mRNA_S-dermatodea_contig1247.1532.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1247.1532.1
Unique NamemRNA_S-dermatodea_contig1247.1532.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1247.1532.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1247contigS-dermatodea_contig1247:15638..21884 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size286
Cds size213
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1247.1532.1prot_S-dermatodea_contig1247.1532.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1247 15709..21884 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924248.779215-UTR-S-dermatodea_contig1247:15637..157081622924248.779215-UTR-S-dermatodea_contig1247:15637..15708Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1247 15638..15708 +
1694079123.7743607-UTR-S-dermatodea_contig1247:15637..157081694079123.7743607-UTR-S-dermatodea_contig1247:15637..15708Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1247 15638..15708 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924248.7872577-CDS-S-dermatodea_contig1247:15708..157461622924248.7872577-CDS-S-dermatodea_contig1247:15708..15746Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1247 15709..15746 +
1694079123.7827268-CDS-S-dermatodea_contig1247:15708..157461694079123.7827268-CDS-S-dermatodea_contig1247:15708..15746Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1247 15709..15746 +
1622924248.7948954-CDS-S-dermatodea_contig1247:21709..218841622924248.7948954-CDS-S-dermatodea_contig1247:21709..21884Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1247 21710..21884 +
1694079123.7934442-CDS-S-dermatodea_contig1247:21709..218841694079123.7934442-CDS-S-dermatodea_contig1247:21709..21884Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1247 21710..21884 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1247.1532.1

>prot_S-dermatodea_contig1247.1532.1 ID=prot_S-dermatodea_contig1247.1532.1|Name=mRNA_S-dermatodea_contig1247.1532.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=71bp
MVRGGASCNMWCRARRNSTPSLVLLVLVAIYDQVSAFSGYPQHRAPCGLS
LCFFGASAGVSPRSRMASAGS
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mRNA from alignment at S-dermatodea_contig1247:15638..21884+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1247.1532.1 ID=mRNA_S-dermatodea_contig1247.1532.1|Name=mRNA_S-dermatodea_contig1247.1532.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=6247bp|location=Sequence derived from alignment at S-dermatodea_contig1247:15638..21884+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CACCTCACCGCTGCGTGCGCTTATCTGGTTGTTCTTCGTAGTTGGGGAAT
