mRNA_S-dermatodea_contig12489.1541.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12489.1541.1
Unique NamemRNA_S-dermatodea_contig12489.1541.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12489.1541.1 vs. uniprot
Match: D8LCB5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCB5_ECTSI)

HSP 1 Score: 389 bits (998), Expect = 4.020e-126
Identity = 185/222 (83.33%), Postives = 206/222 (92.79%), Query Frame = 2 
Query:    2 GPRPADTNYQQLNPPPVVPEGFENWSGVMDTWGNKMIGALETVARLCALGLGLEKEAITSLMHEGPHLLAPTGSNFGKHNAVGTALAGFHYDFNLLTIHGKSRYPGLSVWLRDGRRVPVSVPDGCLLVQAGKQLERLTGGHVLAGFHEVAISEATVETIRKRKQAGKSLWRISSTCFCHVASDQARKVLRPLGSFATDEAVSAYPSTTAGDMMQEELRAINL 667
            GPRPA T YQQLNPPPVVPEGFENWS +MD WGNKMIGALETV+RLCA+GLGL++EAI++LMHEGPHLLAPTGSNF K ++ GT LAG+HYDFNLLTIHGKSRYPGLSVWLRDGR++PVSVPDGCLLVQAGKQLERLTGGHVLAGFHEVA+S+AT+ET+RKRKQ G+SLWRISSTCF HVASDQ   VLRPLG FAT+EA++ YPS TAGDMMQEEL+AINL
Sbjct:  123 GPRPAVTKYQQLNPPPVVPEGFENWSTIMDAWGNKMIGALETVSRLCAIGLGLDEEAISTLMHEGPHLLAPTGSNFDKFDSAGTVLAGYHYDFNLLTIHGKSRYPGLSVWLRDGRKMPVSVPDGCLLVQAGKQLERLTGGHVLAGFHEVAVSQATIETMRKRKQEGQSLWRISSTCFGHVASDQ---VLRPLGKFATEEALAQYPSITAGDMMQEELKAINL 341
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BLAST of mRNA_S-dermatodea_contig12489.1541.1 vs. uniprot
Match: A0A2V0P8E6_9CHLO (2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P8E6_9CHLO)

HSP 1 Score: 292 bits (747), Expect = 1.640e-88
Identity = 143/223 (64.13%), Postives = 171/223 (76.68%), Query Frame = 2 
Query:    2 GPRPADTNYQQLNPPPVVPEGFENWSGVMDTWGNKMIGALETVARLCALGLGLEKEAITSLMHEGPHLLAPTGSNFGKHNAVGTALAGFHYDFNLLTIHGKSRYPGLSVWLRDGRRVPVSVPDGCLLVQAGKQLERLTGGHVLAGFHEVAISEATVETIRKRKQAGKSLWRISSTCFCHVASDQARKVLRPLGSFA-TDEAVSAYPSTTAGDMMQEELRAINL 667
            GPRP+D  Y++LN  PVVP+GF  W+ VMD+WG KM+GA++ VA   A+G GLE +AIT LM  GPHLLAPTGS+  KH A+GT LAGFHYD NLLTIHG+SR+PGL VWLRDGRRVPV VP GCLL+QAG+QLE LTGGHV AG+HEV ++EAT E   +  +AG+SLWR+SST F HVAS Q   VLRPLG F     A +AYP T AG  +Q+EL AI+L
Sbjct:  136 GPRPSDGKYKELNAEPVVPQGFPQWAAVMDSWGGKMLGAVQLVATAAAVGFGLEPDAITKLMAFGPHLLAPTGSDLAKHGALGTVLAGFHYDLNLLTIHGRSRFPGLHVWLRDGRRVPVRVPAGCLLLQAGRQLEWLTGGHVKAGWHEVVVTEATSEAAARASEAGRSLWRVSSTVFAHVASAQ---VLRPLGRFGGAGAAAAAYPPTEAGVQVQQELEAISL 355
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BLAST of mRNA_S-dermatodea_contig12489.1541.1 vs. uniprot
Match: A0A7S2S0B3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S0B3_9STRA)

HSP 1 Score: 284 bits (726), Expect = 5.340e-85
Identity = 139/222 (62.61%), Postives = 166/222 (74.77%), Query Frame = 2 
Query:    2 GPRPADTNYQQLNPPPVVPEGFENWSGVMDTWGNKMIGALETVARLCALGLGLEKEAITSLMHEGPHLLAPTGSNFGKHNAVGTALAGFHYDFNLLTIHGKSRYPGLSVWLRDGRRVPVSVPDGCLLVQAGKQLERLTGGHVLAGFHEVAISEATVETIRKRKQAGKSLWRISSTCFCHVASDQARKVLRPLGSFATDEAVSAYPSTTAGDMMQEELRAINL 667
            GP+P  T Y  LN  PV+P+ F  W GVM+ WGNKM+ AL+T+A + A GL L       +M  GPHLLAPTGS+F K+N V TALAGFHYD N LTIHGKSR+PGL VWLRDGRRVPV VP+G L+VQAGKQ+E LTGGHVLAGFHEV +SEATV+TI KR+  GK+LWR+SST F H+ASD +   LRPLG F T EA + +P+  AG  +Q+EL AI L
Sbjct:  169 GPQPKSTKYPGLNADPVIPDEFPEWHGVMNMWGNKMLAALDTLAGMAAEGLDLPPTTFQDMMSFGPHLLAPTGSDFSKYNQVDTALAGFHYDLNFLTIHGKSRFPGLYVWLRDGRRVPVKVPEGHLIVQAGKQIEYLTGGHVLAGFHEVVVSEATVKTIEKRRAEGKALWRVSSTLFGHIASDHS---LRPLGRFDTPEARAQFPAIDAGQQVQKELEAIAL 387
