mRNA_S-dermatodea_contig12510.1560.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12510.1560.1
Unique NamemRNA_S-dermatodea_contig12510.1560.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig12510.1560.1 vs. uniprot
Match: A0A6H5LKA3_9PHAE (U-box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LKA3_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 8.560e-40
Identity = 64/87 (73.56%), Postives = 74/87 (85.06%), Query Frame = 1
Query:    7 QEFLCSINGHMMKQPTRSPHGHAFEFSTILLWLESRGQVCPFTGKPLRNEDLMPDEELRTRIMRWHIQKTSIHVGRGALEGDDIYDF 267
            +EFLC+INGHMMK P RSPHGH FE STILLWLESRG+VCPF+GKPL  E+L+P+EELRTRIMRW I+KT + + R  LE DDIYDF
Sbjct:  738 KEFLCAINGHMMKLPVRSPHGHVFELSTILLWLESRGRVCPFSGKPLSKEELVPEEELRTRIMRWRIEKTDVGIDRRGLEDDDIYDF 824          
BLAST of mRNA_S-dermatodea_contig12510.1560.1 vs. uniprot
Match: A0A7S4DAJ1_HETAK (Hypothetical protein n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAJ1_HETAK)

HSP 1 Score: 121 bits (304), Expect = 2.790e-33
Identity = 56/93 (60.22%), Postives = 69/93 (74.19%), Query Frame = 1
Query:    7 QEFLCSINGHMMKQPTRSPHGHAFEFSTILLWLESRGQVCPFTGKPLRNEDLMPDEELRTRIMRWHIQKTSIH-----VGRGALEGDD-IYDF 267
            +EF C+INGH+MK+P +SP GH FE STI LWL  +G VCP TG+PL  EDL PDEEL+TRIMRWHIQ+T++       G G+ + DD IYDF
Sbjct:   74 REFTCAINGHLMKEPVKSPGGHVFEKSTITLWLRMQGSVCPITGQPLVQEDLEPDEELKTRIMRWHIQRTTMQQEGPVAGFGSGDDDDDIYDF 166          
BLAST of mRNA_S-dermatodea_contig12510.1560.1 vs. uniprot
Match: A0A835Z5Y1_9STRA (U-box domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5Y1_9STRA)

HSP 1 Score: 124 bits (310), Expect = 5.280e-31
Identity = 54/86 (62.79%), Postives = 68/86 (79.07%), Query Frame = 1
Query:   10 EFLCSINGHMMKQPTRSPHGHAFEFSTILLWLESRGQVCPFTGKPLRNEDLMPDEELRTRIMRWHIQKTSIHVGRGALEGDDIYDF 267
            +FLC+INGH+M+ P RSPHGHAFE +TILLWLE+RG+VCP TG+ L   +L  D+ L TRIMRWHI++TS      AL+GDD+YDF
Sbjct:  645 DFLCAINGHIMRAPVRSPHGHAFERATILLWLETRGRVCPLTGRTLAPSELRADDALHTRIMRWHIERTS----GAALDGDDMYDF 726          
BLAST of mRNA_S-dermatodea_contig12510.1560.1 vs. uniprot
Match: A0A7S2CIQ0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CIQ0_9STRA)

HSP 1 Score: 113 bits (282), Expect = 3.850e-30
Identity = 53/87 (60.92%), Postives = 64/87 (73.56%), Query Frame = 1
Query:   10 EFLCSINGHMMKQPTRSPHGHAFEFSTILLWLESRGQVCPFTGKPLRNEDLMPDEELRTRIMRWHIQKTSIHVGRGALE-GDDIYDF 267
            EF C INGH+MK P R+P+GH FE +TILLWLE+RG VCP TG  L  EDL+PD+ELR++IMR HI   +     GA E GDD+YDF
Sbjct:   65 EFACEINGHLMKDPVRAPNGHVFEKATILLWLETRGSVCPLTGDALCAEDLVPDKELRSKIMRHHISH-AFKQDNGASELGDDLYDF 150          
BLAST of mRNA_S-dermatodea_contig12510.1560.1 vs. uniprot
Match: A0A7S2FHG6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FHG6_9STRA)