ACTGCTCGAGGATCATCGGGAATGGTGCGGGGGGGGGCTAGCTGCAACAT
GTGGTGCAGGTGAAAGGCCGCGCGGTGTGATCTCCTTGTGCGAATCGTTT
TTATTGGTGTTGGCACGTGAGCTTGTCTCGGTAAACAGGAACTCACGACG
CGCGCACCGGGGGGGTTCCTTACCGTAATATAAAGAGTAGGGCACTTGAA
AGGGCGTGTGCTGGCTCGCTACGTCTCCTCTTTGGGTGTTCGTTTGGCAG
GTTTGCTGCTTCTGGTCGCCTCTCTGCGTTATACAGCAAGTACAACTTTC
GTGTTCGCTGTTGGCCAGTACCTTAAAAGCAAGATCGAGGATGGGGTTGG
GATCGCAAGTCCAACAGCAGAAGCACCCCGTGCCTGGTGGTAGGCCGAAC
ATGCATGAGCACAAACTCCAGCCGTCACCAGCTCGCCGGCCCACAGCCTA
TAATGTAGCTGCTGTTGTGGAGCCGGAACGCAAACATCCGCAGCGTGCCG
TCGCAAACAGACAACAAAGTTTTAGGACTGAGTCCACTTTTGCAGGGTCT
TTTGCCAGCACCGCATTTCACATGGAACAGGTATGATACAGTACCCGAAC
CGTGGCTACTCCTTGTCGTACTGGCGGGAAAGAGTTCAGTTATGACCCTT
CCACCCTTAGCTCGCATGCGCGTGGTGGTGCACTCACATAATTATCACCG
TGATATCCCCGTAGTGACGATATTCGGCGCAATAACGTATGGTATACAAG
AAACCCTTCGGACGTAGTCCTTTTTCATATTTGGGGCAGGCTACCTGAAG
CTATCGCGGGGTGACGCAAGTGGAATGGAATTCGATCTATAGATTGAGTA
GCCGAGGATGTTCACGGACAATTCAAAGCGAAGCCGGGTTTTGCTGCGGA
TACACAATCACATATGGTATGATACGGTATGACCGCAACCGACCGCGTCC
TCTATTTATTATGATGCACTCGAGGACACCGGGATATCGCGGGGACCATT
ATTCGACGCAGCGTGTCTAGATGTGTTCTTGTAGTACGTGCCCACGCGGT
AGTGCTTTATGGAGTCTTGTGGCATCGATGCTGAATCCCAAAAGGTTTGC
TTCAACTCTCTCGAATCTACTGCTGTATCACTACTACTCTCTCTACAGCA
GCAGCAGTAGTTAGTTGTGTTTTTAGTGTGTGCAGTAGTATATCGTATCA
ACGATAATAGCGGTATACCATTTATAAAAAAACAAAATCTAGTTCCTACG
TGCATCCCTAACTCACAAGCACACTGATTCAGGGGAAGCTGAAAGTAGGT
ACGTTCTTTACGCTCTCGGTAAGGCATATGTGCCGGGGGGGACTATCGAG
CATTCCTTTTGTCGGCGGCGCATTACAGCAGTAACTGTAGTTGATTTTTG
TTTACGTGTTATACATGAAGCCTCCCTGAGCTGAACGTAGATACTGACAC
GGAACACACCAGTAAGCTGCGCTACGTAGTAGGAGGGATACAATTTAGAG
CATATAGTATCTATATCAGTCCTAGCAGAAGCTGTGTCCGCATCGATCCA
CATGGGGAAGTACTCATCTAACTATAATAGCTATAACCAAACTTATTTAT
TACCTTATTGTAATTGTGATTTGACAAAAACGTGCAGCGCTGCTTGCGAG
ATCTCAGAGAGCTATCATAGAATTGAATGCAGTTTCAATGATGATATTAT
ATAAAAGCTCTTCCTGAAAGTTGACACTGTCTGGATAGCTCCGCTGCGTA
CAACCTATTTACAGGAGATATATGTGTACTCAGTGCCTTTGTTTCGTCTC
GCCAGCCGCGGTGGAAGTCGAGCTACGCAGTTTACAGTAGTAGCAGTATC
ATAGCAGACAGTGAAACCCCTCGTGTGGGATGGAAAACTCAAATAAAATG
AAATCTCAAAGATCCAGCGAAAAAAAAAATGCGCGCGGTCCGCGCGCGGA
GATTCATTCACGCGAGAATAATTAAATATTCACGCGAATTACGTAGCCTT
AACCACAGCACCCATCACACCTCTACTCGACGATACAGGGATATCGCGGA
GACCATTCTTCGACGGCAGCGTGTCTAGATGTGTACTTGTAGTGCGTGCC
CACGCGGTAGTGCTTCATGGAGTCTTGTGGCATCGATGTTGAATCCCGAA
AGGTTTCCTTCAACTCTCTCGAAGCTACTGCTGTAGAGCTAGCACTACTC
CCTGCATGTTTTATTTTTAGTGTGTGTGTGCAGTAGTATCTCGTATCATG