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BLAST of mRNA_S-dermatodea_contig12489.1541.1 vs. uniprot
Match: W2XKW3_PHYPR (2OG-FeII_Oxy domain-containing protein n=1 Tax=Phytophthora parasitica CJ01A1 TaxID=1317063 RepID=W2XKW3_PHYPR)

HSP 1 Score: 277 bits (708), Expect = 1.580e-84
Identity = 132/224 (58.93%), Postives = 165/224 (73.66%), Query Frame = 2 
Query:    2 GPRPADTNYQQLNPPPVVPEGFENWSGVMDTWGNKMIGALETVARLCALGLGLEKEAITSLMHEGPHLLAPTGSNFGKHNAVGTALAGFHYDFNLLTIHGKSRYPGLSVWLRDGRRVPVSVPDGCLLVQAGKQLERLTGGHVLAGFHEVAISEATVETIRKRKQAGKSLWRISSTCFCHVASDQARKVLRPLGSFATDEAVSAYPSTTAGDMMQEELRAINLGT 673
            G RPADT +++LN  PVVP+ F  W  VM+ WG KM+ A+  +  + ALGLGLEK+A+   +  GPHLLAPTGSNF   N +   LA +HYD NLLTIHGKSR+PGL +WLRDG R  V +PDGCLLVQAGKQ+E LTGG+V AGFHEV ++E+T++TI +RK+ GKSLWR+SST F H ASD   K L PLG FAT +A++ YP   AG+ + EEL  I+LGT
Sbjct:   15 GERPADTKFEELNAEPVVPKKFPEWESVMNMWGGKMLDAITDLVEIVALGLGLEKDALVDRIKYGPHLLAPTGSNFNVFNQLNDVLAAYHYDLNLLTIHGKSRFPGLYIWLRDGTRTAVKIPDGCLLVQAGKQMEYLTGGYVQAGFHEVVVAESTLDTIAQRKKEGKSLWRVSSTLFSHTASD---KTLVPLGPFATPDALAKYPPILAGNQVLEELSQIDLGT 235
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BLAST of mRNA_S-dermatodea_contig12489.1541.1 vs. uniprot
Match: A0A8K1FF67_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FF67_PYTOL)

HSP 1 Score: 277 bits (708), Expect = 4.670e-83
Identity = 132/223 (59.19%), Postives = 161/223 (72.20%), Query Frame = 2 
Query:    2 GPRPADTNYQQLNPPPVVPEGFENWSGVMDTWGNKMIGALETVARLCALGLGLEKEAITSLMHEGPHLLAPTGSNFGKHNAVGTALAGFHYDFNLLTIHGKSRYPGLSVWLRDGRRVPVSVPDGCLLVQAGKQLERLTGGHVLAGFHEVAISEATVETIRKRKQAGKSLWRISSTCFCHVASDQARKVLRPLGSFATDEAVSAYPSTTAGDMMQEELRAINLG 670
            G RP +T + +LN  PVVP+ F  W  VM+ WG KM+ A+  +  + A+GLGLEK+A+   +   PHLLAPTGSNF   N +   LAG+HYD NLLTIHGKSR+PGL VWLRDG R  V +PDGCLLVQAGKQ+E LTGG+++AGFHEV +SEAT +TI +RK AGKSLWR+SST F H ASD     L PLG FAT+EA+S YP   AGD +  EL+ I LG
Sbjct:  119 GERPQNTKFAELNAEPVVPKAFPEWESVMNMWGGKMLAAIGVLVEMAAVGLGLEKDALVKRIQNAPHLLAPTGSNFNSFNTLNDVLAGYHYDLNLLTIHGKSRFPGLYVWLRDGTRTAVKIPDGCLLVQAGKQIEYLTGGYLVAGFHEVIVSEATQKTIEERKAAGKSLWRVSSTLFSHTASDVT---LEPLGHFATEEALSKYPPILAGDQVLAELKHIELG 338
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BLAST of mRNA_S-dermatodea_contig12489.1541.1 vs. uniprot
Match: A0A1Y1HUE2_KLENI (2OG-FeII_Oxy domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HUE2_KLENI)

HSP 1 Score: 278 bits (710), Expect = 6.400e-83
Identity = 130/222 (58.56%), Postives = 165/222 (74.32%), Query Frame = 2 
Query:    2 GPRPADTNYQQLNPPPVVPEGFENWSGVMDTWGNKMIGALETVARLCALGLGLEKEAITSLMHEGPHLLAPTGSNFGKHNAVGTALAGFHYDFNLLTIHGKSRYPGLSVWLRDGRRVPVSVPDGCLLVQAGKQLERLTGGHVLAGFHEVAISEATVETIRKRKQAGKSLWRISSTCFCHVASDQARKVLRPLGSFATDEAVSAYPSTTAGDMMQEELRAINL 667
            GPRP  T +Q+LN  PV+P GF  W+ VM+TWG KMI A+E VA + A+G GLE++AIT+LMH+GPHLLAPTGS+  ++   GT  AG+HYD N++TIHGKSR+PGL +WLRDG RVPV VPDGCLL+QAGKQLE LTGG   AG HEVA+SE T++ + + ++ G+SLWR+SST F H+ASD     L+PLG FA       YP   AG+ ++ EL AINL
Sbjct:  138 GPRPGKTRFQELNAEPVIPPGFPEWADVMNTWGRKMIAAVEVVAEMLAIGFGLERDAITNLMHQGPHLLAPTGSDLSRYGK-GTVFAGYHYDLNVMTIHGKSRFPGLFIWLRDGTRVPVKVPDGCLLLQAGKQLEWLTGGECKAGMHEVAVSEQTLQAVERARREGRSLWRVSSTVFGHIASDAN---LQPLGHFADSPTAHLYPPIAAGEFVEAELSAINL 355
