mRNA_S-dermatodea_contig12493.1545.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12493.1545.1
Unique NamemRNA_S-dermatodea_contig12493.1545.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12493.1545.1 vs. uniprot
Match: D7FIE2_ECTSI (Abhydrolase domain-containing protein, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIE2_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 3.410e-16
Identity = 41/66 (62.12%), Postives = 48/66 (72.73%), Query Frame = 1 
Query:  109 IPAGGATDSSSPVSPLRQHPLLLWLNLLDTEYDGHLLLLSLGAYYLLLAACGWFVLQRFRRGRPWA 306
            +P+GG       +S  +QHPLLLWL++   E  G LLLLS+ AYYLLL ACGWFVLQ FRRGRPWA
Sbjct:    5 LPSGGGVGGK--LSSGQQHPLLLWLDVPGYEQSGPLLLLSIAAYYLLLFACGWFVLQWFRRGRPWA 68
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12493.1545.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIE2_ECTSI3.410e-1662.12Abhydrolase domain-containing protein, putative n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12493contigS-dermatodea_contig12493:5549..5854 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.9
Seed ortholog evalue3.9e-13
Seed eggNOG ortholog2880.D7FIE2
KEGG koko:K13696
EggNOG free text desc.poly(3-hydroxybutyrate) depolymerase activity
EggNOG OGsCOG0429@1,KOG1838@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categorysignal anchor
Exons1
Model size306
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924250.0074177-CDS-S-dermatodea_contig12493:5548..58541622924250.0074177-CDS-S-dermatodea_contig12493:5548..5854Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12493 5549..5854 +
1694079124.6935663-CDS-S-dermatodea_contig12493:5548..58541694079124.6935663-CDS-S-dermatodea_contig12493:5548..5854Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12493 5549..5854 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12493.1545.1prot_S-dermatodea_contig12493.1545.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12493 5549..5854 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12493.1545.1

>prot_S-dermatodea_contig12493.1545.1 ID=prot_S-dermatodea_contig12493.1545.1|Name=mRNA_S-dermatodea_contig12493.1545.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=102bp
PTPSQPDTTHIHLLACKGLLRTLLLSWRDASKAMAMIPAGGATDSSSPVS
PLRQHPLLLWLNLLDTEYDGHLLLLSLGAYYLLLAACGWFVLQRFRRGRP
WA
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mRNA from alignment at S-dermatodea_contig12493:5549..5854+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12493.1545.1 ID=mRNA_S-dermatodea_contig12493.1545.1|Name=mRNA_S-dermatodea_contig12493.1545.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=306bp|location=Sequence derived from alignment at S-dermatodea_contig12493:5549..5854+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCAACACCAAGCCAACCCGACACCACGCACATCCACCTCCTTGCTTGCAA
AGGCCTGCTCCGCACCCTACTCCTGAGCTGGCGGGACGCCAGCAAAGCCA
TGGCGATGATCCCTGCAGGAGGCGCGACTGACTCGTCATCGCCCGTGTCC
CCGCTTCGGCAGCACCCGCTCCTGCTGTGGCTCAACCTCCTCGACACAGA
GTACGACGGTCATCTCCTGCTGCTATCGCTGGGAGCCTACTACCTCCTCC
TCGCAGCGTGCGGCTGGTTTGTCCTCCAGCGGTTCCGCCGAGGCCGGCCG
TGGGCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig12493:5549..5854+

>mRNA_S-dermatodea_contig12493.1545.1 ID=mRNA_S-dermatodea_contig12493.1545.1|Name=mRNA_S-dermatodea_contig12493.1545.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at S-dermatodea_contig12493:5549..5854+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCAACACCAAGCCAACCCGACACCACGCACATCCACCTCCTTGCTTGCAA
AGGCCTGCTCCGCACCCTACTCCTGAGCTGGCGGGACGCCAGCAAAGCCA
TGGCGATGATCCCTGCAGGAGGCGCGACTGACTCGTCATCGCCCGTGTCC
CCGCTTCGGCAGCACCCGCTCCTGCTGTGGCTCAACCTCCTCGACACAGA
GTACGACGGTCATCTCCTGCTGCTATCGCTGGGAGCCTACTACCTCCTCC
TCGCAGCGTGCGGCTGGTTTGTCCTCCAGCGGTTCCGCCGAGGCCGGCCG
TGGGCGCCAACACCAAGCCAACCCGACACCACGCACATCCACCTCCTTGC
TTGCAAAGGCCTGCTCCGCACCCTACTCCTGAGCTGGCGGGACGCCAGCA
AAGCCATGGCGATGATCCCTGCAGGAGGCGCGACTGACTCGTCATCGCCC
GTGTCCCCGCTTCGGCAGCACCCGCTCCTGCTGTGGCTCAACCTCCTCGA
CACAGAGTACGACGGTCATCTCCTGCTGCTATCGCTGGGAGCCTACTACC
TCCTCCTCGCAGCGTGCGGCTGGTTTGTCCTCCAGCGGTTCCGCCGAGGC
CGGCCGTGGGCG
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