKAILSAIATPYARLSGDYMVSLGKVHAVRRGW 273
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12511.1561.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D8LQ95_ECTSI1.010e-4569.64Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A383VA49_TETOB4.540e-734.78Uncharacterized protein n=1 Tax=Tetradesmus obliqu... [more]
A0A8J4BUZ0_9CHLO4.950e-635.87Uncharacterized protein n=1 Tax=Volvox reticulifer... [more]
A0A2P6TL70_CHLSO5.490e-633.93Putative 2,3-bisphosphoglycerate-independent phosp... [more]
A0A2P6V8C4_9CHLO9.750e-632.26TPR repeat n=1 Tax=Micractinium conductrix TaxID=5... [more]
A0A7J7PRI4_9CHLO1.290e-532.22Uncharacterized protein n=1 Tax=Scenedesmus sp. NR... [more]
A0A8J4EVV0_9CHLO2.250e-534.44Uncharacterized protein n=1 Tax=Volvox africanus T... [more]
A0A835YGN9_9CHLO3.620e-531.52Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A250XAP4_9CHLO5.880e-531.52Uncharacterized protein n=1 Tax=Chlamydomonas eust... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12511contigS-dermatodea_contig12511:860..3466 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-26_005640.1
Exons3
Model size1514
Cds size327
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12511.1561.1prot_S-dermatodea_contig12511.1561.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12511 2028..3447 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924251.2044654-UTR-S-dermatodea_contig12511:859..20271622924251.2044654-UTR-S-dermatodea_contig12511:859..2027Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12511 860..2027 -
1694079125.5845232-UTR-S-dermatodea_contig12511:859..20271694079125.5845232-UTR-S-dermatodea_contig12511:859..2027Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12511 860..2027 -
1622924251.2534652-UTR-S-dermatodea_contig12511:3447..34661622924251.2534652-UTR-S-dermatodea_contig12511:3447..3466Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12511 3448..3466 -
1694079125.6284418-UTR-S-dermatodea_contig12511:3447..34661694079125.6284418-UTR-S-dermatodea_contig12511:3447..3466Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12511 3448..3466 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924251.2212327-CDS-S-dermatodea_contig12511:2027..21471622924251.2212327-CDS-S-dermatodea_contig12511:2027..2147Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12511 2028..2147 -
1694079125.5971594-CDS-S-dermatodea_contig12511:2027..21471694079125.5971594-CDS-S-dermatodea_contig12511:2027..2147Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12511 2028..2147 -
1622924251.233908-CDS-S-dermatodea_contig12511:2709..28441622924251.233908-CDS-S-dermatodea_contig12511:2709..2844Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12511 2710..2844 -
1694079125.608744-CDS-S-dermatodea_contig12511:2709..28441694079125.608744-CDS-S-dermatodea_contig12511:2709..2844Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12511 2710..2844 -
1622924251.245043-CDS-S-dermatodea_contig12511:3375..34471622924251.245043-CDS-S-dermatodea_contig12511:3375..3447Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12511 3376..3447 -
1694079125.6185145-CDS-S-dermatodea_contig12511:3375..34471694079125.6185145-CDS-S-dermatodea_contig12511:3375..3447Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12511 3376..3447 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12511.1561.1

>prot_S-dermatodea_contig12511.1561.1 ID=prot_S-dermatodea_contig12511.1561.1|Name=mRNA_S-dermatodea_contig12511.1561.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=109bp
MQAAAGLPILEIPELNPLRKIVYKMFRGEALPDDVTAVAKLEAGGIDYLG
VDFFSELFLGLWHDAHGNEIEAESYVVAACTNTYPKSDDLWYHTPRMHAR
IRGWTLQE*
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mRNA from alignment at S-dermatodea_contig12511:860..3466-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12511.1561.1 ID=mRNA_S-dermatodea_contig12511.1561.1|Name=mRNA_S-dermatodea_contig12511.1561.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2607bp|location=Sequence derived from alignment at S-dermatodea_contig12511:860..3466- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGAGGCGGGGGCGGATGTTATGCAGGCGGCGGCGGGGTTGCCGATCCTAG
AGATTCCGGAGCTGAACCCGCTACGAAAGATTGTGTATAAGGTGGGTGAG
GTGGCTCTAATTCAAAAAACAAATTGGTGCGCTATTGCGAGTACTGGTAC
AGTGTAGGGTTCGACTTGTTTTTCCCCTGTTGGAATGAGACTTACCTTTC
TCCTAACGGGGAGCAGCGCTGGGCTTCGAGTTGCTTGGCGCTCGAAAGCA
CGCATGTGAATAGGACGCCGGCACGATAGGCTTGTGCACGCTGTGTTGAA
TTTGTTGTTGCTTGGAGTGCGGCACTGGGGCGAACGCGCCGAACACTGAA
AACGCTTCAGTTTTTTACGACCAGTGAGCCAATGGGGCACTACTAACCAG
AGCTTGAGCGCCCAGTGTACGTAAAAACACCACATGCGCGGGGGCTGAGC
AGCCATTGGAGTAGTATCCGACAAGAATCCGTTGGCATTGCTCATGTTGC
ACTGGAACTATACAGATAGGTCAGTTTTGAGTTTTGAGGCATCCCGTCGC
AGCCCATGGTGCCTTCCGCCTCATGCTGATGTGCACATTGTGTTTATATC
ACGTGTGCTCATTTTCTCGCAGATGTTTCGCGGGGAGGCTCTCCCAGATG
ACGTGACGGCTGTCGCCAAGTTGGAGGCAGGGGGGATCGACTACCTTGGC
GTCGATTTTTTCTCCGAGTTGTTCTTGGGCCTCTGGCACGATGCGCATGG
GAACGAGGTGCGATCACTACGGTTTTGAAGTGATGTAATAATGTAGACCG
ATCGGGTATGACCGATTGGGTTTGGTGCTCAGTAAATCGTCGCTGTCACT
CGCGTGCTACTATAGTTGCCGAGTGTGCCGTAGAAAGAACCTGCCAGAGA
CAATCCAGATTCTCGATTTGGAGATACTGCGGAGGGTCTCGGTTGTGGTG
TTCAAGCAAACCCTCGGCATGTCAAAGATGGGCAGAGGCACCTGTTGAAC
CCCTGCAACCGACGAGAAGACAACGAACGACACGATACTGTAGAAATCAC
TCTCCAAAACAGAGTGCAAAAACTATGTTGCGCTACTGTACTATTATAGA
AAGCGCCATGAGCTCTTCCGTTGTTTTTTCTCTAAGAGCGAGAGGGTGCT
