mRNA_S-dermatodea_contig12474.1534.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12474.1534.1
Unique NamemRNA_S-dermatodea_contig12474.1534.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig12474.1534.1 vs. uniprot
Match: A0A6H5KU31_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU31_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 4.290e-42
Identity = 70/96 (72.92%), Postives = 83/96 (86.46%), Query Frame = 2 
Query:  134 VTDQRGWEWRLMVIPNGNSPESIGHLSVFVEHVNKDYIRLQEPGFSREVRLGFALLPVDSSRIRSSETMTKAPLKHGFTYKNADFGYPRCWLRNEV 421
            VTD++GWEWRLM++PNGNS ES G+LSVFVEHVNKD+++ QEPGFSREVRLGFALLP D SR+ SS+++ K PL+H F YKNADFGYPRCW R  V
Sbjct:  279 VTDRKGWEWRLMIMPNGNSSESYGNLSVFVEHVNKDHLKDQEPGFSREVRLGFALLPQDQSRVCSSDSLCKPPLRHAFDYKNADFGYPRCWARAVV 374
[Close]
BLAST of mRNA_S-dermatodea_contig12474.1534.1 vs. uniprot
Match: D8LL31_ECTSI (USP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL31_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 2.420e-26
Identity = 54/88 (61.36%), Postives = 69/88 (78.41%), Query Frame = 2 
Query:   11 GPPLPQDLDFVADNRIVFVGDFNVHINPR--QLLRNERIHSHSVTDQRGWEWRLMVIPNGNSPESIGHLSVFVEHVNKDYIRLQEPGF 268
            GPP  + LD V DNR+VFVGDF V ++ R   L+ N+R HSH+VTD++GWEWRLM++PNGNS ES G+LSVFVEHVNKD+++ Q   F
Sbjct:  233 GPPAAETLDHVGDNRVVFVGDFAV-LDGRGGALMCNDRQHSHTVTDRKGWEWRLMIMPNGNSSESYGNLSVFVEHVNKDHLKDQNADF 319
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12474.1534.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KU31_9PHAE4.290e-4272.92USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LL31_ECTSI2.420e-2661.36USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12474contigS-dermatodea_contig12474:1310..6328 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size425
Cds size423
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12474.1534.1prot_S-dermatodea_contig12474.1534.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12474 1310..6326 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924249.115027-CDS-S-dermatodea_contig12474:1309..14421622924249.115027-CDS-S-dermatodea_contig12474:1309..1442Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12474 1310..1442 +
1694079123.986909-CDS-S-dermatodea_contig12474:1309..14421694079123.986909-CDS-S-dermatodea_contig12474:1309..1442Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12474 1310..1442 +
1622924249.1268125-CDS-S-dermatodea_contig12474:3536..36591622924249.1268125-CDS-S-dermatodea_contig12474:3536..3659Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12474 3537..3659 +
