mRNA_S-dermatodea_contig12495.1546.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12495.1546.1
Unique NamemRNA_S-dermatodea_contig12495.1546.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12495.1546.1 vs. uniprot
Match: A0A6H5JQ98_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ98_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 5.550e-38
Identity = 73/89 (82.02%), Postives = 80/89 (89.89%), Query Frame = 2 
Query:    2 ARVCTLLQENMAMISSIHENIVMGRFFDNHSLMISFDKNVKEVTALLATLPFAEMQKLPVQINPYFISGSLPPGLGPPHGPPQPGSPTH 268
            ARVCTLLQENMA+I+SI EN+VMGRFFDNH LMI+FDKNVKEVTALLATLPFAEMQKLPVQINPYFI+GSLP G+G      QPGSP+H
Sbjct:  192 ARVCTLLQENMALINSIRENMVMGRFFDNHPLMIAFDKNVKEVTALLATLPFAEMQKLPVQINPYFITGSLPAGVGVQ----QPGSPSH 276
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BLAST of mRNA_S-dermatodea_contig12495.1546.1 vs. uniprot
Match: D7G053_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G053_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 4.640e-20
Identity = 45/51 (88.24%), Postives = 49/51 (96.08%), Query Frame = 2 
Query:   32 MAMISSIHENIVMGRFFDNHSLMISFDKNVKEVTALLATLPFAEMQKLPVQ 184
            MA+I+SI EN+VMGRFFDNH LMI+FDKNVKEVTALLATLPFAEMQKLPVQ
Sbjct:    1 MALINSIRENMVMGRFFDNHPLMIAFDKNVKEVTALLATLPFAEMQKLPVQ 51
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12495.1546.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JQ98_9PHAE5.550e-3882.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G053_ECTSI4.640e-2088.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12495contigS-dermatodea_contig12495:790..2514 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size272
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924250.0455847-CDS-S-dermatodea_contig12495:789..9731622924250.0455847-CDS-S-dermatodea_contig12495:789..973Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12495 790..973 +
1694079124.7081382-CDS-S-dermatodea_contig12495:789..9731694079124.7081382-CDS-S-dermatodea_contig12495:789..973Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12495 790..973 +
1622924250.0551717-CDS-S-dermatodea_contig12495:2427..25131622924250.0551717-CDS-S-dermatodea_contig12495:2427..2513Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12495 2428..2513 +
1694079124.7229896-CDS-S-dermatodea_contig12495:2427..25131694079124.7229896-CDS-S-dermatodea_contig12495:2427..2513Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12495 2428..2513 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12495.1546.1prot_S-dermatodea_contig12495.1546.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12495 790..2513 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12495.1546.1

>prot_S-dermatodea_contig12495.1546.1 ID=prot_S-dermatodea_contig12495.1546.1|Name=mRNA_S-dermatodea_contig12495.1546.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=90bp
GTGVYSFAREHGDDQQHPREHRDGAVLRQPLADDQLRQEREGGDGFAGDA
ALRRDAEAARPDQSVFHLGLAPAGLGPATRPAATGIPDPP
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mRNA from alignment at S-dermatodea_contig12495:790..2514+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12495.1546.1 ID=mRNA_S-dermatodea_contig12495.1546.1|Name=mRNA_S-dermatodea_contig12495.1546.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1725bp|location=Sequence derived from alignment at S-dermatodea_contig12495:790..2514+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCACGGGTGTGTACTCTTTTGCAAGAGAACATGGCGATGATCAGCAGCA
TCCACGAGAACATCGTGATGGGGCGGTTCTTCGACAACCACTCGCTGATG
ATCAGCTTCGACAAGAACGTGAAGGAGGTGACGGCTTTGCTGGCGACGCT
GCCCTTCGCAGAGATGCAGAAGCTGCCCGTCCAGGTGTGTGCGAAGCTCA
AACAGCACTGCTGTCAGTTTCCTGGTCTCCTTCTATTGTTGCGGTTCGCG
TCGACTTGGTTTTACGGAGTTGGCTGGTGTGTGGCGCGGGTGTGCTCTTG
CAGGGCCGTTCACCGGCCGAGCATTGACGAGCCATTTGGTTGTAATGTGC
AATCAATCAATCGATCAATCAGTCAACCCCACCCGACCCCGACCCAGATT
GAGGAGGGTTTACGTGCTGGTCGCAATCGTCTGTAGCAAGGAGAGATGGT
AGCTTATCCCCTTTGGAAGTGAGGTCGATTTTTGGAAGCACCCGCGTGCA
CTGTGTTCCACATCGAACAGGTACAGTACAGTACCCGAACGGTGGATGTG
GCTTGCTCGTCGCCGCACATAGTGGCGGTGGGAAAGAGATATCCCTGTAG
AGTAGAGTAGTTGTTAATAGCATGCACGCACGTGGTGCGCATGTGTGTGC
ACCCTCACCGCAATACACCCGTAGTGATACATAGTGACGATATTCCGCGC
AAAACGAACTCAGTCCCAAAAGGGTTAAAAGTTAATACATTTAGGCAGTA
CTAGTGGGTAGCCACGGCTACGCCAGTGTGAGGTGTGCGTTGGCAGGGCG
ATATGCCGACGGAACGCGACACGGAGGTCGAACGCGGTCGAGTTACTGCT
GTGCGTGTCGCTGCTGTGCGTGTCGCTGCTGTGTTTTCGCATTTATATGT
TTAAAAAATGCTCAACACAATCATCAAGTTGTTTGGCATCAGACAGCATC
CTTTTCTAAAATCAATATGAACAATCAGTCATTGTTGCATTAATTAGTTA
GACATAGGTAGCTATAATAGTAGTTAATAGGTAGGCTAGTGAAAGGATAG
GTCGTATAGTGGTAGCCCTTCTTGTGCGTTCTACAAGCGGTATCAAATCT
AGAAAAATCACGACGCACTTGCTACACGTACACACATACGTCTGTCACCG
TCACCTTTTGTTGTGCGCCTGTCGCGGACACTCCCCGCTACGATTGTTCC
ACACCCGATCATGAAAACGGTGCTCTGTCGGAAGGGTGTCACGGCATTAT
CATACGTCCCATCGAGGCGTGCGCCTTTTAGACACACGTGGCAGGCCGGT
TGGTCTTTGCCTTATCCCTTTTGGGACCGAGGCTGTTTTCGGTGTTAGGC
CATCTGCCCGCACTATACCTCACATGGAAGAGGTACAGGACCCGAACGGT
GGCTACTATATACTCACAGATGGCCGAACCCCGAAAACAGGCTCAGTCCC
AAAAGGGTTAAGCCACCTCAACACCACAGCTCCTCTGCTGGCCTCGCATT
TCCTTTCCCCGTTTCGCTCACACGTCACCCCCGCCCCCCCCCCGCCACGC
CTCCTACATCCCCCCCCACACGCACGCCCGATCTCAAAACGCCGCCCTCG
CATGCGCCCGACAACGCCCACAAACGGGAAAAACGAAGATCAATCCGTAT
TTCATCTCGGGCTCGCTCCCGCCGGGCTTGGGCCCGCCACACGGCCCGCC
GCAACCGGGATCCCCGACCCACCAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig12495:790..2514+

>mRNA_S-dermatodea_contig12495.1546.1 ID=mRNA_S-dermatodea_contig12495.1546.1|Name=mRNA_S-dermatodea_contig12495.1546.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=540bp|location=Sequence derived from alignment at S-dermatodea_contig12495:790..2514+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCACGGGTGTGTACTCTTTTGCAAGAGAACATGGCGATGATCAGCAGCA
TCCACGAGAACATCGTGATGGGGCGGTTCTTCGACAACCACTCGCTGATG
ATCAGCTTCGACAAGAACGTGAAGGAGGTGACGGCTTTGCTGGCGACGCT
GCCCTTCGCAGAGATGCAGAAGCTGCCCGTCCAGGGCACGGGTGTGTACT
CTTTTGCAAGAGAACATGGCGATGATCAGCAGCATCCACGAGAACATCGT
GATGGGGCGGTTCTTCGACAACCACTCGCTGATGATCAGCTTCGACAAGA
ACGTGAAGGAGGTGACGGCTTTGCTGGCGACGCTGCCCTTCGCAGAGATG
CAGAAGCTGCCCGTCCAGATCAATCCGTATTTCATCTCGGGCTCGCTCCC
GCCGGGCTTGGGCCCGCCACACGGCCCGCCGCAACCGGGATCCCCGACCC
ACCAATCAATCCGTATTTCATCTCGGGCTCGCTCCCGCCGGGCTTGGGCC
CGCCACACGGCCCGCCGCAACCGGGATCCCCGACCCACCA
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