mRNA_S-dermatodea_contig12488.1540.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig12488.1540.1 vs. uniprot
Match: A0A6H5JQ44_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ44_9PHAE) HSP 1 Score: 218 bits (554), Expect = 1.770e-63 Identity = 97/186 (52.15%), Postives = 125/186 (67.20%), Query Frame = 2
Query: 2 RVLSEGVMKDSAMTPEVCNAYCEGEGGYLYYAVEFGGECWCGGAYVDYSRLGALEDTSCNNQCTGDASLMCGGRDAFNIYQYETVNQPEGYLGCYTDSKNDRMFNFAAKDLPDLSVASCKALCDGYPFYGLQYGDECFCGLQSEDYTALGVSNACDMRCTGEATDICGGRNAMSVFAQDVTATTPP 559
RVL G+M S MTP+VC AYC +G Y +Y V++G ECWCG A +Y RLGALE + C+ CTGDAS CGG D+F ++ ++QPEGYLGC+ DS++ R+F+ + +CKA C G+ +YGLQY +ECFCGL EDYT LG S+AC RC+G+ CGG NAM VFA D T+PP
Sbjct: 63 RVLQSGLMGQSDMTPDVCAAYCLDKGSYTFYGVQYGQECWCGRAGTEYDRLGALEMSECDYPCTGDASSTCGGFDSFQAFELGALDQPEGYLGCFVDSQSSRLFSAPLVASASNTAETCKATCAGFAYYGLQYSEECFCGLAEEDYTRLGTSDACGYRCSGDVLSTCGGFNAMDVFAMDAGVTSPP 248
BLAST of mRNA_S-dermatodea_contig12488.1540.1 vs. uniprot
Match: D7FLJ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLJ3_ECTSI) HSP 1 Score: 211 bits (538), Expect = 5.260e-60 Identity = 96/183 (52.46%), Postives = 125/183 (68.31%), Query Frame = 2
Query: 23 MKDSAMTPEVCNAYCEGEGGYLYYAVEFGGECWCGGAYVDYSRLGALEDTSCNNQCTGDASLMCGGRDAFNIYQYETVNQPEGYLGCYTDSKNDRMFNFAAKDLPDLSVASCKALCDGYPFYGLQYGDECFCGLQSEDYTALGVSNACDMRCTGEATDICGGRNAMSVFAQDVTATTPPAATP 571
M+ S MTP+VC AYC EG Y +Y V++G ECWCG + +Y RLGALE + C+ CTGDASL CGG D+F+ ++ +++PEGYLGC+ DS++ R+F+ + +CKA C G+ +YGLQY +ECFCGL EDYT LG S+AC RCTG+ CGG NAM VFA D T+PPA P
Sbjct: 1 MRQSDMTPDVCAAYCLDEGTYTFYGVQYGQECWCGTSGTEYDRLGALEMSECDYPCTGDASLSCGGFDSFHAFELGALDKPEGYLGCFVDSQSSRLFSNPFVASASNTAETCKATCAGFAYYGLQYSEECFCGLADEDYTRLGTSDACGYRCTGDVLSTCGGFNAMDVFAMD-DVTSPPATAP 182
BLAST of mRNA_S-dermatodea_contig12488.1540.1 vs. uniprot
Match: D7FLI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLI8_ECTSI) HSP 1 Score: 180 bits (456), Expect = 7.610e-49 Identity = 86/182 (47.25%), Postives = 115/182 (63.19%), Query Frame = 2
Query: 2 RVLSEGVMKDSAMTPEVCNAYCEGEGGYLYYAVEFGGECWCGGAYVDYSRLGALEDTSCNNQCTGDASLMCGGRDAFNIYQYETVNQPE-----GYLGCYTDSKNDRMFNFAAKDLPDLSVASCKALCDGYPFYGLQYGDECFCGLQSEDYTALGVSNACDMRCTGEATDICGGRNAMSVFA 532
RVL + +M + +TP+ C +C EG Y +Y +++G ECWCG A DY RLG+L+ + C CTGDAS CGG AF ++ + NQP GYLGCY D ++ R+F+ L D + SCKA C GY +YGLQYG++CFCG EDYT G S+ C + CTG+A+ CGG AM V+A