1694079124.0004222-CDS-S-dermatodea_contig12474:3536..36591694079124.0004222-CDS-S-dermatodea_contig12474:3536..3659Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12474 3537..3659 +
1622924249.138379-CDS-S-dermatodea_contig12474:6159..63261622924249.138379-CDS-S-dermatodea_contig12474:6159..6326Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12474 6160..6326 +
1694079124.0123062-CDS-S-dermatodea_contig12474:6159..63261694079124.0123062-CDS-S-dermatodea_contig12474:6159..6326Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12474 6160..6326 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12474.1534.1

>prot_S-dermatodea_contig12474.1534.1 ID=prot_S-dermatodea_contig12474.1534.1|Name=mRNA_S-dermatodea_contig12474.1534.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=141bp
YPSRPPSAAGSRFRCRQPHRLRGRLQRAHQSQAVAEERAHPQPFGDRSER
VGVAPDGDTQRQLSREHRPPQRLRGARQQGLHPPSGARFFEGGTPWLRPF
AGGLFPDSLVRDYDKGPFEARIYLQKRRLWLPAVLAQKRGA
back to top

mRNA from alignment at S-dermatodea_contig12474:1310..6328+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12474.1534.1 ID=mRNA_S-dermatodea_contig12474.1534.1|Name=mRNA_S-dermatodea_contig12474.1534.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5019bp|location=Sequence derived from alignment at S-dermatodea_contig12474:1310..6328+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TATCCTTCCAGGCCCCCCTCTGCCGCAGGATCTCGATTTCGTTGCAGACA
ACCGCATCGTCTTCGTGGGAGACTTCAACGTGCACATCAATCCCAGGCAG
TTGCTGAGGAACGAGCGCATCCACAGCCATTCGGTGAGGGAGGCGGGGGA
GGGGGGGGGCTGGGGGGGTTCACAGGTGGTAAGCTTGGACCATTTATTTT
TCTTGAAAAAGTTGGACCCTAAAACCCTCTCTCGCTCTATGAATTTGACG
TCATTTAATGGTTTCAGGGGGATTATACTGCGAGTACGAGGAGCGTAGCT
TTGTTGTTGTGCGTGGCTATTCCACAACAATCTTCTTCGCTTCAGAGGGG
AGGGGGATGTGACACGATAGCATAATAGACGATGGCAATCATCTCACAAC
TAAAAACAACCCATTCCTAGAGTCACCTCTTGACTGTAGCATGACACGAT
AGCGTCGTATATAATGTAGGCTTGCACTGAGTTAGATTGGGCAATCTTTT
TCCTCTCCCAAATGATTGGTTGGACCCCAATGCCAGTGTTCCGTGTTCAT
AAATATTTACTGTCTTGGGGAGGGAGGGAGGGAGGGCATGTCCTACATGA
TATGAAAAGCCATTCTGTAGCATCATGTGCAACGTAGGCCTTCACAGGTG
TAGCTTGGAGGAACAATCTTCCCTTCTAAAAAAGTGGGACCCCAACGCTC
GCTCTTACGTTTTTGACGTCATTTGTAGTTTCAGGGGGCGGGGGTCTAAA
CCCGTCTACACCCGTCTACACCTTAACCCTTTTGGTACTAGCCCCTAATA
CTAATACTGTTTGGAGCGCCTGTTAGCACGTAATGAGGCGTGCTTGAAGC
GGGGACCTGGGCAACTCCAGTGGCTATCACGCAGGAATGAGAGAGAACGG
AGCGCAAGGGAAACGGGGGTGTAGCTGTCGAATGGCATCGTCTGTATGTG
TGATTACTGATTCCCAACCAGATCAGTCAACCCACCAGTCAAGCAGGCAA
TCAATCAACCTACCAATCGATGGCTGGCAACCCTCTCGGGTTGTGCTTAG
TCAGCCAATCAATCGGTGGTAAAGCGGTCGGTTCGTGCTTCGTTTTATCA
CGCAGGCATTGGTGGGTCGGTCGGTTTGTGCTTGGTCAATGAACCCATGA
ATCAGATCCATCGTAAACCAGTCGGTTTGTGCTTCGCTTCGTCAATCAAT
CAATCAATCGATCAATCAACCGACCAAATCAATGCGTAAACCGGTCGGTT
TGCGATCAAGCAATCACATCGATCGTCAACCGGTCGGTCTATGCTTCGTC
AATCAATCAATCAATCAATCAATCACCTATATCTATGTATCTAAGTATTT
ATCTATCTACTTCGAGGTATCTATCTATCTATATACAGTATCTATCAAAT
GAACGAAATGGACGGTAAACCGGTCGGTATGTGCTTCGTCAACCAATTAA
TCAATCAAAACGATCGTAAATCGGTCGGTTTGTGCTTTCATCATTCAATC
AATCAATCAATCAAATCGATGGTAAACCGGTCGGTTTGTGCTTCGTCAAC
CAATTAATCAATTGAAACGATCATGAATCGGTCGATTTGTGCTTCATACA
TCAATCAATCAGTCAAATCAATCAGTCAAATCAATCAGTCAATCGATCAA
ATCAACCGTAAACCTGTCGGTTTGTTCTTCGTCAACCAATCAAACTAATC
CAATAAACGAAATCGATGGTACACCGGTCGGTTTGTGCTTTCATCAATCA
AGCAGTCAATCACATCCCATCAAACTTAAATTTTGTGCTTCGTCAACCAA
ATCATTCACTCGAATCAACCAAATCAGTAGTAAACCGGTCGGTTTCTGCT
TCGTCAGTCAACTAAATCGACCAAGTCAATCGTAAACCGGTCGGTTTCTG
CTTCGTCAACCGATGAATCAATCAACTCAATCGTAAACCAGTTGGTTTGT
GGTTCGTCAACCAATCAAATCAACGAAATCGATGGTAAACCGGTCGGTTT
GCGTTTCGTCGACCCATCAACCAATCAAATCAACCAAACCGATTGTAAAC
CGGTCGGTTCGTGCCTCGTCAACCAATCAACCAATCACATCGATGGTAAA
CCGGCTCTTTTGTTGCTTCGTCAATGAACCAATCAATCAATCAAATCAAA
TCAACCAATCAAATCAACGAATCAAATCAACCAAATCAATCGTAAAACCG
GTCGGTTTGTGGTTCAATTAAATGCAGGTGACCGATCAGAGAGGGTGGGA
GTGGCGCCTGATGGTGATACCCAACGGCAACTCTCCCGAGAGCATAGGCC
ACCTCAGCGTCTTCGTGGAGCACGTCAACAAGGACTACATCCGCCTTCAG
GTGAGAGAGAGAGAGATGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGACGTATTTTTCTATTTGTTATTGATTTGG
TTTCCACACGTATAGCCAGCCGATCGGCTTGATCCGAATCGACTCGTGGT
CAGATGCTATAGCAAAGAGTCAAGGAGAAAAATAACTATTCAGAACTCTG
CTTCTACTAAACACCGTACCGTCCCTGGTACTTACTATTAAGATGGTACA
AGTAATGAAGAAATAGTACCCCAGATATGGGAAACACCGTACCGTCCCTG
GTACTTACTATTAAGATTGAAATAATGAATGAAGAAATAGTACCCCAGAT
ATGGGAAAAGAGAGAGAGAGAGACCTTCGCCCTCTTTATATTACAGTATA
ACTATTATAGTGGGTAGCCACTTTGGGCCACGCCTGTGAGGTGTGCGCCG
TGGGGTGGCTGTGGGCAAACGGGCGAACAGGCGAAACGTTCGAAAAAGGG
TCAAAATACTACCAGGTACTCTGTAAGCCCTATCGATTTGGCATCAAAAG
CTCCACTCTAAAATTCCTATCGATTTGGCATCAAGAGATCCACTCTTAAA
TCCCTATAGTAAGTATCGAGTTTTGGGCATCAAGGACCCACTCTAAATTT
GAACTAAAACAACGCGCAGAGCGTTGTTATTTTGTACTAGTTGCAAGCCA
CGTTAAGGCTGTCGCCCGTGAGGTGTGCGCTGGCAGGACGATGTGCGGGT
GAGGTTTGGGATACGGTGTGGCGACCCCAGCAGGCGTATCGCTATGTATT
TGAAATAAATGTGTATCGTATCGGATTAAGTATACCCAATCCGGCTTCAG
CTTGAACATGTAAATCGTACGGAATTGAGTATGGCCTCAGTGTATTGTAG
TATAAAAAATGGTTGACTCTTGTATTAAATAATAAGGATACTACTGTAGT
AGGTGTTAATAGCGACGGCTACACGCCCGTGAGGTGAGCGACCGTACAAC
AAATCACAAAATCGATCCATGGAAGTTCAGTTTACGTAATCGGCCTCATG
TCGTCCTCAAAATGTCGTGTTTCCAGAATCGTTCTCTATTAATAAATCGC
TATTAAAAATGGTTCCTTGTTGTATGAATTAATAAGATATGAAAACTCAC
AAGACAACCCATGAAAACCGAACTGTTCCGACCATGAAATCTCATGGGAA
CAAAAACGGAAACAAGATTTGGCCATGCATACATAAAAAATAACATGGAC
CTTAAAATCTCGATCATTCCAGCTTTTTTTTCTTGTTACGAAAATTTGGA
CCCGTTAACTATGGTCTATTAATGTAACTCCGTATAGGATTTAGTATACC
CAATCGGGCCTCAGTTGGAAAATGTCAAATCGTATCGGATTTAGTGGATT
TATTAGACAAAATGTAAATCGTATAGGATTTTGTATATCCATCTGGCCTC
AGTTTATTGGTATAAAATATGTTCTTCCCGAGACTGTTTTGGTGTTGTTT
GGGTACATGCTATTCACGTTCGGATCAGTTGCGTAGTCATGGTCATGATA
TTTTGTCCTGATTACTGTGTTATTCTGTAATATCTATATATTCGAAGTAT
CTATCTATCTCCTTCGCATCTATTTATATATCTATATGTCTAGAGCTATC
TATCTATCTATCTATCTATCTATCTATCTACAGTATCTGTCTATCTATCT
ATCTATTATATATCCATCTATTAATATCTATCTTTCTACCCGCACCATGC
TTGACTTTGAAACGTTACCGAACGTTGGCTCTGATTCTCGTTGCCTCGCC
AGATGGTAATATGTAACATAATTTAATGTAATATAATGCAATGTAATGTA
ATGTAATATAATGTAATGTACCATAATGTAATATAATGTAATGTAATAGC
CGCGGCGGAAACATGATGATAAAAAACAAAACCTACCCACGACCTCGGCT
GCATCTACGGGGTGGTGGTTGCACTCACCTAACCCTTTCGGGATTGAGCT
CGTTTTTTATATCGTTTTCAGGGGTAAAGCCATATATGTTATCTATGTTA
TCCATGTTATCTATGTTATCTATGTTATCTACTGTATGTGATCTATGTTA
TCTATCTGCCAGCCAAGTGTAAGTGTAGGTATTAGTATTTTACATCCAAC
CGTGACCGAACGAACGGTGGCTACTATACACTATACACTATACTGGTATA
CTGTATACTATACACCATATACTCTATACCGTATTCTGTACTCCTTTCTT
GCCTCGACATACACACAGTTTGATATACTGTATAGAGATATAGCCGCGGT
GGTAAGGTGACGATGAAGAAAACAAGAACCTTGCCACGCTTCACTTGCAT
ATAAGTGTAGCTTTAGGTTTGATGTGCTCTGTGACCCAAGAAGGCCTCCC
CCCTAAAAAATGTAATGATTTCAAAAGCATGGAGCGAGAGTTGGGGTCCC
ACCGCCCCCCCCCGCCCCCCCCCCGCGTGCCCCGCCCTCGACGTCCGTAG
GAGCCCGGTTTTTCGAGGGAGGTACGCCTTGGCTTCGCCCTTTTGCCGGT
GGACTCTTCCCGGATTCGCTCGTCCGAGACTATGACAAAGGCCCCTTTGA
AGCACGGATTTACCTACAAAAACGCCGACTTTGGCTACCCGCGGTGCTGG
CTCAGAAACGAGGTGCTGT
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig12474:1310..6328+

>mRNA_S-dermatodea_contig12474.1534.1 ID=mRNA_S-dermatodea_contig12474.1534.1|Name=mRNA_S-dermatodea_contig12474.1534.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=846bp|location=Sequence derived from alignment at S-dermatodea_contig12474:1310..6328+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TATCCTTCCAGGCCCCCCTCTGCCGCAGGATCTCGATTTCGTTGCAGACA
ACCGCATCGTCTTCGTGGGAGACTTCAACGTGCACATCAATCCCAGGCAG
TTGCTGAGGAACGAGCGCATCCACAGCCATTCGTATCCTTCCAGGCCCCC
CTCTGCCGCAGGATCTCGATTTCGTTGCAGACAACCGCATCGTCTTCGTG
GGAGACTTCAACGTGCACATCAATCCCAGGCAGTTGCTGAGGAACGAGCG
CATCCACAGCCATTCGGTGACCGATCAGAGAGGGTGGGAGTGGCGCCTGA
TGGTGATACCCAACGGCAACTCTCCCGAGAGCATAGGCCACCTCAGCGTC
TTCGTGGAGCACGTCAACAAGGACTACATCCGCCTTCAGGTGACCGATCA
GAGAGGGTGGGAGTGGCGCCTGATGGTGATACCCAACGGCAACTCTCCCG
AGAGCATAGGCCACCTCAGCGTCTTCGTGGAGCACGTCAACAAGGACTAC
ATCCGCCTTCAGGAGCCCGGTTTTTCGAGGGAGGTACGCCTTGGCTTCGC
CCTTTTGCCGGTGGACTCTTCCCGGATTCGCTCGTCCGAGACTATGACAA
AGGCCCCTTTGAAGCACGGATTTACCTACAAAAACGCCGACTTTGGCTAC
CCGCGGTGCTGGCTCAGAAACGAGGTGCTGAGCCCGGTTTTTCGAGGGAG
GTACGCCTTGGCTTCGCCCTTTTGCCGGTGGACTCTTCCCGGATTCGCTC
GTCCGAGACTATGACAAAGGCCCCTTTGAAGCACGGATTTACCTACAAAA
ACGCCGACTTTGGCTACCCGCGGTGCTGGCTCAGAAACGAGGTGCT
back to top