mRNA_S-dermatodea_contig12509.1558.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12509.1558.1
Unique NamemRNA_S-dermatodea_contig12509.1558.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12509.1558.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12509contigS-dermatodea_contig12509:6166..6803 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size638
Cds size393
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12509.1558.1prot_S-dermatodea_contig12509.1558.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12509 6186..6578 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924250.877276-UTR-S-dermatodea_contig12509:6165..61851622924250.877276-UTR-S-dermatodea_contig12509:6165..6185Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12509 6166..6185 +
1694079125.3534899-UTR-S-dermatodea_contig12509:6165..61851694079125.3534899-UTR-S-dermatodea_contig12509:6165..6185Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12509 6166..6185 +
1622924250.8995876-UTR-S-dermatodea_contig12509:6578..68031622924250.8995876-UTR-S-dermatodea_contig12509:6578..6803Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12509 6579..6803 +
1694079125.3743434-UTR-S-dermatodea_contig12509:6578..68031694079125.3743434-UTR-S-dermatodea_contig12509:6578..6803Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12509 6579..6803 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924250.88623-CDS-S-dermatodea_contig12509:6185..65781622924250.88623-CDS-S-dermatodea_contig12509:6185..6578Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12509 6186..6578 +
1694079125.365632-CDS-S-dermatodea_contig12509:6185..65781694079125.365632-CDS-S-dermatodea_contig12509:6185..6578Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12509 6186..6578 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12509.1558.1

>prot_S-dermatodea_contig12509.1558.1 ID=prot_S-dermatodea_contig12509.1558.1|Name=mRNA_S-dermatodea_contig12509.1558.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=131bp
MIGAFGGKKKRGWCPNEGGRILGVGKKTLALVFSLVFESKVLERGPLPRG
SEKHVASPPPPGPPARSCPKLLVDTDGVMGIARNKKQNRVAVLKGRMKNQ
ARGALHYSCRGSKVHYYFEFFRCVVLFCCY*
back to top

mRNA from alignment at S-dermatodea_contig12509:6166..6803+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12509.1558.1 ID=mRNA_S-dermatodea_contig12509.1558.1|Name=mRNA_S-dermatodea_contig12509.1558.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=638bp|location=Sequence derived from alignment at S-dermatodea_contig12509:6166..6803+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATTCAGTTTGTGCATGTGCTATGATAGGGGCTTTCGGGGGCAAAAAAAAA
CGCGGATGGTGTCCAAATGAGGGGGGAAGAATTTTGGGTGTAGGAAAAAA
AACTCTGGCCCTTGTTTTTTCGCTCGTTTTTGAATCAAAAGTACTCGAGC
GAGGGCCCCTCCCCAGGGGCTCCGAAAAACATGTGGCGAGCCCTCCCCCG
CCGGGCCCCCCCGCTCGCTCGTGTCCCAAACTGCTTGTGGACACGGACGG
TGTGATGGGAATCGCCAGGAACAAAAAACAAAATAGGGTCGCGGTATTAA
AGGGAAGGATGAAAAACCAAGCTCGTGGCGCTCTTCATTACTCTTGCAGG
GGATCAAAAGTACACTACTATTTCGAGTTTTTTCGGTGTGTTGTGTTGTT
TTGTTGTTATTAAACAAAAAGGTGATGTTTATTTACTCTACATTATAATA
TAGGTGTATCGAGGTATTTGTATTTTTCACCCATTTATCAGTATAAGGTG
GAACGGACGGGGTAGGTGTCGGGATGTGATGGGGGCAGAATTTTTGCGTG
TACTACAAGATGCGTATGTTAGGGTAGGCGATGGGCGATGTCTGTCTGCC
GAAGAGTGTTCGGGGAATTTCCTGGTGCGATCGGGGGG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig12509:6166..6803+

>mRNA_S-dermatodea_contig12509.1558.1 ID=mRNA_S-dermatodea_contig12509.1558.1|Name=mRNA_S-dermatodea_contig12509.1558.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=786bp|location=Sequence derived from alignment at S-dermatodea_contig12509:6166..6803+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATAGGGGCTTTCGGGGGCAAAAAAAAACGCGGATGGTGTCCAAATGA
GGGGGGAAGAATTTTGGGTGTAGGAAAAAAAACTCTGGCCCTTGTTTTTT
CGCTCGTTTTTGAATCAAAAGTACTCGAGCGAGGGCCCCTCCCCAGGGGC
TCCGAAAAACATGTGGCGAGCCCTCCCCCGCCGGGCCCCCCCGCTCGCTC
GTGTCCCAAACTGCTTGTGGACACGGACGGTGTGATGGGAATCGCCAGGA
ACAAAAAACAAAATAGGGTCGCGGTATTAAAGGGAAGGATGAAAAACCAA
GCTCGTGGCGCTCTTCATTACTCTTGCAGGGGATCAAAAGTACACTACTA
TTTCGAGTTTTTTCGGTGTGTTGTGTTGTTTTGTTGTTATTAAATGATAG
GGGCTTTCGGGGGCAAAAAAAAACGCGGATGGTGTCCAAATGAGGGGGGA
AGAATTTTGGGTGTAGGAAAAAAAACTCTGGCCCTTGTTTTTTCGCTCGT
TTTTGAATCAAAAGTACTCGAGCGAGGGCCCCTCCCCAGGGGCTCCGAAA
AACATGTGGCGAGCCCTCCCCCGCCGGGCCCCCCCGCTCGCTCGTGTCCC
AAACTGCTTGTGGACACGGACGGTGTGATGGGAATCGCCAGGAACAAAAA
ACAAAATAGGGTCGCGGTATTAAAGGGAAGGATGAAAAACCAAGCTCGTG
GCGCTCTTCATTACTCTTGCAGGGGATCAAAAGTACACTACTATTTCGAG
TTTTTTCGGTGTGTTGTGTTGTTTTGTTGTTATTAA
back to top