Sbjct: 62 RVLEQELMDQTDLTPDTCALHCYSEG-YQFYGLQYGQECWCGVAGTDYDRLGSLDMSECAYPCTGDASSTCGGYLAFQAFELGSQNQPTTAPPTGYLGCYADDRS-RIFSALHVTLTDNNAESCKASCVGYAYYGLQYGEQCFCGTADEDYTVYGESDNCVLSCTGDASSTCGGSWAMDVYA 241
BLAST of mRNA_S-dermatodea_contig12488.1540.1 vs. uniprot
Match: D8LDE3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDE3_ECTSI) HSP 1 Score: 173 bits (439), Expect = 1.250e-46 Identity = 82/177 (46.33%), Postives = 107/177 (60.45%), Query Frame = 2
Query: 2 RVLSEGVMKDSAMTPEVCNAYCEGEGGYL-YYAVEFGGECWCGGAYVDYSRLGALEDTSCNNQCTGDASLMCGGRDAFNIYQYETVNQPEGYLGCYTDSKNDRMFNFAAKDLPDLSVASCKALCDGYPFYGLQYGDECFCGLQSEDYTALGVSNACDMRCTGEATDICGGRNAMSVF 529
R L+ G M MTP +CN YC G+ Y +YAV++G ECWCG DY++LGAL+ T C CTGD L CGG D+F I+ +G+LGCY D ++DR+F L + V +C+A C G P +GLQYG EC+CG + EDYT G S CD C G CGG +AM++F
Sbjct: 759 RRLAMGPMSSRDMTPTLCNEYCAGQ--YASFYAVQYGRECWCGDDSTDYAKLGALDMTECAYPCTGDGDLTCGGFDSFEIFSLPAETS-QGHLGCYADEQDDRLFRADKIRLDENGVEACRAACSGSPLFGLQYGRECWCGTEDEDYTKHGASTDCDYPCRGNEDYTCGGFDAMNIF 932
BLAST of mRNA_S-dermatodea_contig12488.1540.1 vs. uniprot
Match: D7FTD7_ECTSI (WSC domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTD7_ECTSI) HSP 1 Score: 151 bits (382), Expect = 7.580e-41 Identity = 72/178 (40.45%), Postives = 100/178 (56.18%), Query Frame = 2
Query: 2 RVLSEGVMKDSAMTPEVCNAYCEGEGGYLYYAVEFGGECWCGGAYVDYSRLGALEDTSCNNQCTGDASLMCGGRDAFNIYQYETVNQP-EGYLGCYTDSKNDRMFNFAAKDLPDLSVASCKALCDGYPFYGLQYGDECFCGLQSEDYTALGVSNACDMRCTGEATDICGGRNAMSVFA 532
R++ + + D +MT E+C C G Y+A ++G ECWCG A +DY+ G E T C C GDA CGG DA N+Y Y + ++GCY D R+ A D +S+ C+A C G ++GLQYG ECFCG S D G S+AC+ C G++ +CGG AMSV++
Sbjct: 217 RIMDDLALSDYSMTTELCELTCLGS---TYFATQYGRECWCGSADMDYALHG--ESTDCTYACAGDADQTCGGFDAANVYSYTDESTAISAFVGCYQDESGSRIMELALTDSSSMSMEMCEAKCRGNTYFGLQYGRECFCGGSSTDLLEHGESSACNYECPGDSDQVCGGFYAMSVYS 389
BLAST of mRNA_S-dermatodea_contig12488.1540.1 vs. uniprot
Match: D7FUE8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUE8_ECTSI) HSP 1 Score: 143 bits (361), Expect = 3.230e-40 Identity = 69/166 (41.57%), Postives = 94/166 (56.63%), Query Frame = 2
Query: 38 MTPEVCNAYCEGEGGYLYYAVEFGGECWCGGAYVDYSRLGALEDTSCNNQCTGDASLMCGGRDAFNIYQYETVNQP-EGYLGCYTDSKNDRMFNFAAKDLPDLSVASCKALCDGYPFYGLQYGDECFCGLQSEDYTALGVSNACDMRCTGEATDICGGRNAMSVFA 532