AACAACAACAGCTGTATAGCATTGGGCACTCCTTCTGTCGGCGGCGCATA
AGAGGCCCACCGGACAGCAGCGCTAGCAGTACCGGTACCCGCGTCGATCC
GCAGGACGCTGCTCTCCTCAGCGGTTCGCACCTACCTCCCGAAACCTGTA
GTCACAACACTTTCTATCGAAGGCAAAAAAACAAAACAAAAATGCACCAC
GTGCGTGCGCTGAACACACCACGTACGACCCACAAGTAAATAGAGCAAGC
AGCAAGCAACGCACAGCCAGGACCAAGAGGAAGATTCCTAAGCTCAGAAA
AATCTCAAAAAGAAGTTTGTAGGTATATTTATAACTGTATACCAGTACTA
CCAGGCCGGGTATATACTATATACCAGGTACTATGTACCTGGTACTAGAC
TCAGTCCCAAAAGGGTCAATAGTTGTAGCCTTTTATAAACTGTGGCAGTG
AGCAGCGAGCCAGTGAGCCAGCAAGCCAGCAAACCCCGTAAGGCGACAAG
TCAGATGGCAACACGGATTCGTGACGCGCTAATGCAGCCTCCCCTGGGCT
CTATTCCAGCGCGGTGCTACAGCCTCCGCGCACAAGCTTTTGATTGGCAA
AAGTCGACACCTCTGGACCCCCCCCGGTGTAAAAACATGTTAGACTCTCT
TGGCCGCACTCGGGCCATCTCTATTGATAGCTATATGCTGAATTCGACGA
CGTCGTCTTGGTGACACGCATGCACACGTACAACTCTCGGTCATGCATTC
AGATCAAGCTATGCAGTTTAAAGCCACGACTACGCCCGTGGGGTGTGATT
CCTTTTGGCGCGGTGGCTGTACGACGACTCACGGCAGGTATTCACCCACA
CGCTAACTCTCCTCCCTACTCCCCTTCGACTGAGACCTACAACCCCCGTG
CCTTTGAGGTTCGAGGTGGGGTTGGTCGAGGTAGGGTTGCTCTTGTGGCA
CGAAGCCGTAAAAGTGCTATTATAGGGAATGGGGTGGTTCATGCAGTATG
TCCTGTGAGCTCGGAGACCTCGGTCGAAGAGTCTTGTCTCTCCCAAAAGA
GGTGAAACGTATCACATCCTATAAGGACACCAGCAGAACATTGGATTGTT
GGAAAGACCTAGAGCAACCATAGACGTACGAGTGGTACTCCTCCAGGAGT
ACGCTCTTGAGCAGAATATAGTCCTAGTGTATCACACATGTACTTAGTGG
ATGTTGTGTGCGTGTGGCGCTTTTGCGTTCGCACTGTGATCAAGGACCCT
TTGCGGCACTTGGAGTATAGTCACGCCCACTGAACGTGCAACATTTGGTT
GCCCGGTATGTTCAATCAACCCATGACATATCGGTTGGCGTCGCAAACGC
AACGATGATGGGCAGCACCCGGTACCACCCTTGTGAAACGCAGTCTGACC
GGCGAAAACCCGGCATATCGATAAATCCCGGCATTATTGAGGTGCGTGGT
CTAAGTCCGTTTGGATATGACATGCGTTAAAGACATGTATCCCCCCCCCC
CCCTCCAGCCCTGCAAAAAGAAGCTAGGGCCTCACTGTAGATACTTGAGT
TCTAGCAGCGTGATACTATAGAGCTCTAGTGCTGCTGTGGTTTTTGCGGT
TTCCCATCGCCTTATTGTGGAGCTACTTGTACAATAGTTTGTTTTTGTCG
CAACCCAACCCGCGAGCGATTGCGCTGGCGGGCCAAACCCTCTCTAGTTG
CCCTTGATCAGCTGTTCACGGCGAGTAGGTGCGGTGTGCGTGCCGCTCAT
GGCAGATCCGCGGGTTCTGGGTTGCTCTTATCTTGGCCGAAAAAATACCA
GACAATTTAACATCAGGCTGAGTGGAGCGCCTTTTGCCTGGCGGAAGGCT
ACGATCACGTCTTATTTTGCTTGTGCTCTATACGATCGCATTACAACATT
TTTTTAACTATACGAAGTCCTTTGTTTCCTCCCAGGGAATTGTAATTGTT
AGGGATTCACGTACCAGCATCTCGGATTATGTTCTTCTACAGCACAGAAC
ACATACAAGTGACATACTCTCAGCAGTCGGCCGACGGATACACCCCACGG
GCGTAGCCGTGACTGCCCGCTAGTAGTAATAAATGAAGTGTTGCGTGCTG
CAGCAAACCTTTCAAGGAAGCTTTCACCTGGGAGCGATGCTGCGTGAATA
CTAGTACTTGGAGCACCCACCTCAAAGAAGCATTCTAACCTCACGACGAC
ACCTGAAAGAAAGAAATAGAAAGCACTCCTTGCTGGTTACCTTCGATGAA
TTCCGGCAAATCCTGTGCTGCATCCTCACGACCCTTCGAGTTCCTCGCGA
ATCTAAGACCAGCACCCGCCTCAGGAAGGCGGCAAGAAATTTCGCCGCTG
TGGTTGTGCCCGTGGCTAACGTGGTTCCAGGGCCCGCCTATTACGGAGGT
