mRNA_S-dermatodea_contig12472.1533.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12472.1533.1
Unique NamemRNA_S-dermatodea_contig12472.1533.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig12472.1533.1 vs. uniprot
Match: D8LBI4_ECTSI (Purple acid phosphatase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBI4_ECTSI)

HSP 1 Score: 234 bits (597), Expect = 1.570e-71
Identity = 105/130 (80.77%), Postives = 119/130 (91.54%), Query Frame = 1
Query:   16 RQDLESTDRTLTPWVVVMMHCPWYNSNLAHQGERQAETAMRAIEPIFYEHKVAVVIAGHVHAYERSHPVVDFGITEDGPVYLVVGGAGNREGHAGSEFYPTPEWSAFRDGKVYGSGRLSVQGSSLALWEW 405
            ++DLES DR LTPW+VVMMHCPWYNSNLAHQGERQAETAMRA+EP+ ++HK AVVI GHVHAYERSHPVVDF + EDGP++LVVGGAGNREGHA ++FYP PEWSAFRDG VYGSGRLS++ SSLALWEW
Sbjct:  411 QKDLESADRALTPWLVVMMHCPWYNSNLAHQGERQAETAMRAMEPLLHQHKAAVVITGHVHAYERSHPVVDFELAEDGPIHLVVGGAGNREGHA-ADFYPKPEWSAFRDGTVYGSGRLSIRSSSLALWEW 539          
BLAST of mRNA_S-dermatodea_contig12472.1533.1 vs. uniprot
Match: A0A6H5KE14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE14_9PHAE)

HSP 1 Score: 171 bits (432), Expect = 4.610e-50
Identity = 75/129 (58.14%), Postives = 99/129 (76.74%), Query Frame = 1
Query:   19 QDLESTDRTLTPWVVVMMHCPWYNSNLAHQGERQAETAMRAIEPIFYEHKVAVVIAGHVHAYERSHPVVDFGITEDGPVYLVVGGAGNREGHAGSEFYPTPEWSAFRDGKVYGSGRLSVQGSSLALWEW 405
            +DL+  DR+ TPW+V M HCPW+NSNLAH GER A TAMRA+EP+ +++K ++V+AGHVHAYERS PV+   + +DG V LVVGG+GN EG    ++Y  P+WSAFR+G  +G G LSV  S++ALWEW
Sbjct:  164 EDLDGCDRSRTPWLVAMFHCPWHNSNLAHPGERMAATAMRAMEPVLFQNKASLVVAGHVHAYERSVPVLSGQLNDDGLVNLVVGGSGNNEGRD-PDYYRLPDWSAFRNGSAFGFGTLSVMNSTMALWEW 291          
BLAST of mRNA_S-dermatodea_contig12472.1533.1 vs. uniprot
Match: D7FWJ2_ECTSI (Purple acid phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWJ2_ECTSI)

HSP 1 Score: 167 bits (423), Expect = 1.460e-46
Identity = 74/129 (57.36%), Postives = 96/129 (74.42%), Query Frame = 1
Query:   19 QDLESTDRTLTPWVVVMMHCPWYNSNLAHQGERQAETAMRAIEPIFYEHKVAVVIAGHVHAYERSHPVVDFGITEDGPVYLVVGGAGNREGHAGSEFYPTPEWSAFRDGKVYGSGRLSVQGSSLALWEW 405
            +DL+  DR+ TPW+V M HCPW+NSNLAH GER A TAM A+EP+ ++HK ++ IAGHVHAYERS PV+   + + G V LVVGG+GN EG    ++Y  P+WSAFR+G  +G G LSV  S++ALWEW
Sbjct:  411 EDLDGCDRSRTPWLVAMFHCPWHNSNLAHPGERMAATAMHAMEPVLFQHKASLAIAGHVHAYERSLPVLSGQLNDAGLVNLVVGGSGNNEGRD-PDYYRLPDWSAFRNGSAFGFGTLSVMNSTMALWEW 538          
BLAST of mRNA_S-dermatodea_contig12472.1533.1 vs. uniprot
Match: A0A7S2CG88_9STRA (Purple acid phosphatase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CG88_9STRA)