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BLAST of mRNA_S-dermatodea_contig12489.1541.1 vs. uniprot
Match: A0A421GPG4_9STRA (2OG-FeII_Oxy domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GPG4_9STRA)

HSP 1 Score: 276 bits (706), Expect = 9.160e-83
Identity = 129/224 (57.59%), Postives = 161/224 (71.88%), Query Frame = 2 
Query:    2 GPRPADTNYQQLNPPPVVPEGFENWSGVMDTWGNKMIGALETVARLCALGLGLEKEAITSLMHEGPHLLAPTGSNFGKHNAVGTALAGFHYDFNLLTIHGKSRYPGLSVWLRDGRRVPVSVPDGCLLVQAGKQLERLTGGHVLAGFHEVAISEATVETIRKRKQAGKSLWRISSTCFCHVASDQARKVLRPLGSFATDEAVSAYPSTTAGDMMQEELRAINLGT 673
            G RP DT +++LN  PV+P+ F  W  +MD WG KM+ A+  +  + A+GLGLEK+A+   +  GPHLLAPTGSNF   N +   LA +HYD NLLTIHGKSR+PGL +WLRDG R  V +PDGCLLVQAGKQ+E LTGG+V AGFHEV +++ T+E I +RK AGKSLWR+SST F H ASD   K L PLG FAT +A++ YP   AG+ + EEL  I LGT
Sbjct:  119 GGRPVDTQFKELNAEPVIPKNFPEWGSIMDMWGGKMLNAITDLVEIVAVGLGLEKDALVDRIKNGPHLLAPTGSNFNVFNQLNDVLAAYHYDLNLLTIHGKSRFPGLYIWLRDGTRTAVKIPDGCLLVQAGKQMEYLTGGYVQAGFHEVVVADTTIEKIEQRKIAGKSLWRVSSTLFSHTASD---KTLEPLGRFATPDALAKYPPILAGNQVLEELSQIELGT 339
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BLAST of mRNA_S-dermatodea_contig12489.1541.1 vs. uniprot
Match: F1A430_DICPU (2OG-FeII_Oxy domain-containing protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F1A430_DICPU)

HSP 1 Score: 274 bits (700), Expect = 6.720e-82
Identity = 131/222 (59.01%), Postives = 163/222 (73.42%), Query Frame = 2 
Query:    2 GPRPADTNYQQLNPPPVVPEGFENWSGVMDTWGNKMIGALETVARLCALGLGLEKEAITSLMHEGPHLLAPTGSNFGKHNAVGTALAGFHYDFNLLTIHGKSRYPGLSVWLRDGRRVPVSVPDGCLLVQAGKQLERLTGGHVLAGFHEVAISEATVETIRKRKQAGKSLWRISSTCFCHVASDQARKVLRPLGSFATDEAVSAYPSTTAGDMMQEELRAINL 667
            G RPADT Y +LN PPV+P  F +W  VMD+WG  M+ + E VA++ A G GL K+ IT++M+ GPHLLAPTGS+  K+  +    AGFHYDFNLLTIHGKSR+PGL +WLRDG RVPV VPDGCLL+QAGKQLE +TGG +LAGFHEV ++EAT+  + K K+A +SLWRISST F HVASD+   +L P   F T+E +  YP+  AG+  QEEL  I L
Sbjct:  124 GDRPADTKYPELNCPPVIPAKFPHWKDVMDSWGGLMLSSCEVVAQMIATGYGLPKDTITNIMNNGPHLLAPTGSDLKKYGNLDQIFAGFHYDFNLLTIHGKSRFPGLYIWLRDGTRVPVKVPDGCLLLQAGKQLEWITGGDILAGFHEVVVTEATLSAVEKAKEAERSLWRISSTLFSHVASDKHLTLLPP---FNTEENLKKYPNILAGEQSQEELEMIKL 342
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BLAST of mRNA_S-dermatodea_contig12489.1541.1 vs. uniprot
Match: A0A0A9IS10_ARUDO (Uncharacterized protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9IS10_ARUDO)

HSP 1 Score: 270 bits (691), Expect = 7.690e-82
Identity = 125/222 (56.31%), Postives = 162/222 (72.97%), Query Frame = 2 
Query:    2 GPRPADTNYQQLNPPPVVPEGFENWSGVMDTWGNKMIGALETVARLCALGLGLEKEAITSLMHEGPHLLAPTGSNFGKHNAVGTALAGFHYDFNLLTIHGKSRYPGLSVWLRDGRRVPVSVPDGCLLVQAGKQLERLTGGHVLAGFHEVAISEATVETIRKRKQAGKSLWRISSTCFCHVASDQARKVLRPLGSFATDEAVSAYPSTTAGDMMQEELRAINL 667
            GPRP +T +++LN  PV+PEG   W   MD+WG+KMI A+E VA + A+G GL K+A TSLM EGPHLLAPTGS+  +H + GT  AGFHYD N LTIHG+SR+PGL++WLR+G+++ V VP GCLL+Q+GKQLE LTGG  LAG HEV +++ T+E I   K+  +SLWR+SST F H+ASD    VL+PLG FA      +YP   AGD +++EL  INL
Sbjct:   31 GPRPVNTRFKELNSEPVIPEGLPEWKETMDSWGSKMISAIEVVAEMAAVGFGLPKDAFTSLMKEGPHLLAPTGSDLQRHGSEGTVFAGFHYDLNFLTIHGRSRFPGLNIWLRNGKKMEVKVPVGCLLIQSGKQLEWLTGGECLAGMHEVVVTKRTLEAIALGKEQNRSLWRVSSTLFAHIASDA---VLKPLGHFAETPNAHSYPPICAGDYVEQELSVINL 249