HSP 1 Score: 107 bits (267), Expect = 3.380e-28
Identity = 50/87 (57.47%), Postives = 63/87 (72.41%), Query Frame = 1
Query:    7 QEFLCSINGHMMKQPTRSPHGHAFEFSTILLWLESRGQVCPFTGKPLRNEDLMPDEELRTRIMRWHIQKTSIHVGRGALEGDDIYDF 267
            +EF+C+INGHMMK+P RS  GH FE STI LWLES GQVCP T + L  + L PD+ELR+RI+R+ IQK+S        E +D+YDF
Sbjct:   42 KEFVCAINGHMMKEPVRSAFGHVFEKSTIELWLESNGQVCPITHETLTADQLTPDDELRSRIIRFQIQKSS-----APAEEEDLYDF 123          
BLAST of mRNA_S-dermatodea_contig12510.1560.1 vs. uniprot
Match: A0A7S2BNU3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BNU3_9STRA)

HSP 1 Score: 105 bits (261), Expect = 1.140e-24
Identity = 43/69 (62.32%), Postives = 55/69 (79.71%), Query Frame = 1
Query:    7 QEFLCSINGHMMKQPTRSPHGHAFEFSTILLWLESRGQVCPFTGKPLRNEDLMPDEELRTRIMRWHIQK 213
            +EF C INGH++KQP R+P GH FE++TI LWLE+RG +CP TGK L  +DL PD++LRTRIMR HI +
Sbjct:  335 KEFTCEINGHLLKQPMRTPTGHVFEYATIKLWLETRGSICPLTGKELTMKDLTPDDDLRTRIMRHHINR 403          
BLAST of mRNA_S-dermatodea_contig12510.1560.1 vs. uniprot
Match: A0A7S3HBC0_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HBC0_9STRA)

HSP 1 Score: 102 bits (253), Expect = 4.940e-24
Identity = 45/87 (51.72%), Postives = 62/87 (71.26%), Query Frame = 1
Query:    7 QEFLCSINGHMMKQPTRSPHGHAFEFSTILLWLESRGQVCPFTGKPLRNEDLMPDEELRTRIMRWHIQKTSIHVGRGALEGDDIYDF 267
            +EFLC+INGH+MK+P ++P G  FE +TI LWL +RG VCP T   L   DL P+++LR RI R+HIQ+T++   R  +  DD+YDF
Sbjct:  255 KEFLCAINGHVMKEPVKAPSGLVFEQATIELWLNTRGAVCPITNTHLERGDLQPEDDLRNRIKRYHIQQTAMR--RTNVADDDLYDF 339          
BLAST of mRNA_S-dermatodea_contig12510.1560.1 vs. uniprot
Match: F0YBB2_AURAN (U-box domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YBB2_AURAN)