MT E+C C G Y+A ++G ECWCG A +DY+ G E T C C G+A CGG DA N+Y+Y + P ++GCY D + RM A D ++ C+A C G ++G+QYG ECFCG S + G S+ACD C G++ CGG AMSV++
Sbjct: 1 MTTELCELTCLGS---TYFATQYGRECWCGSAGMDYALHG--ESTDCTYGCAGNADQTCGGFDAANVYRYTNESTPTSSFVGCYQDESDARMMELALTDSSSMTKEMCEAECTGNRYFGMQYGSECFCGGSSTNLLENGESSACDYECPGDSEQECGGFYAMSVYS 161
BLAST of mRNA_S-dermatodea_contig12488.1540.1 vs. uniprot
Match: D7FUE6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUE6_ECTSI) HSP 1 Score: 152 bits (384), Expect = 2.970e-39 Identity = 72/178 (40.45%), Postives = 102/178 (57.30%), Query Frame = 2
Query: 2 RVLSEGVMKDSAMTPEVCNAYCEGEGGYLYYAVEFGGECWCGGAYVDYSRLGALEDTSCNNQCTGDASLMCGGRDAFNIYQYETVNQP-EGYLGCYTDSKNDRMFNFAAKDLPDLSVASCKALCDGYPFYGLQYGDECFCGLQSEDYTALGVSNACDMRCTGEATDICGGRNAMSVFA 532
R++ + + D +MT E+C C G Y+A ++G ECWCG A V+Y+ G E T C C GDA CGG DA N+Y+Y + P ++GCY D + R+ A D ++ C+A C G F+G+QYG ECFCG S D G S+AC+ C G++ +CGG AMSV++
Sbjct: 644 RIMDDLALSDYSMTTELCEQTCLGN---TYFATQYGRECWCGSAGVEYALHG--ESTDCTYACAGDADQTCGGFDAANVYRYTDESTPTSSFVGCYQDESDARIMELALTDSSSMTKEMCEAECTGNTFFGMQYGRECFCGGSSTDLLEHGESSACNYECPGDSDQVCGGFYAMSVYS 816
BLAST of mRNA_S-dermatodea_contig12488.1540.1 vs. uniprot
Match: D8LEL0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEL0_ECTSI) HSP 1 Score: 130 bits (327), Expect = 9.140e-34 Identity = 64/181 (35.36%), Postives = 92/181 (50.83%), Query Frame = 2
Query: 20 VMKDSAMTPEVCNAYCEGEGGYLYYAVEFGGECWCGGAYVDYSRLGALEDTSCNNQCTGDASLMCGGRDAFNIYQYETVNQPEGY-----------LGCYTDSKNDRMFNFAAKDLPDLSVASCKALCDGYPFYGLQYGDECFCGLQSEDYTALGVSNACDMRCTGEATDICGGRNAMSVF 529
V+ D++MT E+C C G +Y+A ++G ECWCG DY+ G E T C C+GDA CGG DA N+Y+Y + P LGCY D + R+ + ++ C+ C G ++ QYG EC+CG DY G S C C+G+A +CGG +A +V+
Sbjct: 5 VLSDASMTTELCEQTCVGS---IYFATQYGRECWCGSVGADYTVHG--ESTDCTYACSGDADQTCGGFDAANVYRYTDDSTPSXXXXXTEAAPFVALGCYGDDREARIMDDLVLSDSSMTTELCELTCLGSTYFATQYGRECWCGSDGADYALHGESTECTYPCSGDADQLCGGFDAANVY 180
BLAST of mRNA_S-dermatodea_contig12488.1540.1 vs. uniprot
Match: A0A6H5KL84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL84_9PHAE) HSP 1 Score: 123 bits (309), Expect = 1.230e-31 Identity = 68/169 (40.24%), Postives = 88/169 (52.07%), Query Frame = 2
Query: 38 MTPEVCNAYCEGEGGYLYYAVEFGGECWCGGAYVDYSRLGALEDTSCNNQCTGDASLMCGGRDAFNIYQYET-VNQPEGYLGCYTDSKNDRMFNFAAKDLPDLSVAS-CKALCDGYPFYGLQYGDECFCGLQSEDYTALGVSNACDMRCTGEATDICGGRNAMSVFAQD 538
