mRNA_S-dermatodea_contig12449.1523.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12449.1523.1
Unique NamemRNA_S-dermatodea_contig12449.1523.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12449.1523.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12449contigS-dermatodea_contig12449:2583..3804 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size349
Cds size348
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924248.3556354-CDS-S-dermatodea_contig12449:2583..27711622924248.3556354-CDS-S-dermatodea_contig12449:2583..2771Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12449 2584..2771 -
1694079123.4878628-CDS-S-dermatodea_contig12449:2583..27711694079123.4878628-CDS-S-dermatodea_contig12449:2583..2771Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12449 2584..2771 -
1622924248.3711512-CDS-S-dermatodea_contig12449:3644..38041622924248.3711512-CDS-S-dermatodea_contig12449:3644..3804Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12449 3645..3804 -
1694079123.4967313-CDS-S-dermatodea_contig12449:3644..38041694079123.4967313-CDS-S-dermatodea_contig12449:3644..3804Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12449 3645..3804 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12449.1523.1prot_S-dermatodea_contig12449.1523.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12449 2584..3804 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12449.1523.1

>prot_S-dermatodea_contig12449.1523.1 ID=prot_S-dermatodea_contig12449.1523.1|Name=mRNA_S-dermatodea_contig12449.1523.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=116bp
ADVNAGIAVFGIGVKTPIELVGMREHGGRDQPRGAGDFSRQDGDNEKEEE
VHNDNKGGRKTGADTCDAIRRVLRREDRWRRRGGVITLKALLNKNIGNAP
TATAITAAQSSALSMK
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mRNA from alignment at S-dermatodea_contig12449:2583..3804-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12449.1523.1 ID=mRNA_S-dermatodea_contig12449.1523.1|Name=mRNA_S-dermatodea_contig12449.1523.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1222bp|location=Sequence derived from alignment at S-dermatodea_contig12449:2583..3804- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGGATGTGAATGCGGGAATCGCGGTCTTCGGCATTGGCGTGAAGACGCC
GATAGAACTTGTTGGCATGAGAGAACACGGCGGGCGTGATCAGCCTCGAG
GTGCTGGAGACTTTTCGCGCCAAGACGGCGACAACGAAAAAGAAGAGGAG
GTGCACAATGGTGAGCAAAAAGACCAGCCGCCGCCGGTGGACGAACTTGC
CATCGCCTCTGAGGTCTGAGAAATGCAAAGATTGCAGGGGGGGGACCCGT
AAGAAAAACACCCTGTTTTTGTTGGTCGCGCAGGAGTTAAAAGGCGTTTT
TCCATTTTGCTGTGCTCGCGCCTGATTGGTCGTCCCATTTCAGATCCCGT
TTCGATTGCAACATTGTTACTATTGCTGGCCGACGGACAACCCCCCCCCC
CCCCCCACCTTTGGATTTATCGTCTGCGATGCGGGTATATGGTGTTTGCT
TCTCCACGGCATGCGCACTGGTAGCATCTGCCCATCCATGATCGCGTCTC
GGACGAGTCATATCCACTTCGCTCGTCGTTGACATCCCAGTCCGAGCGTC
CGTGTGTACCGTGATAGTCTTGTAGGCAGCGCGGAACGATCGTTGTCGGC
AATCCCGCGCCAAGGGCGTAGATACTGTAGGGTCTCCGTACGAACAAAGC
TTGCGTTTGTAAGACCCTGCTGTACCTCGACCGCAGACCGACCTGAGAGG
TGTTCGACGATAGGGGGGGGGGGGGTGGTCTCGTTAGGCTTAGGAAACCC
TCTAGAGTGGGGAAACGAGCGAACCATCCCCTCCCTGACGAAACCAATGA
TATTTTTTCATAATTTTGTTGGGCACTATAGCGGACGAGATACAAGCATC
CACGTTGCCCCCCCTCCTACCGTTGCACGACTTTGATCACTCTATCTGCC
GCTCGCTGCCGAATACCTTTGACAAGGAAATGGTATCTCTCTCTCTCTCT
CTCTCTCTCCCTCTCTATCTATCTCTCTCGCTTGTTCGCGCTTTGGCCGT
GTTGTCCTTACGCCGGAATCTCACATTTCGCAGATAACAAAGGAGGGAGA
AAGACCGGTGCTGATACGTGCGACGCCATACGCCGCGTCTTGCGCCGAGA
GGATCGCTGGCGCAGGCGCGGCGGCGTGATCACCCTTAAGGCTCTCCTCA
ACAAAAATATCGGGAATGCGCCCACTGCCACCGCTATTACGGCGGCCCAG
TCGTCGGCCTTATCAATGAAAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig12449:2583..3804-

>mRNA_S-dermatodea_contig12449.1523.1 ID=mRNA_S-dermatodea_contig12449.1523.1|Name=mRNA_S-dermatodea_contig12449.1523.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at S-dermatodea_contig12449:2583..3804- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGGATGTGAATGCGGGAATCGCGGTCTTCGGCATTGGCGTGAAGACGCC
GATAGAACTTGTTGGCATGAGAGAACACGGCGGGCGTGATCAGCCTCGAG
GTGCTGGAGACTTTTCGCGCCAAGACGGCGACAACGAAAAAGAAGAGGAG
GTGCACAATGGCGGATGTGAATGCGGGAATCGCGGTCTTCGGCATTGGCG
TGAAGACGCCGATAGAACTTGTTGGCATGAGAGAACACGGCGGGCGTGAT
CAGCCTCGAGGTGCTGGAGACTTTTCGCGCCAAGACGGCGACAACGAAAA
AGAAGAGGAGGTGCACAATGATAACAAAGGAGGGAGAAAGACCGGTGCTG
ATACGTGCGACGCCATACGCCGCGTCTTGCGCCGAGAGGATCGCTGGCGC
AGGCGCGGCGGCGTGATCACCCTTAAGGCTCTCCTCAACAAAAATATCGG
GAATGCGCCCACTGCCACCGCTATTACGGCGGCCCAGTCGTCGGCCTTAT
CAATGAAAATAACAAAGGAGGGAGAAAGACCGGTGCTGATACGTGCGACG
CCATACGCCGCGTCTTGCGCCGAGAGGATCGCTGGCGCAGGCGCGGCGGC
GTGATCACCCTTAAGGCTCTCCTCAACAAAAATATCGGGAATGCGCCCAC
TGCCACCGCTATTACGGCGGCCCAGTCGTCGGCCTTATCAATGAAA
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