HSP 1 Score: 102 bits (253), Expect = 2.830e-23
Identity = 48/89 (53.93%), Postives = 60/89 (67.42%), Query Frame = 1
Query:   10 EFLCSINGHMMKQPTRSPHGHAFEFSTILLWLESRGQVCPFTGKPLRNEDLMPDEELRTRIMRWHI------QKTSI--HVGRGALEGD 252
            EF C+INGH++K+P RSP+GH FE STI LWLE+RG VCP TGK L  EDL  D  L TR+++WHI       +TS+    GR  L G+
Sbjct:  688 EFACAINGHLLKEPARSPYGHVFEKSTITLWLETRGSVCPITGKELNVEDLEDDAALHTRLIKWHIGRMQQTMETSVADDQGRAPLLGE 776          
BLAST of mRNA_S-dermatodea_contig12510.1560.1 vs. uniprot
Match: A0A7S1TRP6_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TRP6_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 4.560e-22
Identity = 44/87 (50.57%), Postives = 55/87 (63.22%), Query Frame = 1
Query:    7 QEFLCSINGHMMKQPTRSPHGHAFEFSTILLWLESRGQVCPFTGKPLRNEDLMPDEELRTRIMRWHIQKTSIHVGRGALEGDDIYDF 267
            +E+ C+INGHMMK P R+P G  FE  TI+LWL++RG +CP TG PL  +DL  D +LR  IMRW I     H      E +D YDF
Sbjct:  729 REYACAINGHMMKDPVRTPAGKVFERETIMLWLQTRGSICPITGDPLTPDDLSADIDLRQNIMRWQISNLLHH--NKESEAEDPYDF 813          
BLAST of mRNA_S-dermatodea_contig12510.1560.1 vs. uniprot
Match: A0A7R9U4E6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U4E6_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.010e-21
Identity = 43/86 (50.00%), Postives = 57/86 (66.28%), Query Frame = 1
Query:   10 EFLCSINGHMMKQPTRSPHGHAFEFSTILLWLESRGQVCPFTGKPLRNEDLMPDEELRTRIMRWHIQKTSIHVGRGALEGDDIYDF 267
            EF CSINGH+++ P +SP GH FE  TILLWL++RG VCP +G  L  EDL  D +LR +I+RW I  +++       + DD YDF
Sbjct:  151 EFACSINGHLLRAPVKSPGGHVFERETILLWLQTRGFVCPISGDRLTPEDLSEDLDLRQQIVRWQI--SNLLTSNQQSDLDDPYDF 234          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12510.1560.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5LKA3_9PHAE8.560e-4073.56U-box domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A7S4DAJ1_HETAK2.790e-3360.22Hypothetical protein n=3 Tax=Heterosigma akashiwo ... [more]
A0A835Z5Y1_9STRA5.280e-3162.79U-box domain-containing protein n=1 Tax=Tribonema ... [more]
A0A7S2CIQ0_9STRA3.850e-3060.92Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2FHG6_9STRA3.380e-2857.47Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2BNU3_9STRA1.140e-2462.32Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3HBC0_9STRA4.940e-2451.72Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
F0YBB2_AURAN2.830e-2353.93U-box domain-containing protein n=1 Tax=Aureococcu... [more]
A0A7S1TRP6_9STRA4.560e-2250.57Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7R9U4E6_9STRA1.010e-2150.00Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12510contigS-dermatodea_contig12510:600..1457 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.1
Seed ortholog evalue1.4e-19
Seed eggNOG ortholog44056.XP_009037706.1
EggNOG OGs28N4Y@1,2QUQ3@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size270
Cds size270
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924251.1586192-CDS-S-dermatodea_contig12510:599..7531622924251.1586192-CDS-S-dermatodea_contig12510:599..753Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12510 600..753 +
1694079125.5502934-CDS-S-dermatodea_contig12510:599..7531694079125.5502934-CDS-S-dermatodea_contig12510:599..753Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12510 600..753 +
1622924251.17152-CDS-S-dermatodea_contig12510:1341..14571622924251.17152-CDS-S-dermatodea_contig12510:1341..1457Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12510 1342..1457 +
1694079125.5730374-CDS-S-dermatodea_contig12510:1341..14571694079125.5730374-CDS-S-dermatodea_contig12510:1341..1457Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12510 1342..1457 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12510.1560.1prot_S-dermatodea_contig12510.1560.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12510 600..1457 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12510.1560.1