HSP 1 Score: 151 bits (382), Expect = 1.190e-41
Identity = 68/130 (52.31%), Postives = 90/130 (69.23%), Query Frame = 1
Query:   22 DLESTDRTLTPWVVVMMHCPWYNSNLAHQGERQAETAMRAIEPIFYEHKVAVVIAGHVHAYERSHPVVDFGITE--DGPVYLVVGGAGNREGHAGSEFYPTPEWSAFRDGKVYGSGRLSVQGSSLALWEW 405
            DL + +R  TPWV V+ HCPWYNS+  HQ E QA +   A+EP+F  ++V  V  GHVHAYER+HP+V  G+ +   G VY+VVG  GNREGHA     P P+WSA+R+G  +G GRL++  +S+ALWEW
Sbjct:  264 DLSAVNRVKTPWVFVLFHCPWYNSDDDHQDEFQAVSMQAALEPVFLNYRVNAVFTGHVHAYERTHPLVLDGVVDVSRGIVYVVVGDGGNREGHADDYNTPPPDWSAYRNGSAFGHGRLTLYNASVALWEW 393          
BLAST of mRNA_S-dermatodea_contig12472.1533.1 vs. uniprot
Match: A0A482RNP1_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RNP1_9ARCH)

HSP 1 Score: 149 bits (377), Expect = 3.840e-41
Identity = 65/129 (50.39%), Postives = 86/129 (66.67%), Query Frame = 1
Query:   19 QDLESTDRTLTPWVVVMMHCPWYNSNLAHQGERQAETAMRAIEPIFYEHKVAVVIAGHVHAYERSHPVVDFGITEDGPVYLVVGGAGNREGHAGSEFYPTPEWSAFRDGKVYGSGRLSVQGSSLALWEW 405
            QDL+  +R +TPWV+V+MHCPWYNSN AH GE QA     ++E +FY+++V +V  GHVHAYER++PV       DG VY+ +G  GNREGHA + +Y  P WSA+R+G  YG G LS+       W W
Sbjct:  231 QDLQGVNREVTPWVIVVMHCPWYNSNQAHYGELQAVLMRESMEEVFYKNRVNIVFTGHVHAYERTYPVFRNETRSDGVVYVTIGDGGNREGHANT-YYEQPSWSAYRNGTQYGHGELSLWSRDKLTWRW 358          
BLAST of mRNA_S-dermatodea_contig12472.1533.1 vs. uniprot
Match: A0A835YVM8_9STRA (Purple acid phosphatase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVM8_9STRA)

HSP 1 Score: 145 bits (365), Expect = 7.630e-39
Identity = 65/128 (50.78%), Postives = 88/128 (68.75%), Query Frame = 1
Query:   22 DLESTDRTLTPWVVVMMHCPWYNSNLAHQGERQAETAMRAIEPIFYEHKVAVVIAGHVHAYERSHPVVDFGITEDGPVYLVVGGAGNREGHAGSEFYPTPEWSAFRDGKVYGSGRLSVQGSSLALWEW 405
            DL + DR++TPW++V+ HCPWYNSN AHQ E QA     ++E +  + + A+VI+GHVHAYER+HPV  +   +  PVY+V+G  GNREGHA   + P P WSA RD   +G GRL+V  ++ A WEW
Sbjct:  302 DLAALDRSVTPWLIVITHCPWYNSNFAHQLESQAVAMKESMEGMIADARAALVISGHVHAYERTHPVRGWARRDGAPVYIVIGDGGNREGHARGLYAP-PHWSAARDDGAFGHGRLAVANATHARWEW 428          
BLAST of mRNA_S-dermatodea_contig12472.1533.1 vs. uniprot
Match: A0A225X3X7_9STRA (Purple acid phosphatase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X3X7_9STRA)

