mRNA_S-dermatodea_contig12444.1522.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12444.1522.1
Unique NamemRNA_S-dermatodea_contig12444.1522.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12444.1522.1 vs. uniprot
Match: A0A6H5L3E8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3E8_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 1.760e-41
Identity = 66/74 (89.19%), Postives = 70/74 (94.59%), Query Frame = 1 
Query:    7 QDGTAVLRGFRRLLWFWGEYYLRGGRDRLSLEFSTHVKFWAWKRVIRLLCSDDGSPTALVAEPLRLPRSPYDTV 228
            ++GTAVL GFRRLLWFW EYYLRGGRDRLSLEFSTHVKFWAWKRV+RLLC+DDGSPTALV  PLRLPRSPYDTV
Sbjct:  313 KEGTAVLEGFRRLLWFWSEYYLRGGRDRLSLEFSTHVKFWAWKRVVRLLCADDGSPTALVRAPLRLPRSPYDTV 386
[Close]
BLAST of mRNA_S-dermatodea_contig12444.1522.1 vs. uniprot
Match: D7FQ92_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ92_ECTSI)

HSP 1 Score: 147 bits (371), Expect = 3.060e-39
Identity = 65/74 (87.84%), Postives = 69/74 (93.24%), Query Frame = 1 
Query:    7 QDGTAVLRGFRRLLWFWGEYYLRGGRDRLSLEFSTHVKFWAWKRVIRLLCSDDGSPTALVAEPLRLPRSPYDTV 228
            ++G AVL GFRRLLWFW EYYLRGGRDRLSLEFSTHVKFWAWKRV+RLLC+DDGSPTALV  PLRLPRSPYDTV
Sbjct: 1234 KEGAAVLEGFRRLLWFWSEYYLRGGRDRLSLEFSTHVKFWAWKRVVRLLCADDGSPTALVGAPLRLPRSPYDTV 1307
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BLAST of mRNA_S-dermatodea_contig12444.1522.1 vs. uniprot
Match: A0A7S2VHD4_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VHD4_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 7.550e-25
Identity = 44/70 (62.86%), Postives = 53/70 (75.71%), Query Frame = 1 
Query:   10 DGTAVLRGFRRLLWFWGEYYLRGGRDRLSLEFSTHVKFWAWKRVIRLLCSDDGSPTALVAEPLRLPRSPY 219
            D + VLR FR +LWFW EYY   GRDRLSLEFS+H++F  W  V+ LL +DDGS T+LV  P+RLPRSPY
Sbjct:   69 DRSDVLRNFREVLWFWQEYYTHRGRDRLSLEFSSHLRFEEWDHVVSLLAADDGSATSLVPAPVRLPRSPY 138
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BLAST of mRNA_S-dermatodea_contig12444.1522.1 vs. uniprot
Match: A0A835ZCY4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCY4_9STRA)

HSP 1 Score: 105 bits (263), Expect = 1.160e-24
Identity = 48/85 (56.47%), Postives = 59/85 (69.41%), Query Frame = 1 
Query:    4 PQDGTAVLRGFRRLLWFWGEYYLRGGRDRLSLEFSTHVKFWAWKRVIRLLCSDDGSPTALVAEPLRLPRSPYDTVPVSSRHQ*YL 258
            P+ G+ VL  FR+LLWFW EYY   GRDRL +EFS+HV F  W  ++RLLC+DDG+PT+L+A PL LP SPY   P   R   YL
Sbjct: 1092 PRSGSEVLASFRQLLWFWEEYYAHRGRDRLGIEFSSHVDFAEWHALVRLLCADDGAPTSLMAAPLPLPPSPYARPPRPERLPAYL 1176
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BLAST of mRNA_S-dermatodea_contig12444.1522.1 vs. uniprot
Match: A0A7R9WP19_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WP19_9STRA)

HSP 1 Score: 101 bits (252), Expect = 3.440e-24
Identity = 45/74 (60.81%), Postives = 54/74 (72.97%), Query Frame = 1 
Query:   10 DGTAVLRGFRRLLWFWGEYYLRGGRDRLSLEFSTHVKFWAWKRVIRLLCSDDGSPTALVAEPLRLPRSPYDTVP 231
            D   V+R FR +LWFW EYY   GRDRLSLEFS+H++F  W  V+ LL +D+GSPTALV  P+RLPRSPY   P
Sbjct:  216 DRNDVMRNFREVLWFWFEYYTHRGRDRLSLEFSSHLRFQEWIEVVSLLGADNGSPTALVRRPIRLPRSPYQRAP 289
[Close]
BLAST of mRNA_S-dermatodea_contig12444.1522.1 vs. uniprot
Match: A0A7S2A951_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A951_TRICV)