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BLAST of mRNA_S-dermatodea_contig12489.1541.1 vs. uniprot
Match: H3GBW1_PHYRM (2OG-FeII_Oxy domain-containing protein n=21 Tax=Phytophthora TaxID=4783 RepID=H3GBW1_PHYRM)

HSP 1 Score: 273 bits (699), Expect = 9.720e-82
Identity = 130/224 (58.04%), Postives = 161/224 (71.88%), Query Frame = 2 
Query:    2 GPRPADTNYQQLNPPPVVPEGFENWSGVMDTWGNKMIGALETVARLCALGLGLEKEAITSLMHEGPHLLAPTGSNFGKHNAVGTALAGFHYDFNLLTIHGKSRYPGLSVWLRDGRRVPVSVPDGCLLVQAGKQLERLTGGHVLAGFHEVAISEATVETIRKRKQAGKSLWRISSTCFCHVASDQARKVLRPLGSFATDEAVSAYPSTTAGDMMQEELRAINLGT 673
            G RP  TN+++LN  PV+P+ F  W  VM+ WG KM+ A+  +  + ALGL L+KEA+   +  GPHLLAPTGSNF   N +   LA +HYD NLLTIHGKSR+PGL +WLRDG R  V +PDGCLLVQAGKQ+E LTGG+V AGFHEV ++E+T+ETI +RK AGKSLWR+SST F H ASD   K L PLG FAT E+++ YP   AG  + EEL  I LG+
Sbjct:  119 GERPVSTNFEELNAEPVIPKTFPEWENVMNMWGGKMLDAITDLVEIVALGLDLKKEALVDRIKYGPHLLAPTGSNFNVFNQLNDVLAAYHYDLNLLTIHGKSRFPGLYIWLRDGTRTAVKIPDGCLLVQAGKQMEYLTGGYVQAGFHEVVVAESTLETIAQRKNAGKSLWRVSSTLFSHTASD---KTLEPLGRFATPESMAKYPPILAGSQVLEELSKIELGS 339
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12489.1541.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCB5_ECTSI4.020e-12683.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A2V0P8E6_9CHLO1.640e-8864.132-oxoglutarate (2OG) and Fe(II)-dependent oxygenas... [more]
A0A7S2S0B3_9STRA5.340e-8562.61Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
W2XKW3_PHYPR1.580e-8458.932OG-FeII_Oxy domain-containing protein n=1 Tax=Phy... [more]
A0A8K1FF67_PYTOL4.670e-8359.19Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A1Y1HUE2_KLENI6.400e-8358.562OG-FeII_Oxy domain-containing protein n=1 Tax=Kle... [more]
A0A421GPG4_9STRA9.160e-8357.592OG-FeII_Oxy domain-containing protein n=3 Tax=Phy... [more]
F1A430_DICPU6.720e-8259.012OG-FeII_Oxy domain-containing protein n=1 Tax=Dic... [more]
A0A0A9IS10_ARUDO7.690e-8256.31Uncharacterized protein n=1 Tax=Arundo donax TaxID... [more]
H3GBW1_PHYRM9.720e-8258.042OG-FeII_Oxy domain-containing protein n=21 Tax=Ph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12489contigS-dermatodea_contig12489:173..6459 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score339.0
Seed ortholog evalue1.5e-90
Seed eggNOG ortholog2880.D8LCB5
EggNOG free text desc.dioxygenase activity
EggNOG OGs2QR0G@2759,COG3491@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons10
Model size2261
Cds size591
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12489.1541.1prot_S-dermatodea_contig12489.1541.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12489 258..2938 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924249.6385949-UTR-S-dermatodea_contig12489:172..2571622924249.6385949-UTR-S-dermatodea_contig12489:172..257Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12489 173..257 +
1694079124.398879-UTR-S-dermatodea_contig12489:172..2571694079124.398879-UTR-S-dermatodea_contig12489:172..257Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12489 173..257 +
1622924249.7108731-UTR-S-dermatodea_contig12489:2938..40581622924249.7108731-UTR-S-dermatodea_contig12489:2938..4058Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12489 2939..4058 +