HSP 1 Score: 145 bits (365), Expect = 8.790e-39
Identity = 69/130 (53.08%), Postives = 89/130 (68.46%), Query Frame = 1
Query:   16 RQDLESTDRTLTPWVVVMMHCPWYNSNLAHQGERQAETAMRAIEPIFYEHKVAVVIAGHVHAYERSHPVVDFGITEDGPVYLVVGGAGNREGHAGSEFYPTPEWSAFRDGKVYGSGRLSVQGSSLALWEW 405
            +Q+ +  DR++TPWVVV+MH PWYNSN AHQG        + +E I Y +KV V++AGHVHAYERSHPV +  + +DGPVY+V+G AGNREG A + F P PEWSAFR    YG   L+V   + A  +W
Sbjct:  305 QQEFQRVDRSITPWVVVIMHGPWYNSNTAHQGMEPHMGMKKNMEDILYRNKVDVIVAGHVHAYERSHPVYEEKVVQDGPVYVVLGDAGNREGLAPTYFDPQPEWSAFRQAD-YGFSMLNVINRTHANMQW 433          
BLAST of mRNA_S-dermatodea_contig12472.1533.1 vs. uniprot
Match: A0A3F2S309_9STRA (Purple acid phosphatase n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S309_9STRA)

HSP 1 Score: 141 bits (356), Expect = 6.670e-38
Identity = 70/129 (54.26%), Postives = 85/129 (65.89%), Query Frame = 1
Query:   19 QDLESTDRTLTPWVVVMMHCPWYNSNLAHQGERQAETAMRAIEPIFYEHKVAVVIAGHVHAYERSHPVVDFGITEDGPVYLVVGGAGNREGHAGSEFYPTPEWSAFRDGKVYGSGRLSVQGSSLALWEW 405
            Q+L   DR++TPWVVV+MH PWYNSN AHQG        + +E +FY +KV + IAGHVHAYERSHPV    + EDG VY+V+G AGNREG A S F P P+WSAFR    YG   L V   + A  +W
Sbjct:  250 QELLRVDRSVTPWVVVIMHGPWYNSNTAHQGMEPHMIMKKHMEELFYHYKVDLAIAGHVHAYERSHPVYKEKVQEDGTVYVVLGDAGNREGLAPSYFNPQPDWSAFRQAD-YGYSLLKVLNRTHATMQW 377          
BLAST of mRNA_S-dermatodea_contig12472.1533.1 vs. uniprot
Match: A0A2P4X806_9STRA (Purple acid phosphatase n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X806_9STRA)

HSP 1 Score: 142 bits (358), Expect = 8.900e-38
Identity = 69/130 (53.08%), Postives = 87/130 (66.92%), Query Frame = 1
Query:   16 RQDLESTDRTLTPWVVVMMHCPWYNSNLAHQGERQAETAMRAIEPIFYEHKVAVVIAGHVHAYERSHPVVDFGITEDGPVYLVVGGAGNREGHAGSEFYPTPEWSAFRDGKVYGSGRLSVQGSSLALWEW 405
            +Q+ +  DR++TPW+VV+MH PWYNSN AHQG        + +E I Y +KV VV+AGHVHAYERSHPV    + ED P+Y+V+G AGNREG A + F P PEWSAFR    YG   L+V   + A  EW
Sbjct:  305 QQEFQRVDRSITPWLVVIMHGPWYNSNTAHQGLEPHMIMKKNMEDILYRNKVDVVVAGHVHAYERSHPVYKEKVVEDAPIYVVLGDAGNREGLAPTYFDPQPEWSAFRQAD-YGFSVLNVVNRTHANMEW 433          
BLAST of mRNA_S-dermatodea_contig12472.1533.1 vs. uniprot
Match: H3GBF7_PHYRM (Purple acid phosphatase n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GBF7_PHYRM)

