mRNA_S-dermatodea_contig12510.1560.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig12510.1560.1 vs. uniprot
Match: A0A6H5LKA3_9PHAE (U-box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LKA3_9PHAE) HSP 1 Score: 149 bits (375), Expect = 8.560e-40 Identity = 64/87 (73.56%), Postives = 74/87 (85.06%), Query Frame = 1
Query: 7 QEFLCSINGHMMKQPTRSPHGHAFEFSTILLWLESRGQVCPFTGKPLRNEDLMPDEELRTRIMRWHIQKTSIHVGRGALEGDDIYDF 267
+EFLC+INGHMMK P RSPHGH FE STILLWLESRG+VCPF+GKPL E+L+P+EELRTRIMRW I+KT + + R LE DDIYDF
Sbjct: 738 KEFLCAINGHMMKLPVRSPHGHVFELSTILLWLESRGRVCPFSGKPLSKEELVPEEELRTRIMRWRIEKTDVGIDRRGLEDDDIYDF 824
BLAST of mRNA_S-dermatodea_contig12510.1560.1 vs. uniprot
Match: A0A7S4DAJ1_HETAK (Hypothetical protein n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAJ1_HETAK) HSP 1 Score: 121 bits (304), Expect = 2.790e-33 Identity = 56/93 (60.22%), Postives = 69/93 (74.19%), Query Frame = 1
Query: 7 QEFLCSINGHMMKQPTRSPHGHAFEFSTILLWLESRGQVCPFTGKPLRNEDLMPDEELRTRIMRWHIQKTSIH-----VGRGALEGDD-IYDF 267
+EF C+INGH+MK+P +SP GH FE STI LWL +G VCP TG+PL EDL PDEEL+TRIMRWHIQ+T++ G G+ + DD IYDF
Sbjct: 74 REFTCAINGHLMKEPVKSPGGHVFEKSTITLWLRMQGSVCPITGQPLVQEDLEPDEELKTRIMRWHIQRTTMQQEGPVAGFGSGDDDDDIYDF 166
BLAST of mRNA_S-dermatodea_contig12510.1560.1 vs. uniprot
Match: A0A835Z5Y1_9STRA (U-box domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5Y1_9STRA) HSP 1 Score: 124 bits (310), Expect = 5.280e-31 Identity = 54/86 (62.79%), Postives = 68/86 (79.07%), Query Frame = 1
Query: 10 EFLCSINGHMMKQPTRSPHGHAFEFSTILLWLESRGQVCPFTGKPLRNEDLMPDEELRTRIMRWHIQKTSIHVGRGALEGDDIYDF 267
+FLC+INGH+M+ P RSPHGHAFE +TILLWLE+RG+VCP TG+ L +L D+ L TRIMRWHI++TS AL+GDD+YDF
Sbjct: 645 DFLCAINGHIMRAPVRSPHGHAFERATILLWLETRGRVCPLTGRTLAPSELRADDALHTRIMRWHIERTS----GAALDGDDMYDF 726
BLAST of mRNA_S-dermatodea_contig12510.1560.1 vs. uniprot
Match: A0A7S2CIQ0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CIQ0_9STRA) HSP 1 Score: 113 bits (282), Expect = 3.850e-30 Identity = 53/87 (60.92%), Postives = 64/87 (73.56%), Query Frame = 1
Query: 10 EFLCSINGHMMKQPTRSPHGHAFEFSTILLWLESRGQVCPFTGKPLRNEDLMPDEELRTRIMRWHIQKTSIHVGRGALE-GDDIYDF 267
EF C INGH+MK P R+P+GH FE +TILLWLE+RG VCP TG L EDL+PD+ELR++IMR HI + GA E GDD+YDF
Sbjct: 65 EFACEINGHLMKDPVRAPNGHVFEKATILLWLETRGSVCPLTGDALCAEDLVPDKELRSKIMRHHISH-AFKQDNGASELGDDLYDF 150
BLAST of mRNA_S-dermatodea_contig12510.1560.1 vs. uniprot
Match: A0A7S2FHG6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FHG6_9STRA) HSP 1 Score: 107 bits (267), Expect = 3.380e-28 Identity = 50/87 (57.47%), Postives = 63/87 (72.41%), Query Frame = 1
Query: 7 QEFLCSINGHMMKQPTRSPHGHAFEFSTILLWLESRGQVCPFTGKPLRNEDLMPDEELRTRIMRWHIQKTSIHVGRGALEGDDIYDF 267
+EF+C+INGHMMK+P RS GH FE STI LWLES GQVCP T + L + L PD+ELR+RI+R+ IQK+S E +D+YDF
Sbjct: 42 KEFVCAINGHMMKEPVRSAFGHVFEKSTIELWLESNGQVCPITHETLTADQLTPDDELRSRIIRFQIQKSS-----APAEEEDLYDF 123
BLAST of mRNA_S-dermatodea_contig12510.1560.1 vs. uniprot
Match: A0A7S2BNU3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BNU3_9STRA) HSP 1 Score: 105 bits (261), Expect = 1.140e-24 Identity = 43/69 (62.32%), Postives = 55/69 (79.71%), Query Frame = 1
Query: 7 QEFLCSINGHMMKQPTRSPHGHAFEFSTILLWLESRGQVCPFTGKPLRNEDLMPDEELRTRIMRWHIQK 213
+EF C INGH++KQP R+P GH FE++TI LWLE+RG +CP TGK L +DL PD++LRTRIMR HI +
Sbjct: 335 KEFTCEINGHLLKQPMRTPTGHVFEYATIKLWLETRGSICPLTGKELTMKDLTPDDDLRTRIMRHHINR 403