1694079124.4683442-UTR-S-dermatodea_contig12489:2938..40581694079124.4683442-UTR-S-dermatodea_contig12489:2938..4058Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12489 2939..4058 +
1622924249.7199166-UTR-S-dermatodea_contig12489:4614..47491622924249.7199166-UTR-S-dermatodea_contig12489:4614..4749Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12489 4615..4749 +
1694079124.4843125-UTR-S-dermatodea_contig12489:4614..47491694079124.4843125-UTR-S-dermatodea_contig12489:4614..4749Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12489 4615..4749 +
1622924249.727352-UTR-S-dermatodea_contig12489:5383..55001622924249.727352-UTR-S-dermatodea_contig12489:5383..5500Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12489 5384..5500 +
1694079124.49747-UTR-S-dermatodea_contig12489:5383..55001694079124.49747-UTR-S-dermatodea_contig12489:5383..5500Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12489 5384..5500 +
1622924249.7347276-UTR-S-dermatodea_contig12489:5977..60521622924249.7347276-UTR-S-dermatodea_contig12489:5977..6052Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12489 5978..6052 +
1694079124.5083134-UTR-S-dermatodea_contig12489:5977..60521694079124.5083134-UTR-S-dermatodea_contig12489:5977..6052Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12489 5978..6052 +
1622924249.7445972-UTR-S-dermatodea_contig12489:6321..64591622924249.7445972-UTR-S-dermatodea_contig12489:6321..6459Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12489 6322..6459 +
1694079124.5245342-UTR-S-dermatodea_contig12489:6321..64591694079124.5245342-UTR-S-dermatodea_contig12489:6321..6459Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12489 6322..6459 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924249.650357-CDS-S-dermatodea_contig12489:257..2781622924249.650357-CDS-S-dermatodea_contig12489:257..278Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12489 258..278 +
1694079124.4109952-CDS-S-dermatodea_contig12489:257..2781694079124.4109952-CDS-S-dermatodea_contig12489:257..278Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12489 258..278 +
1622924249.6606266-CDS-S-dermatodea_contig12489:661..7731622924249.6606266-CDS-S-dermatodea_contig12489:661..773Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12489 662..773 +
1694079124.4195058-CDS-S-dermatodea_contig12489:661..7731694079124.4195058-CDS-S-dermatodea_contig12489:661..773Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12489 662..773 +
1622924249.6734462-CDS-S-dermatodea_contig12489:1077..12041622924249.6734462-CDS-S-dermatodea_contig12489:1077..1204Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12489 1078..1204 +
1694079124.4295993-CDS-S-dermatodea_contig12489:1077..12041694079124.4295993-CDS-S-dermatodea_contig12489:1077..1204Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12489 1078..1204 +
1622924249.6815276-CDS-S-dermatodea_contig12489:1558..16581622924249.6815276-CDS-S-dermatodea_contig12489:1558..1658Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12489 1559..1658 +
1694079124.4392107-CDS-S-dermatodea_contig12489:1558..16581694079124.4392107-CDS-S-dermatodea_contig12489:1558..1658Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12489 1559..1658 +