HSP 1 Score: 141 bits (356), Expect = 1.740e-37
Identity = 68/130 (52.31%), Postives = 87/130 (66.92%), Query Frame = 1
Query:   16 RQDLESTDRTLTPWVVVMMHCPWYNSNLAHQGERQAETAMRAIEPIFYEHKVAVVIAGHVHAYERSHPVVDFGITEDGPVYLVVGGAGNREGHAGSEFYPTPEWSAFRDGKVYGSGRLSVQGSSLALWEW 405
            +Q+ +  DR++TPW+VV+MH PWYNSN AHQG        + +E I Y +KV VV++GHVHAYERSHPV    + ED PVY+V+G AGNREG A + F P PEWSAFR    YG   L+V   + A  +W
Sbjct:  307 QQEFQRVDRSVTPWLVVIMHGPWYNSNTAHQGMEPHMIMKKNMEDILYRNKVDVVVSGHVHAYERSHPVYKQKVVEDAPVYVVLGDAGNREGLAPTYFDPQPEWSAFRQAD-YGFSLLNVANRTHASMQW 435          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12472.1533.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBI4_ECTSI1.570e-7180.77Purple acid phosphatase n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5KE14_9PHAE4.610e-5058.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWJ2_ECTSI1.460e-4657.36Purple acid phosphatase n=1 Tax=Ectocarpus silicul... [more]
A0A7S2CG88_9STRA1.190e-4152.31Purple acid phosphatase n=1 Tax=Dictyocha speculum... [more]
A0A482RNP1_9ARCH3.840e-4150.39Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A835YVM8_9STRA7.630e-3950.78Purple acid phosphatase n=1 Tax=Tribonema minus Ta... [more]
A0A225X3X7_9STRA8.790e-3953.08Purple acid phosphatase n=1 Tax=Phytophthora megak... [more]
A0A3F2S309_9STRA6.670e-3854.26Purple acid phosphatase n=4 Tax=Phytophthora kerno... [more]
A0A2P4X806_9STRA8.900e-3853.08Purple acid phosphatase n=2 Tax=Phytophthora palmi... [more]
H3GBF7_PHYRM1.740e-3752.31Purple acid phosphatase n=1 Tax=Phytophthora ramor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12472contigS-dermatodea_contig12472:5689..6924 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score234.2
Seed ortholog evalue3.6e-59
Seed eggNOG ortholog2880.D8LBI4
KEGG koko:K22390
EggNOG free text desc.acid phosphatase activity
EggNOG OGsCOG1409@1,KOG1378@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryother localisation
Exons2
Model size405
Cds size405
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924249.0651557-CDS-S-dermatodea_contig12472:5688..57921622924249.0651557-CDS-S-dermatodea_contig12472:5688..5792Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12472 5689..5792 -
1694079123.9632604-CDS-S-dermatodea_contig12472:5688..57921694079123.9632604-CDS-S-dermatodea_contig12472:5688..5792Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12472 5689..5792 -
1622924249.0799916-CDS-S-dermatodea_contig12472:6623..69241622924249.0799916-CDS-S-dermatodea_contig12472:6623..6924Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12472 6624..6924 -
1694079123.9767935-CDS-S-dermatodea_contig12472:6623..69241694079123.9767935-CDS-S-dermatodea_contig12472:6623..6924Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12472 6624..6924 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12472.1533.1prot_S-dermatodea_contig12472.1533.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12472 5689..6924 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12472.1533.1

>prot_S-dermatodea_contig12472.1533.1 ID=prot_S-dermatodea_contig12472.1533.1|Name=mRNA_S-dermatodea_contig12472.1533.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=135bp
MLCCRRQDLESTDRTLTPWVVVMMHCPWYNSNLAHQGERQAETAMRAIEP
IFYEHKVAVVIAGHVHAYERSHPVVDFGITEDGPVYLVVGGAGNREGHAG
SEFYPTPEWSAFRDGKVYGSGRLSVQGSSLALWEW
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mRNA from alignment at S-dermatodea_contig12472:5689..6924-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12472.1533.1 ID=mRNA_S-dermatodea_contig12472.1533.1|Name=mRNA_S-dermatodea_contig12472.1533.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1236bp|location=Sequence derived from alignment at S-dermatodea_contig12472:5689..6924- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCTGTGCTGTCGCCGACAGGACCTCGAGTCGACAGACCGCACCCTCAC TCCGTGGGTCGTGGTGATGATGCACTGCCCGTGGTACAACTCCAACCTCG CCCACCAGGGAGAGCGGCAGGCGGAGACGGCCATGCGGGCGATCGAGCCC ATCTTTTACGAGCACAAGGTCGCCGTCGTCATCGCGGGGCACGTGCACGC CTACGAGCGGTCGCACCCGGTCGTGGACTTCGGAATAACGGAGGATGGGC CTGTGTACCTGGTGGTGGGCGGCGCCGGCAACCGCGAGGGCCACGCAGGT TGTTGTTGTTGTTGTTGTTGTTTTGATCACATCAAATGCTGTTGGTAGAA ATCCAGCCTTCGTCTCGCAACGGTAAATGGAGCCTATGAAACACATTATA TATCTATATATCATATGTATATATATAACAGGGAGCAGTATGACCAAAAT ATAATACACATGGATCGGAACCACCTGCTTGACAAAGGAGATATCGAAAT ATATTTCAAAAGCAATGGTGGCCGCATGACTAGTGAATAGTGAATTGGGC GCTGGAACAATATATTGCGCTCGCAGGTGCAAGAAACGAAGGTATTTATG CTGAGAAATGCGCTCGCGCCAAACCGTGTGCGTACGTACATGTGTACATG CCATATTAGGGTTCCTTGTAATATGGTGGCCCGCGCGGGATCACGTCTGC TTTCTTTTGCTCTGGGGCGCGGTGCGTTTTTTTGCGAACCAGGCTTGTGT CTGTTGGTCTCGCTTTCTGCGGCTTGCCAGCCAAGCAAAGAAAACACCTG CCTAGGGTAGTGTCTCTCGTGTGTTATCAGTCGCCTTGGCCGCAAAACCT CCATCACAGCATCATAGCGTATATCATAGTGCGGGTGTAACGCCAGACGA TATGATAAGAGTACCGGGCTGGAAGGCCTCCTCTGTGCGTGTTAACGTTT TCTATACTGACTTCAGCACATTTCCGCCGGCTTTTTCGTCTCATTTTGTT TTCTGTATTGGCCCTCACACGACAATAAAGCAGAACAGTTGCTGGAAAAG CGTTTTGTATTTTACTGACGCATCGCAAAAAATGCTGCTGCCGTTATCGC TCGATTCCCCGCCGGCGCTACCGGCACGCCAGCCGAGTTTTACCCCACGC CCGAGTGGAGCGCCTTCCGCGACGGCAAGGTGTACGGTTCGGGGCGCCTT TCCGTCCAGGGCTCGTCGCTGGCCCTTTGGGAGTGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig12472:5689..6924-

>mRNA_S-dermatodea_contig12472.1533.1 ID=mRNA_S-dermatodea_contig12472.1533.1|Name=mRNA_S-dermatodea_contig12472.1533.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=810bp|location=Sequence derived from alignment at S-dermatodea_contig12472:5689..6924- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCTGTGCTGTCGCCGACAGGACCTCGAGTCGACAGACCGCACCCTCAC
TCCGTGGGTCGTGGTGATGATGCACTGCCCGTGGTACAACTCCAACCTCG
CCCACCAGGGAGAGCGGCAGGCGGAGACGGCCATGCGGGCGATCGAGCCC
ATCTTTTACGAGCACAAGGTCGCCGTCGTCATCGCGGGGCACGTGCACGC
CTACGAGCGGTCGCACCCGGTCGTGGACTTCGGAATAACGGAGGATGGGC
CTGTGTACCTGGTGGTGGGCGGCGCCGGCAACCGCGAGGGCCACGCAGGT
TATGCTGTGCTGTCGCCGACAGGACCTCGAGTCGACAGACCGCACCCTCA
CTCCGTGGGTCGTGGTGATGATGCACTGCCCGTGGTACAACTCCAACCTC
GCCCACCAGGGAGAGCGGCAGGCGGAGACGGCCATGCGGGCGATCGAGCC
CATCTTTTACGAGCACAAGGTCGCCGTCGTCATCGCGGGGCACGTGCACG
CCTACGAGCGGTCGCACCCGGTCGTGGACTTCGGAATAACGGAGGATGGG
CCTGTGTACCTGGTGGTGGGCGGCGCCGGCAACCGCGAGGGCCACGCAGG
TTCCGAGTTTTACCCCACGCCCGAGTGGAGCGCCTTCCGCGACGGCAAGG
TGTACGGTTCGGGGCGCCTTTCCGTCCAGGGCTCGTCGCTGGCCCTTTGG
GAGTGGCCGAGTTTTACCCCACGCCCGAGTGGAGCGCCTTCCGCGACGGC
AAGGTGTACGGTTCGGGGCGCCTTTCCGTCCAGGGCTCGTCGCTGGCCCT
TTGGGAGTGG
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