mRNA_S-dermatodea_contig1247.1531.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1247.1531.1
Unique NamemRNA_S-dermatodea_contig1247.1531.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig1247.1531.1 vs. uniprot
Match: D8LRZ8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRZ8_ECTSI)

HSP 1 Score: 50.8 bits (120), Expect = 1.360e-5
Identity = 26/43 (60.47%), Postives = 30/43 (69.77%), Query Frame = 1 
Query:    1 ILSEKTPPNQRAEWLRVPLEYAAAEGIPGLVTTLLAAGADGSA 129
            ++S    P Q  EWLRVPLE+AAA G   LV +LL AGADGSA
Sbjct:   20 LVSHSATPQQWKEWLRVPLEHAAARGNLNLVNSLLEAGADGSA 62
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BLAST of mRNA_S-dermatodea_contig1247.1531.1 vs. uniprot
Match: A0A6H5KKF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKF4_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 1.640e-5
Identity = 26/40 (65.00%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:   10 EKTPPNQRAEWLRVPLEYAAAEGIPGLVTTLLAAGADGSA 129
            ++  P Q AEWLRVPLE+AAA+G   LV  LL AGADGSA
Sbjct:    6 DRATPEQWAEWLRVPLEHAAAQGSLVLVDKLLGAGADGSA 45
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BLAST of mRNA_S-dermatodea_contig1247.1531.1 vs. uniprot
Match: D8LS36_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS36_ECTSI)

HSP 1 Score: 49.7 bits (117), Expect = 3.480e-5
Identity = 25/43 (58.14%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:    1 ILSEKTPPNQRAEWLRVPLEYAAAEGIPGLVTTLLAAGADGSA 129
            ++S    P Q  EWLR+PLE+AAA G   LV++LL AGADGSA
Sbjct:   20 LVSYSATPQQWKEWLRMPLEHAAARGNLNLVSSLLGAGADGSA 62
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BLAST of mRNA_S-dermatodea_contig1247.1531.1 vs. uniprot
Match: A0A6H5K513_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K513_9PHAE)

HSP 1 Score: 49.7 bits (117), Expect = 3.490e-5
Identity = 26/43 (60.47%), Postives = 30/43 (69.77%), Query Frame = 1 
Query:    1 ILSEKTPPNQRAEWLRVPLEYAAAEGIPGLVTTLLAAGADGSA 129
            ++S+   P Q AEWLRVPLE+AAA G   LV  LL AGADG A
Sbjct:   20 LVSKGATPEQWAEWLRVPLEHAAASGNLDLVNKLLKAGADGEA 62
[Close]
BLAST of mRNA_S-dermatodea_contig1247.1531.1 vs. uniprot
Match: D8LRS0_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRS0_ECTSI)

HSP 1 Score: 49.3 bits (116), Expect = 4.750e-5
Identity = 26/43 (60.47%), Postives = 30/43 (69.77%), Query Frame = 1 
Query:    1 ILSEKTPPNQRAEWLRVPLEYAAAEGIPGLVTTLLAAGADGSA 129
            ++S    P Q  EWLRVPLE+AAA G   LV +LL AGADGSA
Sbjct:   20 LVSYGATPQQWKEWLRVPLEHAAARGNLNLVNSLLEAGADGSA 62
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1247.1531.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LRZ8_ECTSI1.360e-560.47Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5KKF4_9PHAE1.640e-565.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LS36_ECTSI3.480e-558.14Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5K513_9PHAE3.490e-560.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRS0_ECTSI4.750e-560.47Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1247contigS-dermatodea_contig1247:14987..15334 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size216
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924249.010153-CDS-S-dermatodea_contig1247:14986..150761622924249.010153-CDS-S-dermatodea_contig1247:14986..15076Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1247 14987..15076 -
1694079123.9424613-CDS-S-dermatodea_contig1247:14986..150761694079123.9424613-CDS-S-dermatodea_contig1247:14986..15076Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1247 14987..15076 -
1622924249.0200891-CDS-S-dermatodea_contig1247:15208..153341622924249.0200891-CDS-S-dermatodea_contig1247:15208..15334Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1247 15209..15334 -
1694079123.9536812-CDS-S-dermatodea_contig1247:15208..153341694079123.9536812-CDS-S-dermatodea_contig1247:15208..15334Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1247 15209..15334 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1247.1531.1prot_S-dermatodea_contig1247.1531.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1247 14987..15334 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1247.1531.1

>prot_S-dermatodea_contig1247.1531.1 ID=prot_S-dermatodea_contig1247.1531.1|Name=mRNA_S-dermatodea_contig1247.1531.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=72bp
ILSEKTPPNQRAEWLRVPLEYAAAEGIPGLVTTLLAAGADGSATPLHIAA
ARGKEGAAKELLVPGAVENVTD
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mRNA from alignment at S-dermatodea_contig1247:14987..15334-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1247.1531.1 ID=mRNA_S-dermatodea_contig1247.1531.1|Name=mRNA_S-dermatodea_contig1247.1531.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=348bp|location=Sequence derived from alignment at S-dermatodea_contig1247:14987..15334- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATCTTATCGGAGAAAACGCCACCGAACCAACGGGCAGAGTGGCTTCGAGT
GCCCCTGGAGTACGCTGCGGCCGAGGGCATTCCCGGCCTCGTCACGACTC
TCCTGGCAGCTGGGGCCGACGGGAGCGTGGGGTGGCGACGTTGCGAAGAT
CGCAGCTTGATCGCGGCAGCTGCCCACGGGGGCAACGGAGACGTGGTGCA
GTCTCTGCTGAGGGCGGGAGGAGTGGGTGATGTGAACGCCACGTTCGGGC
CCATGAAGGCGACACCGCTCCATATCGCTGCTGCTCGGGGCAAGGAGGGC
GCGGCGAAGGAGCTGTTGGTGCCCGGCGCAGTCGAAAATGTGACCGAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig1247:14987..15334-

>mRNA_S-dermatodea_contig1247.1531.1 ID=mRNA_S-dermatodea_contig1247.1531.1|Name=mRNA_S-dermatodea_contig1247.1531.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at S-dermatodea_contig1247:14987..15334- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATCTTATCGGAGAAAACGCCACCGAACCAACGGGCAGAGTGGCTTCGAGT
GCCCCTGGAGTACGCTGCGGCCGAGGGCATTCCCGGCCTCGTCACGACTC
TCCTGGCAGCTGGGGCCGACGGGAGCATCTTATCGGAGAAAACGCCACCG
AACCAACGGGCAGAGTGGCTTCGAGTGCCCCTGGAGTACGCTGCGGCCGA
GGGCATTCCCGGCCTCGTCACGACTCTCCTGGCAGCTGGGGCCGACGGGA
GCGCGACACCGCTCCATATCGCTGCTGCTCGGGGCAAGGAGGGCGCGGCG
AAGGAGCTGTTGGTGCCCGGCGCAGTCGAAAATGTGACCGACGCGACACC
GCTCCATATCGCTGCTGCTCGGGGCAAGGAGGGCGCGGCGAAGGAGCTGT
TGGTGCCCGGCGCAGTCGAAAATGTGACCGAC
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