BLAST of mRNA_S-dermatodea_contig12510.1560.1 vs. uniprot
Match: A0A7S3HBC0_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HBC0_9STRA) HSP 1 Score: 102 bits (253), Expect = 4.940e-24 Identity = 45/87 (51.72%), Postives = 62/87 (71.26%), Query Frame = 1
Query: 7 QEFLCSINGHMMKQPTRSPHGHAFEFSTILLWLESRGQVCPFTGKPLRNEDLMPDEELRTRIMRWHIQKTSIHVGRGALEGDDIYDF 267
+EFLC+INGH+MK+P ++P G FE +TI LWL +RG VCP T L DL P+++LR RI R+HIQ+T++ R + DD+YDF
Sbjct: 255 KEFLCAINGHVMKEPVKAPSGLVFEQATIELWLNTRGAVCPITNTHLERGDLQPEDDLRNRIKRYHIQQTAMR--RTNVADDDLYDF 339
BLAST of mRNA_S-dermatodea_contig12510.1560.1 vs. uniprot
Match: F0YBB2_AURAN (U-box domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YBB2_AURAN) HSP 1 Score: 102 bits (253), Expect = 2.830e-23 Identity = 48/89 (53.93%), Postives = 60/89 (67.42%), Query Frame = 1
Query: 10 EFLCSINGHMMKQPTRSPHGHAFEFSTILLWLESRGQVCPFTGKPLRNEDLMPDEELRTRIMRWHI------QKTSI--HVGRGALEGD 252
EF C+INGH++K+P RSP+GH FE STI LWLE+RG VCP TGK L EDL D L TR+++WHI +TS+ GR L G+
Sbjct: 688 EFACAINGHLLKEPARSPYGHVFEKSTITLWLETRGSVCPITGKELNVEDLEDDAALHTRLIKWHIGRMQQTMETSVADDQGRAPLLGE 776
BLAST of mRNA_S-dermatodea_contig12510.1560.1 vs. uniprot
Match: A0A7S1TRP6_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TRP6_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 4.560e-22 Identity = 44/87 (50.57%), Postives = 55/87 (63.22%), Query Frame = 1
Query: 7 QEFLCSINGHMMKQPTRSPHGHAFEFSTILLWLESRGQVCPFTGKPLRNEDLMPDEELRTRIMRWHIQKTSIHVGRGALEGDDIYDF 267
+E+ C+INGHMMK P R+P G FE TI+LWL++RG +CP TG PL +DL D +LR IMRW I H E +D YDF
Sbjct: 729 REYACAINGHMMKDPVRTPAGKVFERETIMLWLQTRGSICPITGDPLTPDDLSADIDLRQNIMRWQISNLLHH--NKESEAEDPYDF 813
BLAST of mRNA_S-dermatodea_contig12510.1560.1 vs. uniprot
Match: A0A7R9U4E6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U4E6_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 1.010e-21 Identity = 43/86 (50.00%), Postives = 57/86 (66.28%), Query Frame = 1
Query: 10 EFLCSINGHMMKQPTRSPHGHAFEFSTILLWLESRGQVCPFTGKPLRNEDLMPDEELRTRIMRWHIQKTSIHVGRGALEGDDIYDF 267
EF CSINGH+++ P +SP GH FE TILLWL++RG VCP +G L EDL D +LR +I+RW I +++ + DD YDF
Sbjct: 151 EFACSINGHLLRAPVKSPGGHVFERETILLWLQTRGFVCPISGDRLTPEDLSEDLDLRQQIVRWQI--SNLLTSNQQSDLDDPYDF 234 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12510.1560.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig12510.1560.1 >prot_S-dermatodea_contig12510.1560.1 ID=prot_S-dermatodea_contig12510.1560.1|Name=mRNA_S-dermatodea_contig12510.1560.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=90bp FNQEFLCSINGHMMKQPTRSPHGHAFEFSTILLWLESRGQVCPFTGKPLRback to top mRNA from alignment at S-dermatodea_contig12510:600..1457+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig12510.1560.1 ID=mRNA_S-dermatodea_contig12510.1560.1|Name=mRNA_S-dermatodea_contig12510.1560.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=858bp|location=Sequence derived from alignment at S-dermatodea_contig12510:600..1457+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig12510:600..1457+ >mRNA_S-dermatodea_contig12510.1560.1 ID=mRNA_S-dermatodea_contig12510.1560.1|Name=mRNA_S-dermatodea_contig12510.1560.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=540bp|location=Sequence derived from alignment at S-dermatodea_contig12510:600..1457+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |