mRNA_S-dermatodea_contig12507.1556.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12507.1556.1
Unique NamemRNA_S-dermatodea_contig12507.1556.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12507.1556.1 vs. uniprot
Match: D7G220_ECTSI (FYR N-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G220_ECTSI)

HSP 1 Score: 53.1 bits (126), Expect = 1.100e-5
Identity = 27/31 (87.10%), Postives = 28/31 (90.32%), Query Frame = 3 
Query:  261 ELRRETAHLLHARAGARSRVDANSTAIFDIT 353
            ELRRETA LLHARAGAR+RVDANS  IFDIT
Sbjct:  750 ELRRETAKLLHARAGARARVDANSATIFDIT 780
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12507.1556.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G220_ECTSI1.100e-587.10FYR N-terminal domain-containing protein n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12507contigS-dermatodea_contig12507:3235..7013 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size355
Cds size330
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12507.1556.1prot_S-dermatodea_contig12507.1556.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12507 3258..7013 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924250.8136728-UTR-S-dermatodea_contig12507:3234..32571622924250.8136728-UTR-S-dermatodea_contig12507:3234..3257Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12507 3235..3257 +
1694079125.3146489-UTR-S-dermatodea_contig12507:3234..32571694079125.3146489-UTR-S-dermatodea_contig12507:3234..3257Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12507 3235..3257 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924250.8220565-CDS-S-dermatodea_contig12507:3257..33711622924250.8220565-CDS-S-dermatodea_contig12507:3257..3371Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12507 3258..3371 +
1694079125.3227897-CDS-S-dermatodea_contig12507:3257..33711694079125.3227897-CDS-S-dermatodea_contig12507:3257..3371Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12507 3258..3371 +
1622924250.8307168-CDS-S-dermatodea_contig12507:4155..42571622924250.8307168-CDS-S-dermatodea_contig12507:4155..4257Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12507 4156..4257 +
1694079125.331562-CDS-S-dermatodea_contig12507:4155..42571694079125.331562-CDS-S-dermatodea_contig12507:4155..4257Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12507 4156..4257 +
1622924250.8437774-CDS-S-dermatodea_contig12507:6899..70131622924250.8437774-CDS-S-dermatodea_contig12507:6899..7013Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12507 6900..7013 +
1694079125.3429341-CDS-S-dermatodea_contig12507:6899..70131694079125.3429341-CDS-S-dermatodea_contig12507:6899..7013Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12507 6900..7013 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12507.1556.1