ACACTATAATCAAGTAATCAGGACCAAATCTCACGACCATGAATACCCCA
AGTATTCCGACCATGAATACCCAAACAACAAAAAAACATATCACGAAGAA
AAACAGCACGAGGTCTGGCCTTATACAACAACACGACCATGAAATCTCGA
TAATTCCAGCCTGAAATGTCTTTTCTAAGTTGAGACTCGTGGCAAATTTG
GACCTGTTAACCATTGTCCTCCGTAATAGTGCGAGTTGGGATTCTGGTTT
GGCGCAGATTTGCAAAAATTGCTTGCGGGCCACCGCGGACCACCAAAACA
CCAACCAAAACTGCCACCTTAAACCAACGAAACGCTCCTTCTAACAAGTG
TATGGTAAACGCCAGCTCCATACGGACATGCCACTTTAGGGCTTTAGGGG
GATTGTTTCTCGGACAGTTTGAGACGCTGATTATCGTTCAAGGCAGGCAG
CTGTACAGGCGTGAGTACAATAAGATACAACGGCTGGGTATTGGAGTCAG
GCACCTCTCCACCAAGTTTATTGACGTGGTTTGAACAGTCGCGGAAGAAG
GGCCGAGTGCCGCGCCAATGATGTTCACACATATACCTATATATACTATT
ACAAGCTTTGTTTTTGCCCTGTATGGGGTGCGGCGCGATTTATGCGTCGT
TGATATTCCGTGACCCAGTACAGTGTGAAAAATGGTATATCACACCTCGC
CTCGCTCGGTTCTACCCCCCAAGCAAACGTCCCTTCTCCAAATAGGCAGA
GTAGCGCAAAGCAGGACCTCCTCCGGCTCAAAGGACGGGTACCTCCGTGT
ACGAACTGGTTTAGCGTAGTGAATCCAGGCGTCCATTCAACTGCCGATCG
ACGCGGGTGCTCGCCCAGCGCGAAGCGAAGTAAAGAGGAACTGTTGGGTG
TGCGTATGATTACAATACGTTGGGTGTGACACCTGTCTGCATCCTTTGGT
CCTCACCTCTTTCTCTCTAAAGCCCAGTCAAATCCATGAAAGTGTGCGTG
TGTGTACGCTGTTATTGACGTTTTTTTCCCTTTGGTTTCCACAATATACC
TTACTATTTCATGCTCCAACTGCTTCCCAGCGAGCAGATGTCGCTGGCTG
GCTAGCCTCGTTCGGATACCCTTGATCAACTCTAAGAGGTCTAACGGCTG
GATGCAGTGTACACGTGGGTACTTATTTCTTGTATATCTTCGCTTACCCA
CTGGGCGTTTCTGACGGCAATATCGTTTCGGGCTGTGTAGTTTCCCGCGT
TGTTATTTCAACTCTAAAGCCAAGCAAACACGCGCAAGGCCTTTGATGCT
CTAACCTGCACGTCAACGCTACCGAAGCAACAGTCGGCGCCCCACGCCCT
CCGCCCTCCGCGCCACTATCAGGGCTCGGCGCAACTCGACCCCTTCCCTA
GTTCTGCTGGTGCTGGTAGCCATATACGACCAAGTATCCGCGTTTTCGGG
GTATCCGCAACATAGAGCGCCGTGCGGGCTGAGCCTGTGTTTTTTTGGCG
CATCTGCTGGCGTATCTCCGAGGTCAAGGATGGCGTCGGCGGGTTCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig1247:15638..21884+

>mRNA_S-dermatodea_contig1247.1532.1 ID=mRNA_S-dermatodea_contig1247.1532.1|Name=mRNA_S-dermatodea_contig1247.1532.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=426bp|location=Sequence derived from alignment at S-dermatodea_contig1247:15638..21884+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTGCGGGGGGGGGCTAGCTGCAACATGTGGTGCAGATGGTGCGGGGG
GGGGCTAGCTGCAACATGTGGTGCAGGGCTCGGCGCAACTCGACCCCTTC
CCTAGTTCTGCTGGTGCTGGTAGCCATATACGACCAAGTATCCGCGTTTT
CGGGGTATCCGCAACATAGAGCGCCGTGCGGGCTGAGCCTGTGTTTTTTT
GGCGCATCTGCTGGCGTATCTCCGAGGTCAAGGATGGCGTCGGCGGGTTC
CGGCTCGGCGCAACTCGACCCCTTCCCTAGTTCTGCTGGTGCTGGTAGCC
ATATACGACCAAGTATCCGCGTTTTCGGGGTATCCGCAACATAGAGCGCC
GTGCGGGCTGAGCCTGTGTTTTTTTGGCGCATCTGCTGGCGTATCTCCGA
GGTCAAGGATGGCGTCGGCGGGTTCC
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