MT VC+ +C Y YY ++ ECWCG DY GA + C C GDAS CGG + ++YQ E + Y GCY+D +R+F D D A C A CD FYG QY EC+CG + Y+ GV CDM C+G + + CGG +M V+AQD
Sbjct: 36 MTKAVCSDHCSA---YPYYGTQYSVECWCGDENADYDANGASNE--CVMPCAGDASETCGGSYSMSVYQNEVEIPVDPAYRGCYSDPGTNRVF--VQDDSSDEMTAEVCAAQCDESAFYGTQYSRECWCGDINAQYSVNGVG-VCDMPCSGNSEESCGGSYSMDVYAQD 196
BLAST of mRNA_S-dermatodea_contig12488.1540.1 vs. uniprot
Match: D7FRS1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRS1_ECTSI) HSP 1 Score: 130 bits (327), Expect = 1.550e-31 Identity = 67/188 (35.64%), Postives = 93/188 (49.47%), Query Frame = 2
Query: 2 RVLSEGVMKDSAMTPEVCNAYCEGEGGYLYYAVEFGGECWCGGAYVDYSRLGALEDTSCNNQCTGDASLMCGGRDAFNIYQYETVNQPEGY------------LGCYTDSKNDRMFNFAAKDLPDLSVASCKALCDGYPFYGLQYGDECFCGLQSEDYTALGVSNACDMRCTGEATDICGGRNAMSVF 529
R++ + + D+AMT E+C C G +Y+A ++G ECWCG A DY G E C C GDA CGG DA N+Y Y+ + P LGCY D + DR+ + A ++ C+ C G ++ QYG EC+CG DY G S C C G+A CGG +A +V+
Sbjct: 646 RIMDDLALSDNAMTTELCEQTCLGN---IYFATQYGQECWCGSAGADYILHG--ESADCTYACAGDADQTCGGFDAANVYLYKGESTPSPTPSPTADDASPLSLGCYEDDREDRIMDDLALSDNAMTTELCEQTCLGNTYFATQYGRECWCGSAGADYILHGESADCTYACAGDADQTCGGFDAANVY 828 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12488.1540.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig12488.1540.1 >prot_S-dermatodea_contig12488.1540.1 ID=prot_S-dermatodea_contig12488.1540.1|Name=mRNA_S-dermatodea_contig12488.1540.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=190bp MKDSAMTPEVCNAYCEGEGGYLYYAVEFGGECWCGGAYVDYSRLGALEDTback to top mRNA from alignment at S-dermatodea_contig12488:2490..4746- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig12488.1540.1 ID=mRNA_S-dermatodea_contig12488.1540.1|Name=mRNA_S-dermatodea_contig12488.1540.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2257bp|location=Sequence derived from alignment at S-dermatodea_contig12488:2490..4746- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig12488:2490..4746- >mRNA_S-dermatodea_contig12488.1540.1 ID=mRNA_S-dermatodea_contig12488.1540.1|Name=mRNA_S-dermatodea_contig12488.1540.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1140bp|location=Sequence derived from alignment at S-dermatodea_contig12488:2490..4746- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |