mRNA_S-dermatodea_contig12496.1549.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12496.1549.1
Unique NamemRNA_S-dermatodea_contig12496.1549.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig12496.1549.1 vs. uniprot
Match: A0A6H5JBZ5_9PHAE (DOMON domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBZ5_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 8.560e-34
Identity = 70/100 (70.00%), Postives = 76/100 (76.00%), Query Frame = 1
Query:    1 AVLSPALAVDTYYATAVSNRSPFFKLPVDGVQRGRDHGLPTYNGAREAYNLTAAADFSDVTSDADLSALLSAAYDGDIDTLDAITGGLAEDT-LSTGGIF 297
            AVLSPAL VD YY+  VSN SP FKLPVDGVQRGRDHGLP+YN AREAY L  A  F DV+ DADL++ LS AY GDID LDA TG LAE T  STGG+ 
Sbjct:   17 AVLSPALTVDAYYSPVVSNLSPLFKLPVDGVQRGRDHGLPSYNAAREAYGLDPATTFEDVSDDADLASRLSDAYGGDIDGLDAFTGALAEGTDSSTGGVL 116          
BLAST of mRNA_S-dermatodea_contig12496.1549.1 vs. uniprot
Match: D7FQW8_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQW8_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 3.660e-32
Identity = 69/100 (69.00%), Postives = 77/100 (77.00%), Query Frame = 1
Query:    1 AVLSPALAVDTYYATAVSNRSPFFKLPVDGVQRGRDHGLPTYNGAREAYNLTAAADFSDVTSDADLSALLSAAYDGDIDTLDAITGGLAEDT-LSTGGIF 297
            AVLSPAL VD YY+  VSN SP FKLPVDGVQRGRDHGLP+YNGAREA+ L  A  F DV+ DADL++ LS AY GDI+ LDA TG LAE T  STGG+ 
Sbjct:  284 AVLSPALTVDAYYSPVVSNLSPLFKLPVDGVQRGRDHGLPSYNGAREAFGLDPATTFEDVSDDADLASRLSDAYGGDINGLDAFTGALAEGTHSSTGGVL 383          
BLAST of mRNA_S-dermatodea_contig12496.1549.1 vs. uniprot
Match: D7G7J1_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J1_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 8.230e-31
Identity = 68/100 (68.00%), Postives = 76/100 (76.00%), Query Frame = 1
Query:    1 AVLSPALAVDTYYATAVSNRSPFFKLPVDGVQRGRDHGLPTYNGAREAYNLTAAADFSDVTSDADLSALLSAAYDGDIDTLDAITGGLAEDT-LSTGGIF 297
            AVLSPA+AV  +YA+AVSN SP FKLPVD VQRGRDHG+P+YN  R AY L  A DFSDV+SD D+  LL AAY G+ID LDA TG LAED   S GGIF
Sbjct:  317 AVLSPAMAVGAHYASAVSNASPLFKLPVDMVQRGRDHGVPSYNDVRGAYGLPEATDFSDVSSDGDVVQLLDAAYGGEIDNLDACTGALAEDKEASLGGIF 416          
BLAST of mRNA_S-dermatodea_contig12496.1549.1 vs. uniprot
Match: D8LFE6_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFE6_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 2.660e-27
Identity = 67/116 (57.76%), Postives = 77/116 (66.38%), Query Frame = 1
Query:    1 AVLSPALAVDTYYATAVSNRSPFFKLPVDGVQRGRDHGLPTYNGAREAYNLTAAADFSDVT----------------SDADLSALLSAAYDGDIDTLDAITGGLAEDTL-STGGIF 297
            AVLSP LA ++Y+ TAVSN SP FKLPVD VQRGRDH LPTYN AR+A+ L  A  FSDVT                SD  ++ +LSAAY GDI TLDA+TG LAE  L S+GG F
Sbjct:  393 AVLSPVLAANSYFTTAVSNGSPLFKLPVDAVQRGRDHALPTYNDARQAFGLDVATTFSDVTTSXXXXXXXXXXXXXDSDELVATILSAAYGGDISTLDAVTGALAEPMLTSSGGFF 508          
BLAST of mRNA_S-dermatodea_contig12496.1549.1 vs. uniprot
Match: D7FX03_ECTSI (Peroxinectin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX03_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 2.890e-26
Identity = 66/122 (54.10%), Postives = 79/122 (64.75%), Query Frame = 1
Query:    1 AVLSPALAVDTYYATAVSNRSPFFKLPVDGVQRGRDHGLPTYNGAREAYNLTAAADFSDVT--------------------SDAD--LSALLSAAYDGDIDTLDAITGGLAEDTL-STGGIF 297
            AVLSP  A DT+Y  AVSN SP FKLPVD VQRGRDHGLPTYN AR A+ L+ A  F+DVT                    SDAD  ++ +LS AY G++ TLDA+TG LAE T+ S+GG+F
Sbjct:  473 AVLSPVYAADTHYTAAVSNGSPLFKLPVDSVQRGRDHGLPTYNDARAAFGLSEATTFTDVTTXXXXXXXXXXXXXXXXXXGSDADEEVADILSTAYGGNVSTLDAVTGALAEPTMASSGGVF 594          
BLAST of mRNA_S-dermatodea_contig12496.1549.1 vs. uniprot
Match: A0A6H5JBL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBL8_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 4.380e-26
Identity = 66/120 (55.00%), Postives = 78/120 (65.00%), Query Frame = 1
Query:    1 AVLSPALAVDTYYATAVSNRSPFFKLPVDGVQRGRDHGLPTYNGAREAYNLTAAADFSDVT------------------SDAD--LSALLSAAYDGDIDTLDAITGGLAEDTL-STGGIF 297
            AVLSP  A DT+Y  AVSN SP FKLPVD VQRGRDHGLPTYN AR A+ L+ A  F+DVT                  SDAD  ++ +LS AY G++ TLDA+TG LAE T+ S+GG F
Sbjct:  504 AVLSPVYAADTHYTAAVSNGSPLFKLPVDSVQRGRDHGLPTYNDARAAFGLSEATTFTDVTTSXXXXXXXXXXXXXXXGSDADEEVADILSTAYGGNVSTLDAVTGALAEPTMASSGGFF 623          
BLAST of mRNA_S-dermatodea_contig12496.1549.1 vs. uniprot
Match: A0A6H5JQ31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ31_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 1.500e-25
Identity = 61/100 (61.00%), Postives = 73/100 (73.00%), Query Frame = 1
Query:    1 AVLSPALAVDTYYATAVSNRSPFFKLPVDGVQRGRDHGLPTYNGAREAYNLTAAADFSDVTSDADLSALLSAAYDGDIDTLDAITGGLAEDT-LSTGGIF 297
            AVLSPA+AV  +YA+AVSN SP FKLPVD VQR RDHG+P+YN  REAY+L  A   SDV++D D+  LL AAY G+I+ LDA  G LAE+   S GG F
Sbjct:  302 AVLSPAMAVGAHYASAVSNASPLFKLPVDMVQRARDHGVPSYNDVREAYDLPKATAMSDVSADDDVVELLYAAYGGEIENLDACVGALAEEKEASLGGNF 401          
BLAST of mRNA_S-dermatodea_contig12496.1549.1 vs. uniprot
Match: D7G7J2_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J2_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 2.060e-25
Identity = 61/100 (61.00%), Postives = 74/100 (74.00%), Query Frame = 1
Query:    1 AVLSPALAVDTYYATAVSNRSPFFKLPVDGVQRGRDHGLPTYNGAREAYNLTAAADFSDVTSDADLSALLSAAYDGDIDTLDAITGGLAEDT-LSTGGIF 297
            AVLSPA+AV  ++A+AVSN SP FKLPVD VQR RDHG+P+YN  REAY L+ A  FSDV++D D+  LL AAY G+I+ LDA  G LAE+   S GG F
Sbjct:  317 AVLSPAMAVWPHFASAVSNASPLFKLPVDMVQRARDHGVPSYNDVREAYELSKATAFSDVSADDDVVQLLYAAYGGEIENLDACVGALAEEKEASLGGNF 416          
BLAST of mRNA_S-dermatodea_contig12496.1549.1 vs. uniprot
Match: D8LB73_ECTSI (Peroxinectin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB73_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 1.550e-18
Identity = 47/94 (50.00%), Postives = 60/94 (63.83%), Query Frame = 1