HSP 1 Score: 103 bits (258), Expect = 3.450e-24
Identity = 46/74 (62.16%), Postives = 56/74 (75.68%), Query Frame = 1 
Query:   10 DGTAVLRGFRRLLWFWGEYYLRGGRDRLSLEFSTHVKFWAWKRVIRLLCSDDGSPTALVAEPLRLPRSPYDTVP 231
            D + VLR FR LLWFW EYY   GRDRLSLEFS+H++F  W  V++LLC+DDGS TAL++  +RLPRSPY   P
Sbjct:  398 DRSDVLRNFRELLWFWTEYYTHRGRDRLSLEFSSHLRFQEWNNVVQLLCADDGSSTALLSCAVRLPRSPYTEAP 471
[Close]
BLAST of mRNA_S-dermatodea_contig12444.1522.1 vs. uniprot
Match: A0A7S4T954_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T954_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 3.940e-24
Identity = 40/70 (57.14%), Postives = 55/70 (78.57%), Query Frame = 1 
Query:   22 VLRGFRRLLWFWGEYYLRGGRDRLSLEFSTHVKFWAWKRVIRLLCSDDGSPTALVAEPLRLPRSPYDTVP 231
            + R FR LLWFW EYY   GRDRLSLEFS+H++F  W+ ++++LC+DDG+ T+LV+ P+RLP+SPY   P
Sbjct:  142 ISRNFRELLWFWTEYYTNRGRDRLSLEFSSHLRFEEWENIVKVLCADDGARTSLVSSPIRLPKSPYRKAP 211
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BLAST of mRNA_S-dermatodea_contig12444.1522.1 vs. uniprot
Match: A0A1Z5KHY6_FISSO (Trpc4-associated protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KHY6_FISSO)

HSP 1 Score: 102 bits (253), Expect = 2.610e-23
Identity = 44/70 (62.86%), Postives = 53/70 (75.71%), Query Frame = 1 
Query:   10 DGTAVLRGFRRLLWFWGEYYLRGGRDRLSLEFSTHVKFWAWKRVIRLLCSDDGSPTALVAEPLRLPRSPY 219
            D T VLR FR +LWFW EYY   GRDRLSLEFS+H++F  W  V+ LL +DDGS T+LV  P++LPRSPY
Sbjct: 1374 DRTDVLRNFREVLWFWSEYYSHRGRDRLSLEFSSHIRFQEWNHVVSLLAADDGSATSLVRAPVKLPRSPY 1443
[Close]
BLAST of mRNA_S-dermatodea_contig12444.1522.1 vs. uniprot
Match: A0A7S1ZDF8_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZDF8_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 1.670e-22
Identity = 40/70 (57.14%), Postives = 55/70 (78.57%), Query Frame = 1 
Query:   22 VLRGFRRLLWFWGEYYLRGGRDRLSLEFSTHVKFWAWKRVIRLLCSDDGSPTALVAEPLRLPRSPYDTVP 231
            + R FR LLWFW EYY   GRDRLSLEFS+H++F  W+ ++++LC+DDG+ T+LV+ P+RLP+SPY   P
Sbjct:  939 ISRNFRELLWFWTEYYTNRGRDRLSLEFSSHLRFEEWENIVKVLCADDGARTSLVSSPIRLPKSPYRKAP 1008
[Close]
BLAST of mRNA_S-dermatodea_contig12444.1522.1 vs. uniprot
Match: A0A7S2VEZ1_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VEZ1_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 1.690e-22
Identity = 44/70 (62.86%), Postives = 53/70 (75.71%), Query Frame = 1 
Query:   10 DGTAVLRGFRRLLWFWGEYYLRGGRDRLSLEFSTHVKFWAWKRVIRLLCSDDGSPTALVAEPLRLPRSPY 219
            D + VLR FR +LWFW EYY   GRDRLSLEFS+H++F  W  V+ LL +DDGS T+LV  P+RLPRSPY
Sbjct: 1527 DRSDVLRNFREVLWFWQEYYTHRGRDRLSLEFSSHLRFEEWDHVVSLLAADDGSATSLVPAPVRLPRSPY 1596
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12444.1522.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L3E8_9PHAE1.760e-4189.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQ92_ECTSI3.060e-3987.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2VHD4_9STRA7.550e-2562.86Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A835ZCY4_9STRA1.160e-2456.47Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7R9WP19_9STRA3.440e-2460.81Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S2A951_TRICV3.450e-2462.16Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S4T954_9STRA3.940e-2457.14Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A1Z5KHY6_FISSO2.610e-2362.86Trpc4-associated protein n=2 Tax=Fistulifera solar... [more]
A0A7S1ZDF8_9STRA1.670e-2257.14Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2VEZ1_9STRA1.690e-2262.86Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12444contigS-dermatodea_contig12444:264..528 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score148.3
Seed ortholog evalue1.6e-33
Seed eggNOG ortholog2880.D7FQ92
Preferred nameTRPC4AP
KEGG koko:K11796
GOsGO:0000151,GO:0001942,GO:0003674,GO:0005215,GO:0005216,GO:0005261,GO:0005262,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0007275,GO:0008150,GO:0008152,GO:0008324,GO:0008544,GO:0009056,GO:0009057,GO:0009888,GO:0009987,GO:0015075,GO:0015085,GO:0015267,GO:0015318,GO:0016020,GO:0016567,GO:0019538,GO:0019899,GO:0019902,GO:0019941,GO:0021700,GO:0022404,GO:0022405,GO:0022803,GO:0022838,GO:0022857,GO:0022890,GO:0030001,GO:0030163,GO:0031461,GO:0031464,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0034220,GO:0036211,GO:0042303,GO:0042633,GO:0043170,GO:0043412,GO:0043588,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0046873,GO:0048513,GO:0048731,GO:0048820,GO:0048856,GO:0051179,GO:0051234,GO:0051603,GO:0055085,GO:0060429,GO:0070588,GO:0070647,GO:0070838,GO:0071695,GO:0071704,GO:0071944,GO:0072511,GO:0080008,GO:0098655,GO:0098660,GO:0098662,GO:0098773,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1990234
EggNOG free text desc.hair follicle maturation
EggNOG OGs2CMDE@1,2QQ1C@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko04121
Hectar predicted targeting categoryother localisation
Exons1
Model size267
Cds size252
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924248.3103306-CDS-S-dermatodea_contig12444:263..5151622924248.3103306-CDS-S-dermatodea_contig12444:263..515Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12444 264..515 +
1694079123.4670026-CDS-S-dermatodea_contig12444:263..5151694079123.4670026-CDS-S-dermatodea_contig12444:263..515Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12444 264..515 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924248.3212125-UTR-S-dermatodea_contig12444:515..5281622924248.3212125-UTR-S-dermatodea_contig12444:515..528Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12444 516..528 +
1694079123.4795418-UTR-S-dermatodea_contig12444:515..5281694079123.4795418-UTR-S-dermatodea_contig12444:515..528Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12444 516..528 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12444.1522.1prot_S-dermatodea_contig12444.1522.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12444 264..515 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12444.1522.1