>prot_S-dermatodea_contig12510.1560.1 ID=prot_S-dermatodea_contig12510.1560.1|Name=mRNA_S-dermatodea_contig12510.1560.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=90bp
FNQEFLCSINGHMMKQPTRSPHGHAFEFSTILLWLESRGQVCPFTGKPLR
NEDLMPDEELRTRIMRWHIQKTSIHVGRGALEGDDIYDF*
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mRNA from alignment at S-dermatodea_contig12510:600..1457+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12510.1560.1 ID=mRNA_S-dermatodea_contig12510.1560.1|Name=mRNA_S-dermatodea_contig12510.1560.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=858bp|location=Sequence derived from alignment at S-dermatodea_contig12510:600..1457+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TTCAATCAGGAGTTCTTGTGCTCAATCAACGGGCACATGATGAAGCAGCC CACTCGGTCGCCGCATGGACACGCCTTCGAGTTTTCGACCATTTTGCTGT GGCTCGAATCCAGGGGACAAGTATGCCCCTTCACCGGAAAGCCGTTACGT AACGGTAAGACTCCCTTGCTCGACGTACGTTCGTACATCTCGTCTAGTAT CCATGGTCTTTTGGATATAGTTCTACGGACCTTAGCGGGTGGACGTCCTT AAGCAGTCTTGCATCGCAGAAAGGACCAAGGCGTCACGCACAAAGAGGTA TACCTAAAATGCACTTGCAGATACAGCATCGGCTGACGAGGTGACTACCT ATGAACGCGGCAGCAAATAAACGCTAACGATCGCGTTGCGTCGGTTCTCT CACTTAGGTTTCTCCGGGCCTGTCTTCGGCCCGTCTCCTGCCTGAACGGG ATACATGGGCCGATGTAGTTTCGTCCCGGGCTTTTGCCTGAGCCCCTCAA GGCAGTAGTTTTAACTTGTGGAATGACCGTCCGTGGTGTACCACAAAAAC GCGTCGAAACCCCACGCCCCGTCACTTTTCACCGTTCGGTCGTCGTGTCG AGAGGCAAATGGCGCGGCAACATACAAGCGTACCTGACAGGAATGAATCG AAAGCCCTAGTCCTGAGACCTTATCTTATCCCTCGCGATAGCCCTTAAAG CAAACCCTGCACCTTGCCTCTCTCTACCCCGATTCAACCCAGAGGACTTG ATGCCCGACGAAGAGCTGAGGACGCGCATCATGCGGTGGCACATACAAAA AACGAGCATCCACGTGGGGCGAGGGGCGCTAGAGGGGGACGATATTTACG ATTTTTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig12510:600..1457+

>mRNA_S-dermatodea_contig12510.1560.1 ID=mRNA_S-dermatodea_contig12510.1560.1|Name=mRNA_S-dermatodea_contig12510.1560.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=540bp|location=Sequence derived from alignment at S-dermatodea_contig12510:600..1457+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TTCAATCAGGAGTTCTTGTGCTCAATCAACGGGCACATGATGAAGCAGCC
CACTCGGTCGCCGCATGGACACGCCTTCGAGTTTTCGACCATTTTGCTGT
GGCTCGAATCCAGGGGACAAGTATGCCCCTTCACCGGAAAGCCGTTACGT
AACGTTCAATCAGGAGTTCTTGTGCTCAATCAACGGGCACATGATGAAGC
AGCCCACTCGGTCGCCGCATGGACACGCCTTCGAGTTTTCGACCATTTTG
CTGTGGCTCGAATCCAGGGGACAAGTATGCCCCTTCACCGGAAAGCCGTT
ACGTAACGAGGACTTGATGCCCGACGAAGAGCTGAGGACGCGCATCATGC
GGTGGCACATACAAAAAACGAGCATCCACGTGGGGCGAGGGGCGCTAGAG
GGGGACGATATTTACGATTTTTGAAGGACTTGATGCCCGACGAAGAGCTG
AGGACGCGCATCATGCGGTGGCACATACAAAAAACGAGCATCCACGTGGG
GCGAGGGGCGCTAGAGGGGGACGATATTTACGATTTTTGA
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