Query:   16 ALAVDTYYATAVSNRSPFFKLPVDGVQRGRDHGLPTYNGAREAYNLTAAADFSDVTSDADLSALLSAAYDGDIDTLDAITGGLAEDTLSTGGIF 297
            A  +D  +   VS  SP F  PV+ +QRGRDHG+P+YN AREAY L+    F+++TSD  + A LS AY  D+D LDA TG LAE T    G+F
Sbjct:  392 ARGIDASFVAEVSVSSPLFNFPVEAIQRGRDHGVPSYNSAREAYALSRFDSFAEITSDTTVQATLSTAYGNDVDLLDAYTGALAE-TEEGSGLF 484          
BLAST of mRNA_S-dermatodea_contig12496.1549.1 vs. uniprot
Match: A0A6H5K036_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K036_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 6.710e-15
Identity = 36/47 (76.60%), Postives = 40/47 (85.11%), Query Frame = 1
Query:    1 AVLSPALAVDTYYATAVSNRSPFFKLPVDGVQRGRDHGLPTYNGARE 141
            AVLSP LA D+++ TAVSN SP FKLPVD VQRGRDHGLPTYN AR+
Sbjct:  467 AVLSPVLAADSHFTTAVSNGSPLFKLPVDAVQRGRDHGLPTYNDARQ 513          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12496.1549.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JBZ5_9PHAE8.560e-3470.00DOMON domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FQW8_ECTSI3.660e-3269.00Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D7G7J1_ECTSI8.230e-3168.00Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D8LFE6_ECTSI2.660e-2757.76Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D7FX03_ECTSI2.890e-2654.10Peroxinectin n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A6H5JBL8_9PHAE4.380e-2655.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQ31_9PHAE1.500e-2561.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7J2_ECTSI2.060e-2561.00Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D8LB73_ECTSI1.550e-1850.00Peroxinectin n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A6H5K036_9PHAE6.710e-1576.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12496contigS-dermatodea_contig12496:4678..5443 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.8
Seed ortholog evalue7e-28
Seed eggNOG ortholog2880.D7FQW8
EggNOG free text desc.peroxidase activity
EggNOG OGsKOG2408@1,KOG2408@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size299
Cds size297
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924250.1606638-CDS-S-dermatodea_contig12496:4678..48341622924250.1606638-CDS-S-dermatodea_contig12496:4678..4834Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12496 4679..4834 -
1694079124.752242-CDS-S-dermatodea_contig12496:4678..48341694079124.752242-CDS-S-dermatodea_contig12496:4678..4834Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12496 4679..4834 -
1622924250.1756978-CDS-S-dermatodea_contig12496:5302..54431622924250.1756978-CDS-S-dermatodea_contig12496:5302..5443Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12496 5303..5443 -