>prot_S-dermatodea_contig12444.1522.1 ID=prot_S-dermatodea_contig12444.1522.1|Name=mRNA_S-dermatodea_contig12444.1522.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=84bp
QPQDGTAVLRGFRRLLWFWGEYYLRGGRDRLSLEFSTHVKFWAWKRVIRL
LCSDDGSPTALVAEPLRLPRSPYDTVPVSSRHQ*
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mRNA from alignment at S-dermatodea_contig12444:264..528+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12444.1522.1 ID=mRNA_S-dermatodea_contig12444.1522.1|Name=mRNA_S-dermatodea_contig12444.1522.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=265bp|location=Sequence derived from alignment at S-dermatodea_contig12444:264..528+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGCCGCAGGACGGGACGGCGGTGCTGCGCGGCTTCCGGCGCCTGCTGTG
GTTCTGGGGCGAGTACTACCTCCGCGGAGGGCGAGATCGCTTGAGCCTGG
AGTTCTCAACCCACGTCAAGTTTTGGGCGTGGAAGAGGGTGATCCGGCTG
CTGTGCTCGGACGATGGCAGCCCGACGGCGCTGGTGGCCGAGCCGTTGCG
GCTGCCGCGCTCCCCGTATGACACCGTCCCGGTTTCCTCGCGCCACCAAT
AGTACTTGCAGGAGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig12444:264..528+

>mRNA_S-dermatodea_contig12444.1522.1 ID=mRNA_S-dermatodea_contig12444.1522.1|Name=mRNA_S-dermatodea_contig12444.1522.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=504bp|location=Sequence derived from alignment at S-dermatodea_contig12444:264..528+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGCCGCAGGACGGGACGGCGGTGCTGCGCGGCTTCCGGCGCCTGCTGTG
GTTCTGGGGCGAGTACTACCTCCGCGGAGGGCGAGATCGCTTGAGCCTGG
AGTTCTCAACCCACGTCAAGTTTTGGGCGTGGAAGAGGGTGATCCGGCTG
CTGTGCTCGGACGATGGCAGCCCGACGGCGCTGGTGGCCGAGCCGTTGCG
GCTGCCGCGCTCCCCGTATGACACCGTCCCGGTTTCCTCGCGCCACCAAT
AGCAGCCGCAGGACGGGACGGCGGTGCTGCGCGGCTTCCGGCGCCTGCTG
TGGTTCTGGGGCGAGTACTACCTCCGCGGAGGGCGAGATCGCTTGAGCCT
GGAGTTCTCAACCCACGTCAAGTTTTGGGCGTGGAAGAGGGTGATCCGGC
TGCTGTGCTCGGACGATGGCAGCCCGACGGCGCTGGTGGCCGAGCCGTTG
CGGCTGCCGCGCTCCCCGTATGACACCGTCCCGGTTTCCTCGCGCCACCA
ATAG
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