1622924249.6896904-CDS-S-dermatodea_contig12489:1963..20801622924249.6896904-CDS-S-dermatodea_contig12489:1963..2080Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12489 1964..2080 +
1694079124.4491506-CDS-S-dermatodea_contig12489:1963..20801694079124.4491506-CDS-S-dermatodea_contig12489:1963..2080Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12489 1964..2080 +
1622924249.7003891-CDS-S-dermatodea_contig12489:2824..29381622924249.7003891-CDS-S-dermatodea_contig12489:2824..2938Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12489 2825..2938 +
1694079124.4587374-CDS-S-dermatodea_contig12489:2824..29381694079124.4587374-CDS-S-dermatodea_contig12489:2824..2938Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12489 2825..2938 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12489.1541.1

>prot_S-dermatodea_contig12489.1541.1 ID=prot_S-dermatodea_contig12489.1541.1|Name=mRNA_S-dermatodea_contig12489.1541.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=197bp
MDTWGNKMIGALETVARLCALGLGLEKEAITSLMHEGPHLLAPTGSNFGK
HNAVGTALAGFHYDFNLLTIHGKSRYPGLSVWLRDGRRVPVSVPDGCLLV
QAGKQLERLTGGHVLAGFHEVAISEATVETIRKRKQAGKSLWRISSTCFC
HVASDQARKVLRPLGSFATDEAVSAYPSTTAGDMMQEELRAINLGT*
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mRNA from alignment at S-dermatodea_contig12489:173..6459+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12489.1541.1 ID=mRNA_S-dermatodea_contig12489.1541.1|Name=mRNA_S-dermatodea_contig12489.1541.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=6287bp|location=Sequence derived from alignment at S-dermatodea_contig12489:173..6459+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGGTCCCCGTCCTGCCGACACCAACTACCAGCAACTCAACCCTCCCCCCG
TTGTCCCGGAGGGTTTCGAGAATTGGAGCGGGGTCATGGACACGTGGGGA
AATAAGGTCAGCAAAGATTCAGACGCAGGCATGTTTGTTGTAATAGCCAT
TTTGTGAGGAAGTGAGGGCGGATTTGGGTTTGGCGCGTGTGAAGCTGTAG
TTCGTTCGGTACCATCCCAAGCGAGCTCTCACCTCCCTCTCGAGGAATAG
AGTCGTCTGGTGCAATAGCGCTGCCTGACTTGTGACCGGTACGCCGGTTG
CGCGTAGCCTTGTGGTTTCCGAGGGAGATGCCTTGTCTCACCGCTGGTTA
TCACAGCCCATCGTCGAGAGGCGTTAGCGCAAACGCGAAAGTAGGATCGT
CTACGGCTGTTGTGGCCCCTATCCATGCACTGCAGCAGCCCGCGAAAACG
CTCTCTCTCGTGGGTGCCCTTGGGTGCTGAGTTCATCAGATGATCGGCGC
GCTGGAAACGGTAGCACGGCTGTGCGCCCTGGGTCTCGGGCTCGAGAAAG
AGGCGATCACGTCTCTCATGCACGAGGGACCTCACCTTCTTGCGCCCACC
GGTGAGGGGGTATGTCGGCTGCACAGGCAGCACCGCTTTATCAAACCCTC
ACGAACGGCTCGCAGCGCGTGTTTTTCGGGCTCGACAAACGGAGTGGCGG
ATCGGGACTGCGAGAGAGGGCATTTCGTAATGTTCCGATGGCCGCTTCGA
GAGCAGTCGTTACTTCTGGGTGTTGTGTGTGGCCGGTACGAACAATTCAC
GTGCGATTATAATAGTTCAAGCAAGGAAGGCATTGGCGACCTACTGCTAT
AAGTATAGGGACACAACTGACGTTGTATCTCGCGACCGTTGGCGTTTTGA
TGCAGGCTCGAACTTCGGAAAGCACAATGCGGTAGGAACCGCGTTGGCAG
GCTTTCATTACGACTTCAACCTCCTGACGATTCACGGCAAGAGCCGTTAT
CCTGGGCTGTCTGTGTGGCTGCGAGACGGCAGGTGCGTTTTGCGACCCGG
GTGGGCTTTCGCAATCGATGAAATGCTTTCATGCCTAGAAAACCCGTTGC
AGAGCCAATGCGTGGGTGCGATTCCCTCGTGTGTGTACCACACCGCACTG
TGTGTGTGTGTCAGTGTTGCGCTGGAAGCGTCAGTTGATGGCATCTGCGT
GACCTTGTTGATTGTGTGCTATTTACATCCATCTCTCTGGACTACGCAAG
GGTGATGATCCCCCCTCGGGCGAGGCATGCACTCAATACTGTATGTGGTT
GAAGGGTCGTACCTCAGCGTCGAGATGCTCCCACTGGCACCCCCTCCCAA
CGATGCTCTGCGCGGTTTTGTCGTGCGCTTCCACAGACGGGTGCCCGTTT
CTGTGCCCGATGGATGCCTGCTGGTGCAGGCCGGCAAGCAGTTAGAGAGA
CTCACGGGCGGGCACGTCTTGGCAGGGTTCCATGAGGTGCGATCGGTCGG
ATCGGGCTGATACAAGTGAGCTGTTGTATGCATATCAACAAAGCGGTACC
ATCAAGGCTTTTAAATGGTACCAGGTATACACGTCTGGCGTATGAGATTT