ATGGCGTAGTTCCGCACCGCAGGAAGATGCTTCAGTCGTCTCGCCCCCAC
TTCTTGAGTTGCGCTACACACGACTATTTAGAAGTCCAATAAGTCGCTGG
GTGTTGTCTCGATCGTCTACCGGCATATTATTTAATCTATCTCCTCACTC
GTGTATCCCCCCTTTGCAGATCGAGGCCGAGTCATACGTGGTGGCGGCTT
GTACCAACACGTACCCCAAGTCGGACGACCTCTGGTATCATACTCCAAGA
ATGCACGCCAGGATTCGAGGGTGGACGCTCCAGGAGTAGCGCTGGTCTAC
AAGTAGCGGTGTACGCTTACCGCCCCAGCCTTCTCTGCATCTTGACAAAC
GACCCCCCTTATCGTAAGCACGATCGCCGACGGGTTCGAATTTTCTCGTC
GGGGCAATTCAGCAGCGGTCGGTAGAGGTGGGTAGTGTCTTCGCGATGAC
CCCCCCCACGATGCTCCTATGGCAAGCACGGCCTGGGTCCGCGAGCTCGG
CACGGTGGAACGGAAGTTCGGGCGTATAGGCCTCGCGGCGAGTGTTGGCG
GTGTGCTGGTAGCCCATGATGAATGTCGACGTAGGGCTCGATCCCGGCCA
CTGGTTCCTCGCGGGTAGCCGGGCCGTCCACCGATCCCGCCTTCTGCAAA
CCTAGCGTAGCGGTAGCGGCGGGCGCAACCGCACCTTGCGTCGATTTGCT
TCACACCTTGCATTCGTTGCGCTCGCGCTTGTCGTGTTCCGGCAGAGAGC
GCGTCCCGGTCATTTTCGCTCCCGGATTGAAAAGTGCGTTGCTGTAAATC
GTGCTGGGTTATACGATCGAGTTACCGTGTTGACCAAGCTCGCTTGCGTT
GTTTATGGAAAAATGTCTTGCGCGTGGTGCATCTGCCATCATTTCCCCAG
GCTTGTAAGTGAATTCCAAGTGGTATTTGCCTGATGGCTTAGCGAATTTA
TCAGGTTTATAGCCCACGAAGCCAGCTCTCGACACGACTGGTTGGCGAGG
TCGAGCGAGTGCTCTAGGAGAGTGGATGTTTGTTTCCACGATGTCGCGGG
TGGTTCCATGCCTCCGCAGCGAGCCTTCTCGGCGAGAGCAAGTCGGAGCC
GCCTCCGTGTTGTTGCGTGTGAACAAACGTGCAAACGTGTTTCGTTGGCT
TACGGGCGCGCAAGCTACGACTCGCTCACCCGAGCAGCAGAACTTTGAAA
CGCCGATTTTGGATCAACCACCGACTGACGTTCCCCGAATATTTATTTTA
TTTTGCTTTATACGTGGGAGTGTTTTCGGTTTAAAAAATGTTAACGCTTG
TTTTACGTTGGTTTGCCTTGATTCATTGATCTTGTGACAATGGCTGAATT
TCTTGTTGTATATTTTAAGTGAAAATATCATCATCAGCTCTGGATGTCCG
AGTCCTACCGAAATAAACCTGGAGTCAGCCGCGCCCTCCTTCAAAGTTCA
CTTGTAT
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Coding sequence (CDS) from alignment at S-dermatodea_contig12511:860..3466-

>mRNA_S-dermatodea_contig12511.1561.1 ID=mRNA_S-dermatodea_contig12511.1561.1|Name=mRNA_S-dermatodea_contig12511.1561.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at S-dermatodea_contig12511:860..3466- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCAGGCGGCGGCGGGGTTGCCGATCCTAGAGATTCCGGAGCTGAACCC
GCTACGAAAGATTGTGTATAAGATGCAGGCGGCGGCGGGGTTGCCGATCC
TAGAGATTCCGGAGCTGAACCCGCTACGAAAGATTGTGTATAAGATGTTT
CGCGGGGAGGCTCTCCCAGATGACGTGACGGCTGTCGCCAAGTTGGAGGC
AGGGGGGATCGACTACCTTGGCGTCGATTTTTTCTCCGAGTTGTTCTTGG
GCCTCTGGCACGATGCGCATGGGAACGAGATGTTTCGCGGGGAGGCTCTC
CCAGATGACGTGACGGCTGTCGCCAAGTTGGAGGCAGGGGGGATCGACTA
CCTTGGCGTCGATTTTTTCTCCGAGTTGTTCTTGGGCCTCTGGCACGATG
CGCATGGGAACGAGATCGAGGCCGAGTCATACGTGGTGGCGGCTTGTACC
AACACGTACCCCAAGTCGGACGACCTCTGGTATCATACTCCAAGAATGCA
CGCCAGGATTCGAGGGTGGACGCTCCAGGAGTAGATCGAGGCCGAGTCAT
ACGTGGTGGCGGCTTGTACCAACACGTACCCCAAGTCGGACGACCTCTGG
TATCATACTCCAAGAATGCACGCCAGGATTCGAGGGTGGACGCTCCAGGA
GTAG
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