>prot_S-dermatodea_contig12507.1556.1 ID=prot_S-dermatodea_contig12507.1556.1|Name=mRNA_S-dermatodea_contig12507.1556.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=110bp
MFPALDGDGNDVPDDVSTSKHDQTQPGGGGNVNGDNHETEAGESSGVLES
GDGGGMFAGGGVSDDDGNTTREASDDEETELRRETAHLLHARAGARSRVD
ANSTAIFDIT
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mRNA from alignment at S-dermatodea_contig12507:3235..7013+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12507.1556.1 ID=mRNA_S-dermatodea_contig12507.1556.1|Name=mRNA_S-dermatodea_contig12507.1556.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3779bp|location=Sequence derived from alignment at S-dermatodea_contig12507:3235..7013+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TGGAGCTTCAGGGGAAAGAGGACATGTTTCCCGCCCTCGACGGAGACGGT
AATGATGTGCCCGATGACGTCAGCACTAGCAAACACGACCAGACACAGCC
TGGCGGCGGAGGCAACGTCAACGGGGACAACCACGAGGTGGCAATAGTTC
GCATCCATGTTTGTTTATTTTTGGTTACGTTTCTGCTTCTTCTTCCCCCC
TGAGCTACTATTAACAATACTACATTCATCTTCCGCGGTCGGGGTTCACG
GCGTGTTTATTTTCAATGGGTTTTTTCTGCTACATGCATCTCTCGCGCTC
GTGGTTCACGGCGCGTTTTTGTTTTCACTGGCCTTTGTTTTGCGTAACGG
TTGCCAGACTCGATGAGGACATCGCGGGTGCGTTGAGCCTTGGTAGGGTG
CTCGCCGCTGATTGATAACAATAATATCCCACCGCATTGGGTTCGTTCGG
CTCCCTCCCGCATCTCGCCGTTTTCTCGGATTTTGCTTACCCACGCACGC
TCTCGCGAATGCTTTCCGCGGCGGAGGTAGAGACAAATATCATGTATCGA
CCCTGCCCGGGTTCGAACCTGTAATCAATCAACCAACAACAATCAATCAA
TCAATCGACCAATCAATCAATCAATCAATCAACCAATCAACCAATCAATC
AACCAATCAATCAATCAATCAATCGATCAATTAGTCAATCAATCAACCAA
TCAACCAGCCAATCAAACAATCAATCAATCAAGTCAATCAATCAACCAAT
CAATTAGTCAATCAATCAATCAACCAATCAATCAATCAATCAACCAATCA
ATCAATCAATCAATTAGTCAATCAATCAACCAATCAGTCAACCAATCAAT
CAATCAATCAATCAATCAATTAATGACCGTTTTTTTGTAAATTTAAATAA
TTATTTTTGGCGTCCATCAAGACCGAGGCAGGCGAATCGTCGGGTGTGCT
GGAAAGCGGCGATGGAGGTGGCATGTTCGCGGGGGGGGGAGTAAGCGACG
ATGATGGAAACACCACCCGAGAGGTGACGTCTCTTTTTTTTGTTTTTTTT
TGCGTTTTTACGATTAGCGATAATGAAAAAACCACCCGAGAGGTGACGTC
TGCGTTTCTGTTTTTGTTTTGGTATTTTGCTCTTTTTGAACGGGTTTTCG
ATTTTTTTCTTAGAGCTGGCGACGATAGTGGAAACACCATCCGACAGGTG
AATATCTGTTTCTCGTTTTTTTTTCATTTTGTTTGTGGTTTGGTGTGTAT
GTGTGTGTGTGTGTTTTTTTTTTTTCTCATATGTTTTTAGAGTTAGGCCA
GCTCTTGTAGCATACGAAAACGCTCGAACAAAACGTTTTGTTTTCGATTT
TTCCGCGGAGTTGTTTTAAAAACCTATCTTATGGCTTTTACGGAAATTGC
TCGTTTCGTAACATGTTTTTTCGTCGGAGCGTTTTTGTAAGAAAGTCCCG
GCGGAAATGACCATCATTTCCGTGTGGCCGAGGGTACAAAAAGAGCTTTA
CGGGTATGACTGCGCCAAGAGAGACAGAGGCATGCGTCACCTGGGAACGC
AGCCCGGTGCTCCGGGCAAGGCAACCCAGCACGCAACCAACAACACTGAA
CACCACTGCACTGCCCACACTGATAGCTATCTAGAGCAATGGCGTCGAGT
AGTCGCGCCATCAACAACAGTCTGGCCTGCCCGTTCTGGCTGTGGCCTTC
GCAGAGTATTCGCTGGCCGCGAAGGCGGAGAATGAAAATTGTGGCGGACT
GAGCGCTCTCTGTCGCAGTGTATGTTGCTCAGCGATGCGATTCGTGTCTG
TCTGTCTGTCACCCGTATAGGACACGCAACCCAAACGCGATCGAAACCCG
CAAATTCGTTTCTGTAAGCCTTAACCCTCTTGGGACTAAGGCTGTTTTCG
GGTAACTGTTTGCTCTTATTATTTACCCTTTTGGGACTAAGCCTGGGGAC
GAAGCCTGTTTTCGGGTATCTGTTAGCTGTCATAATAGCAAACAGTAACA
GTTACCCGAAAACAGCCTTAGTCCCAAAAGGGTTAAGATAGCGTCGCTCG
AACTTTTCTCCGCGTCTTTTTCCATATTTTGGTTTTTGAAGCCTTTTGGC