CCAGGTGCGCTGAATCCCTTGAATATTTTCGTGTTCGTGCACACGAAAAG
CTCATCGTGCTCTGCTGTATAAGAACCCCCTCTGGCTTTCACATCTGGTG
GCGAAATAATACCGCTGTTACCCGGCGATTTGCCATCAAAGCGCACGGTG
TGCTCATCCCGCCATCACTCGTCGACACACCCGTAACACAGGTGGCAATA
TCCGAGGCGACGGTGGAGACCATCCGGAAGCGCAAGCAGGCGGGCAAGTC
TCTGTGGAGAATATCATCCACCTGTTTCTGCCACGTAGCTTCCGATCAGG
CGCGTAAAGTCCTATCATGCCATGCTTGGTTGTTGCCGTCGTCCCTTACG
TGGATGCAAGCGGGGAAAACACGAGTCACCATGGATGGTAGCGATTTGGG
TTGCTGTACCCTGTCGTCAGGTCGACTCCAGCGATCGACAGACCGCCAAG
CGAGCGTGCGGCCGACCCCGCCATTTCGCGAATTTGGGGCAGCGGCGAAC
GTTGTTTTACTTTATACTTGCTGGATTTTCTCCGTTACGAGGTCATGGCA
CACGCGCCAGTCACACATCAAAAGAGGGCGACAAAGCGCCAGCGCGAGAA
ACGGGTTGTGCCACTTCCCTATTCCAAACGAAGCGATGATGTCGGCGCTA
AACTGTTCTATTCACTGTCTTGTTTCGTTGCAACACGAATTTTCCGTACA
AGTTTTTCCGATATCTCGATTTCTCATATGACCACGAGTGGGATTCGGTA
GCCATTGGCGGGCCGGGCGCTCGTAATGTGTGTGTGTGCTTTGTTTTTGG
CACACATATGATAGATAGACTTACTTTTCCGAGGCCCGTCTGTGGTCACA
AGGGATCATCCCATCTCTCCCCGGTTCTCACCTTTGTTTTTTTTCGCGCA
TTGTGTTCGGCTCTCCCGCAGCTCGCCATTTTCTCGGATTTTGCTTACTC
ACGCTCTCGCGCTTTCCGCAGCGGAGGTAGAGAATTGGGATGTGATAAAT
CAATCAATCAACACAAATACTGTTACACGTCATGGTATATTTTTGTGCGC
AGGTGCTTCGCCCACTTGGGAGTTTCGCCACGGACGAGGCTGTCTCCGCG
TACCCTTCGACGACGGCCGGCGACATGATGCAGGAGGAGCTGCGGGCGAT
TAATCTCGGAACCTAATCCGCCGCTCTCGTGCTGCGCGGTATCAGTAGCT
TCAAGTGTGTTGCGATAATGGTTAAGCACGGGCCAATCAACAAGCGGTTG
ACTGCTGTTAGTCCAGTGTGCGCCACGATTTAGAAACCGTAGTCCGAGGT
TCAATTCCCGCGGATGCCTTGCTTCTCGCCTTTTTGTCAGGCAAACGCAA
GAAGAGGCAAAATACGAAGAGGATTCGCGATTCCTCCCCCCGTGGCTGGT
TTCCGTCGTGGCTGGGAGTAGCGCTGGTTTGAGGGATGTACAACCCTCTG
ATACGCCCGAGGTCCTGGCATGGCTGAACTGCTATGGCGGGCCTCGGAGC
TTGTAATGAGGCGTCGCACAAGTATTGCAGTCAGCGCGTCTTTGTCGCTT
ACTTCGAGAAAAACAAGGAAATTCAGTTAGAAATTGTATGCATGCCGCTG
TGTGCAAACGCCGACCTATAATTCTACATATAACATGCTTTTGGAGCGAG
TGCCACCTGTGATAGTTTCTTCATGCTGGCAGGGCGGCCGGTAAGCACCA
GTTGTGAGCCTTGAATCGAGGTGTCGGGTATAATAGCTGTGCGGGAGAGC
CCTGCGGCCGAATATAGCACCGAGATATATCTGCCGTCTGTGCATGCCAA
CACCCCAAGCGCGCCCTGAGGTCGGTTTGGGCACCCAAACCCGGTGTCGT
ACCTCCAGCTTCAGGGATGACACATGTCGGGGGGGAATATTACAATAGCC
ACAGGGTGCACCGACAGCACAATGTCCAGCAACAAAAACCTGTCTGGTTA
TTAACTCCCTTCACACTTGGGCCGCATCCGCCCCCACTGTCGCGCAAACA
CCGCGGCCCACAAGGTCTCATACGCCACCCTTTTCTGATGCACCAAGTCA
CGAACTTGTATCGGGGAACGCACATGGCACGCCCTGAGCGGGGTAATTGT
ACTTTCTCTTATGGCTTGAAGCCTAGCCCATGCTGCCGGAATAGTTGGTG
TCCTGTGGCCACCCCCCTTGTCGACGCAACCGCTGCCCTCGATGATCACC
GGCGTTGCTCCCTTGCGGTGGCCCAGGTTTCGCCGAGTCCCGTCGCCGCC
GCTGATCACCCCGGGATGATCCATTGGTTGGCGGGTCCTGCGAGACGGCA
TGAGTTTTCTTCGTTTTGTTTTGGCTTCGTAAGGTTCAGCGCTCGTTGCC
GCTGCTGATGCTCCAAAATAGACATGATAACAAAATGGAATTGCCATGTC
ACGGATGATGCGCGGGCGCTGCACCACCCAAAAAACAACCTGTTTTGCTT
GCACCGCGTGCGTGGCGGAACAGCATCGGACTCGTTCGTTTTTTGTTTTT
TGCCTTACAATCACGCGCGTGCGGGAGAAGGGTGGTAACGCTCTAGGCGG
GGTAAAAGTGCCCCACGGCACGTTCGTTTTGCTGCGCCGGTGTTAAGCGA
CACGCGTACGTATGACACACCCGCCACTGGTCAAAAGCTGCCAATGGCTA
AATAGGATTCCCACATTGCCTCTGCAGTGTGCATACTCTGGGGCAAGGTG
CAGCGGACACAGCTGCCACTGGAAAAACGCCCCCTTGATTCCCAGACCGG
TTTGCGCGGTGTTATAATGCAAAATAATTAAAACGGAAAGGAGCGAGTTA
CGAAGCTTCCTCTGCCTACTCGAACTGCTGTACATACAAACACCTGGTTC
GTGTAGAGTAGCCTATTGACCGTTGACATGTCGATGTCACCGATGTTGGG
CACGCGACTTGTGCTGTCCGGTGATCCATCCTCTTCCCACATGGAAGATC
TGTCCACCACTGGCTTCGAGTGCATGTCTGACACAAACGGGGGAAAAGTG
ACCAACGATCAACAACAGTGGAGAGGCTCCTCTTTCTCACTCTATATTTC
ACAAATACGCCTTGTTTGTGACACGATCACGTTGGAGCTTGCGCCGAAGA
CCAGCTGGAATAGGGCTGCTTTTGCCTCCACACGGGCGGCGCCATCGGTT