1694079124.7647495-CDS-S-dermatodea_contig12496:5302..54431694079124.7647495-CDS-S-dermatodea_contig12496:5302..5443Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12496 5303..5443 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12496.1549.1prot_S-dermatodea_contig12496.1549.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12496 4679..5443 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12496.1549.1

>prot_S-dermatodea_contig12496.1549.1 ID=prot_S-dermatodea_contig12496.1549.1|Name=mRNA_S-dermatodea_contig12496.1549.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=99bp
AVLSPALAVDTYYATAVSNRSPFFKLPVDGVQRGRDHGLPTYNGAREAYN
LTAAADFSDVTSDADLSALLSAAYDGDIDTLDAITGGLAEDTLSTGGIF
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mRNA from alignment at S-dermatodea_contig12496:4678..5443-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12496.1549.1 ID=mRNA_S-dermatodea_contig12496.1549.1|Name=mRNA_S-dermatodea_contig12496.1549.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=766bp|location=Sequence derived from alignment at S-dermatodea_contig12496:4678..5443- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGGTGCTATCCCCTGCCCTCGCGGTGGACACGTACTACGCGACAGCCGT GTCTAACCGTTCGCCGTTTTTCAAGCTCCCCGTTGATGGGGTGCAGCGTG GCCGGGACCACGGGTTGCCGACCTACAATGGCGCTCGGGAGGCGAGTTGG TGTTTGGAACATATAGGAGGGGGTTGTACTATGAGTCTGTTCCACGATTG TTTGTGGGGTGGGTGTTTGCTGCTGCCTGGCGCCGGTAGTCAACAGAGTC AGGAATAGTGCCTGGTATCAGGTGCCATGGTGGGTGGAACGACATCCAGC CGCAACCAACTACGATGTTTGTGCTGTGTGTTGATTTTGTCTTATTTGAT TGATTTGCACACGTATAGCCGGTCGGCTTAATCTGACTCGACAAGTGGTC AGATGCACAAAAGGTGTGTGCAGAACGATATGAGCAATCTGGCAGCGTTT TCTGTTGAGGAGACAATGTCTGTCCGTCCTCCAAAAACTGGGCATTGTCG GAGACCCTCTCGGCAATCAAACTCGCTTCCCCTAATATCTGTGATGCTGT GTTACACCCCCGTGACCCCGCCTCCTGGTGCCACGGTCGCCCAACAATGC GTGTCTCAGGCGTACAATCTCACGGCCGCTGCTGACTTCTCGGACGTCAC CTCTGACGCCGACCTTAGTGCGCTGCTCAGCGCCGCTTACGACGGGGACA TCGACACTCTAGACGCGATTACGGGAGGGCTAGCGGAGGATACCCTGAGC ACCGGAGGTATTTTCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig12496:4678..5443-

>mRNA_S-dermatodea_contig12496.1549.1 ID=mRNA_S-dermatodea_contig12496.1549.1|Name=mRNA_S-dermatodea_contig12496.1549.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=594bp|location=Sequence derived from alignment at S-dermatodea_contig12496:4678..5443- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGGTGCTATCCCCTGCCCTCGCGGTGGACACGTACTACGCGACAGCCGT
GTCTAACCGTTCGCCGTTTTTCAAGCTCCCCGTTGATGGGGTGCAGCGTG
GCCGGGACCACGGGTTGCCGACCTACAATGGCGCTCGGGAGGCGGTGCTA
TCCCCTGCCCTCGCGGTGGACACGTACTACGCGACAGCCGTGTCTAACCG
TTCGCCGTTTTTCAAGCTCCCCGTTGATGGGGTGCAGCGTGGCCGGGACC
ACGGGTTGCCGACCTACAATGGCGCTCGGGAGGCGTACAATCTCACGGCC
GCTGCTGACTTCTCGGACGTCACCTCTGACGCCGACCTTAGTGCGCTGCT
CAGCGCCGCTTACGACGGGGACATCGACACTCTAGACGCGATTACGGGAG
GGCTAGCGGAGGATACCCTGAGCACCGGAGGTATTTTCGCGTACAATCTC
ACGGCCGCTGCTGACTTCTCGGACGTCACCTCTGACGCCGACCTTAGTGC
GCTGCTCAGCGCCGCTTACGACGGGGACATCGACACTCTAGACGCGATTA
CGGGAGGGCTAGCGGAGGATACCCTGAGCACCGGAGGTATTTTC
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