TTTTTTTGCTTTTGGTTTTGGTTTTTGTTTTTGTCGTTGTTTTGTTGTTT
TGTTGGTTTTTATGGTTGTCCAGCTTGCATGTGTGCGTGTGGTTTGATTT
GGTTTTGTGTGTTTTCGTTTCGTAAAGAAAAAAAAAAAGTAAAAAAAAAA
AAAAACGGCTACCTGGCAAAAACAGACCCCCCTCCCCCCCCTAACACTGG
TTTCCAACTTGTGGGCACGGCAGAACAGCACTGCTGTAGGCATACTGATG
TTCTCTATTTTTTTTTTTTTTTTACAGCTTGTTTATCTTGATTAATTAAT
AGCGCCTTTGGCCGATTTTTAATAGCGATTTTAGAGAACGAGATGGTGAG
GCCGGAATCCTACGGGAGGAAGCGATGCCAAACAACTTGATGTTTGTGTT
GAGCGACGAGTGTTGGCAAGAGTGGGAAAAATTTGACCGCACGGGCGTGT
AGCCGTGGCTTTTCGACTTCTCGATTTCTCGTCTGACGGCGAGAGCGCGA
TGGGTCGTACGCGCAGAAAAAAAAAAACTGTAAACCAATGTGGTCTGGCC
GTATCATACGACATCTGCGCTCTTCCGGGCTGATGAAAAAATGTATTATT
ATATCATTTTTTTTTTTTTTTTTTTCGCACACATATGATAGACTTGCTCA
TCCAAGGTCCATCTGTGGTCACAAGGGATCACCCCATCTCTCCCCGGTGC
TCGCCTTTGCTTTTTATCGCGAACGTATTGGGTTCGGCAGTCCCGCAGCT
CGCCGATTTCTCGGATTTTTTGCTTACTCACGCTCTCACGCTTTCCGCGG
CGGAGGTAGAGAAAATAAATAAATATCGACTCTGCCGAGATTTACGCATT
ATAAAATAGTNNNNNNNNNNCCGGGATTCGAACCCCGGTCCTCCGCCTAC
TGGGCTGTTGGTCACCAGTTCAACCACGGGGCGCTGTTGTACACTATTAA
TAGTGGGTGCTCGGGCCAACGTTTATAAATACAGAATCTTGAATACTCTA
ATCTTAATACAATAATTTAGCAGGAATGTTGTCATGGTTACCGTGTGCCT
CCGTTTATAGCTTTTTTGCGTCCCACCCTGCTCTTTCGCATCCCCCAGCA
GGTTCCTACAGCGTTGGCTACAACAACACCAGTTGCTGCACAACGCTGGC
TGGACGAATGCAGGCGTGACTTTGTCACTGATTGATTGATTGATTGATTG
ATTGGTTGGTTGGTTGATTTGCACACGTATAGCCGATCGGCTTTTTCCGA
CCACCTATCCGACTTGTGGTCACACACGCAAAGAGTCAAGGAGAAAAATA
ACTAATCATAACTGTTCTTCTACTATACACGGTAGTACCGTTCTTGGTAC
ATACCACGGTACAAGAAGGAAGAAACAGTACCCCAGATATAGAAAAACGC
TATTGTAGAAGAGGACTCAGAATCGGACAACGCTCCCTCGCTGCAACAAT
TATTTCCCAATTCATCATCATGCAGTCAGTCGACAGGCCACCAGCACAAG
AGCTAGCTAGATCCCGATCAGAGCCCTTCGCTTCGTATCCCACTCTTCGC
CTTAATTTTGCGCAGGCCTCCGACGATGAGGAGACCGAGCTGAGACGAGA
AACAGCCCACCTTCTGCACGCTCGGGCGGGTGCTCGGTCTAGGGTCGACG
CGAACAGCACCGCCATTTTTGATATTACC
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Coding sequence (CDS) from alignment at S-dermatodea_contig12507:3235..7013+

>mRNA_S-dermatodea_contig12507.1556.1 ID=mRNA_S-dermatodea_contig12507.1556.1|Name=mRNA_S-dermatodea_contig12507.1556.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at S-dermatodea_contig12507:3235..7013+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTTTCCCGCCCTCGACGGAGACGGTAATGATGTGCCCGATGACGTCAG
CACTAGCAAACACGACCAGACACAGCCTGGCGGCGGAGGCAACGTCAACG
GGGACAACCACGAGATGTTTCCCGCCCTCGACGGAGACGGTAATGATGTG
CCCGATGACGTCAGCACTAGCAAACACGACCAGACACAGCCTGGCGGCGG
AGGCAACGTCAACGGGGACAACCACGAGACCGAGGCAGGCGAATCGTCGG
GTGTGCTGGAAAGCGGCGATGGAGGTGGCATGTTCGCGGGGGGGGGAGTA
AGCGACGATGATGGAAACACCACCCGAGAGACCGAGGCAGGCGAATCGTC
GGGTGTGCTGGAAAGCGGCGATGGAGGTGGCATGTTCGCGGGGGGGGGAG
TAAGCGACGATGATGGAAACACCACCCGAGAGGCCTCCGACGATGAGGAG
ACCGAGCTGAGACGAGAAACAGCCCACCTTCTGCACGCTCGGGCGGGTGC
TCGGTCTAGGGTCGACGCGAACAGCACCGCCATTTTTGATATTACCGCCT
CCGACGATGAGGAGACCGAGCTGAGACGAGAAACAGCCCACCTTCTGCAC
GCTCGGGCGGGTGCTCGGTCTAGGGTCGACGCGAACAGCACCGCCATTTT
TGATATTACC
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