TGCGCTGCCGAGACGCGTCGCTCCCATCCTACCCAGCGAGCGCGAGCTCT
AGCGTGACACGGTATACCGAGGTCCATTTGCTTGTTCCCGCGAACCGCAA
CCTTAACCTTCACGCGTCCGTCGCTTGCGGAAAATACACAAAATATGTGT
TGTCGGTTGTCGGGGCACCTTACACCGACTTTGGCTTCATCTAGACATGT
CAGCGATCGCAAGAGGGCCGCACAACAACAATCCAAAACAACACACACAA
GGAGCATATAGGTCGTCCTTGGGAGCCGCACAAAAAGTCGCGAGAGTCTC
CCCATTCGTTCAAGCCAAGCAAGGGCGGGCCGGGAATAGCACACGCGGCA
AAGCGCACCTATCCAGGGTTCAGCGGTGAACCTATTAATATTTACTATTA
TACTTCGAAGTATTTACTATCAAGTGATAGAAGGGTTCGAATGTGTGCTG
TGTGGTAACACCTGTGATGGTGTCGAACGAGTCCAATGGGGCGGTGCTCA
TGAAGTTGACGGCTATGTACACGAGGACAGCAACCGAGGCTGTGACGAAG
GTTGCGCTCGGAATGGCGATCGCCCAGTACCTGGTATTGGTCGGAAAGGC
GTGTGTCGAAGAGAGGTTGGTTTGTCTCGTGTTGCAACAACAAACGACCA
GCAGTAGATTGTATGTATTACTTACTACTGGTCTTGTCCTGTGTTGGGTT
GGCCGCAGGCCACGCACTACTTGTACCTGGGGAAGCACGAAACGCTTTGT
AGCACACAAACATCGCCAACGAAGCGAATCCGCATCATCACAACTGCGCC
ACAGATGCGATGCTGCGGTTGCTTGGAGGGCTGGGTGGTCTACGAGGTAC
CGGTACTAAACTACGCTGTCTTACCAATGCCCATGTACAAACAAGAACAT
TGCAACGGAGCCGGGCTGGATACTCGTGATGGCTCGTCCACAGGACTGCG
GATGGTTCGTGGATACTGGGAGACAAATGTACATCTCCCAAGGCCTACGT
CAACAACAACAGTAGCAGCAGGACACGAGCGAGCGCATTTAAAGGCATCG
AACTCACTTGCTAGGGTAGTACGTGATGCCCACCGCGTGGAGCGTGCTCT
CTGGAACATAAGCCCACACAAGGTAGAGGGCTGCTCGACGCGATAATCAT
GCCGCACAAGACAATTGCGTTGGAGAGATAACGAAGAAGAAGCATAGGGA
GGTCAGCGCGGCGCGCACACAAACTCAAACCCCTTCGCGAAGCCCTCCAG
CCGATTACCACAGAGCAGCGGCAACGAGCAACAGAGTCAACAGCTATGAA
AACAAAAAGCAATGCGACGGCGAGTGCAAAAAAATGCGGCGGAACTAAAA
AAACAGGACGAGCTAGAGCGTCGCGATTGCTTGGTGTTGGCTGGCTCACC
ATACGCAACCAGGCTGGCAATCCAGCCCGCAAACCCGTAGACTTCCACGA
TCTCCCCTCCCCCCTCCTTTCGTCGCCTAGGGAGAGGGTCCATCGCGTGA
CAGACAAGGGCCGTGTCGAGCGTGCGTTTTGGGTTGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig12489:173..6459+

>mRNA_S-dermatodea_contig12489.1541.1 ID=mRNA_S-dermatodea_contig12489.1541.1|Name=mRNA_S-dermatodea_contig12489.1541.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1182bp|location=Sequence derived from alignment at S-dermatodea_contig12489:173..6459+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGACACGTGGGGAAATAAGATGGACACGTGGGGAAATAAGATGATCGG
CGCGCTGGAAACGGTAGCACGGCTGTGCGCCCTGGGTCTCGGGCTCGAGA
AAGAGGCGATCACGTCTCTCATGCACGAGGGACCTCACCTTCTTGCGCCC
ACCGATGATCGGCGCGCTGGAAACGGTAGCACGGCTGTGCGCCCTGGGTC
TCGGGCTCGAGAAAGAGGCGATCACGTCTCTCATGCACGAGGGACCTCAC
CTTCTTGCGCCCACCGGCTCGAACTTCGGAAAGCACAATGCGGTAGGAAC
CGCGTTGGCAGGCTTTCATTACGACTTCAACCTCCTGACGATTCACGGCA
AGAGCCGTTATCCTGGGCTGTCTGTGTGGCTGCGAGACGGCAGGCTCGAA
CTTCGGAAAGCACAATGCGGTAGGAACCGCGTTGGCAGGCTTTCATTACG
ACTTCAACCTCCTGACGATTCACGGCAAGAGCCGTTATCCTGGGCTGTCT
GTGTGGCTGCGAGACGGCAGACGGGTGCCCGTTTCTGTGCCCGATGGATG
CCTGCTGGTGCAGGCCGGCAAGCAGTTAGAGAGACTCACGGGCGGGCACG
TCTTGGCAGGGTTCCATGAGACGGGTGCCCGTTTCTGTGCCCGATGGATG
CCTGCTGGTGCAGGCCGGCAAGCAGTTAGAGAGACTCACGGGCGGGCACG
TCTTGGCAGGGTTCCATGAGGTGGCAATATCCGAGGCGACGGTGGAGACC
ATCCGGAAGCGCAAGCAGGCGGGCAAGTCTCTGTGGAGAATATCATCCAC
CTGTTTCTGCCACGTAGCTTCCGATCAGGCGCGTAAAGTGGCAATATCCG
AGGCGACGGTGGAGACCATCCGGAAGCGCAAGCAGGCGGGCAAGTCTCTG
TGGAGAATATCATCCACCTGTTTCTGCCACGTAGCTTCCGATCAGGCGCG
TAAAGTGCTTCGCCCACTTGGGAGTTTCGCCACGGACGAGGCTGTCTCCG
CGTACCCTTCGACGACGGCCGGCGACATGATGCAGGAGGAGCTGCGGGCG
ATTAATCTCGGAACCTAAGTGCTTCGCCCACTTGGGAGTTTCGCCACGGA
CGAGGCTGTCTCCGCGTACCCTTCGACGACGGCCGGCGACATGATGCAGG
AGGAGCTGCGGGCGATTAATCTCGGAACCTAA
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